CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 256 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a256V256FnonsynGttTtt32383238126158-26160

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a256V256FGttTtt32383238All0.000619
ORF3a256V256FGttTtt689689B.1.1.70.000617
ORF3a256V256FGttTtt339339AY.430.001502
ORF3a256V256FGttTtt255255AY.40.000397
ORF3a256V256FGttTtt227227P.10.003576
ORF3a256V256FGttTtt196196B.1.20.001726
ORF3a256V256FGttTtt175175B.1.617.20.000659
ORF3a256V256FGttTtt130130AY.1030.000807
ORF3a256V256FGttTtt120120B.10.001099
ORF3a256V256FGttTtt112112AY.4.20.002429
ORF3a256V256FGttTtt109109B.1.3510.00324
ORF3a256V256FGttTtt7777AY.30.000766
ORF3a256V256FGttTtt7777AY.50.00159
ORF3a256V256FGttTtt5656AY.330.00374
ORF3a256V256FGttTtt5555AY.1020.001458
ORF3a256V256FGttTtt4747AY.440.000286
ORF3a256V256FGttTtt4040AY.98.10.001937
ORF3a256V256FGttTtt3838AY.290.000599
ORF3a256V256FGttTtt2323AY.470.000715
ORF3a256V256FGttTtt1919B.1.1770.00025
ORF3a256V256FGttTtt1919B.1.2270.904762
ORF3a256V256FGttTtt1717AY.250.000102
ORF3a256V256FGttTtt1717B.1.10.000308
ORF3a256V256FGttTtt1616B.1.5260.000376
ORF3a256V256FGttTtt1515P.20.0028
ORF3a256V256FGttTtt1414AY.460.001457
ORF3a256V256FGttTtt1313AY.200.000505
ORF3a256V256FGttTtt1313AY.420.000523
ORF3a256V256FGttTtt1212AY.610.001257
ORF3a256V256FGttTtt1212Q.10.001516
ORF3a256V256FGttTtt1010AY.7.10.001127
ORF3a256V256FGttTtt1010B.1.6370.000731
ORF3a256V256FGttTtt99AY.1190.000318
ORF3a256V256FGttTtt99AY.390.000222
ORF3a256V256FGttTtt88B.1.5580.03653
ORF3a256V256FGttTtt77AY.46.60.000505
ORF3a256V256FGttTtt77AY.980.000553
ORF3a256V256FGttTtt77B.1.517.10.036842
ORF3a256V256FGttTtt66AY.39.10.000238
ORF3a256V256FGttTtt66B.1.1.2070.007092
ORF3a256V256FGttTtt66B.1.617.10.000774
ORF3a256V256FGttTtt55AY.1060.001674
ORF3a256V256FGttTtt55AY.260.000142
ORF3a256V256FGttTtt55AY.360.000741
ORF3a256V256FGttTtt55AY.4.50.000537
ORF3a256V256FGttTtt55AY.450.000608
ORF3a256V256FGttTtt55AY.870.004163
ORF3a256V256FGttTtt55B.1.1.5190.000199
ORF3a256V256FGttTtt55B.1.177.70.000824
ORF3a256V256FGttTtt55B.1.1890.021459
ORF3a256V256FGttTtt55B.1.4270.000252
ORF3a256V256FGttTtt55B.1.4290.000118
ORF3a256V256FGttTtt55Q.30.000725
ORF3a256V256FGttTtt44AY.1000.000184
ORF3a256V256FGttTtt44AY.1160.001147
ORF3a256V256FGttTtt44AY.1200.000149
ORF3a256V256FGttTtt44AY.1210.000541
ORF3a256V256FGttTtt44B.1.6090.001918
ORF3a256V256FGttTtt33AY.1170.000254
ORF3a256V256FGttTtt33AY.130.000483
ORF3a256V256FGttTtt33AY.340.000291
ORF3a256V256FGttTtt33B.1.1.1740.010135
ORF3a256V256FGttTtt33B.1.177.810.000568
ORF3a256V256FGttTtt33B.1.2210.000213
ORF3a256V256FGttTtt33B.1.2430.000209
ORF3a256V256FGttTtt33B.1.5820.001472
ORF3a256V256FGttTtt33D.20.000225
ORF3a256V256FGttTtt33L.10.005714
ORF3a256V256FGttTtt22A.280.005291
ORF3a256V256FGttTtt22AD.20.000438
ORF3a256V256FGttTtt22AY.1180.000125
ORF3a256V256FGttTtt22AY.230.000139
ORF3a256V256FGttTtt22AY.270.000129
ORF3a256V256FGttTtt22AY.560.00321
ORF3a256V256FGttTtt22AY.640.00119
ORF3a256V256FGttTtt22AY.9.10.000167
ORF3a256V256FGttTtt22B.1.1.250.001137
ORF3a256V256FGttTtt22B.1.1.700.000682
ORF3a256V256FGttTtt22B.1.177.330.003289
ORF3a256V256FGttTtt22B.1.2340.000264
ORF3a256V256FGttTtt22B.1.2390.002442
ORF3a256V256FGttTtt22B.1.360.000292
ORF3a256V256FGttTtt22B.1.466.10.014388
ORF3a256V256FGttTtt22B.1.5170.000854
ORF3a256V256FGttTtt22B.1.5510.002581
ORF3a256V256FGttTtt22B.1.5960.000174
ORF3a256V256FGttTtt22B.1.6120.005305
ORF3a256V256FGttTtt22B.1.6200.001892
ORF3a256V256FGttTtt22N.90.011905
ORF3a256V256FGttTtt22P.1.160.000748
ORF3a256V256FGttTtt22Q.80.00033
ORF3a256V256FGttTtt11AY.100.00053
ORF3a256V256FGttTtt11AY.1070.000466
ORF3a256V256FGttTtt11AY.1090.00074
ORF3a256V256FGttTtt11AY.1110.000183
ORF3a256V256FGttTtt11AY.120.000316
ORF3a256V256FGttTtt11AY.120.20.001285
ORF3a256V256FGttTtt11AY.160.00038
ORF3a256V256FGttTtt11AY.3.10.000085
ORF3a256V256FGttTtt11AY.370.000316
ORF3a256V256FGttTtt11AY.4.30.000842
ORF3a256V256FGttTtt11AY.5.40.000277
ORF3a256V256FGttTtt11AY.550.000917
ORF3a256V256FGttTtt11AY.60.000041
ORF3a256V256FGttTtt11AY.650.000533
ORF3a256V256FGttTtt11AY.710.000475
ORF3a256V256FGttTtt11AY.750.000056
ORF3a256V256FGttTtt11AY.75.10.00018
ORF3a256V256FGttTtt11AY.780.001541
ORF3a256V256FGttTtt11AY.80.000606
ORF3a256V256FGttTtt11AY.850.000427
ORF3a256V256FGttTtt11AY.90.000068
ORF3a256V256FGttTtt11AY.900.000684
ORF3a256V256FGttTtt11AY.910.00073
ORF3a256V256FGttTtt11AY.970.001701
ORF3a256V256FGttTtt11AY.99.20.000092
ORF3a256V256FGttTtt11B.1.1.10.000327
ORF3a256V256FGttTtt11B.1.1.2220.000204
ORF3a256V256FGttTtt11B.1.1.280.000311
ORF3a256V256FGttTtt11B.1.1.330.000421
ORF3a256V256FGttTtt11B.1.1.3720.000689
ORF3a256V256FGttTtt11B.1.1.3860.066667
ORF3a256V256FGttTtt11B.1.1.4480.002033
ORF3a256V256FGttTtt11B.1.1.5210.005348
ORF3a256V256FGttTtt11B.1.1.5260.003546
ORF3a256V256FGttTtt11B.1.1.5280.004808
ORF3a256V256FGttTtt11B.1.1600.000031
ORF3a256V256FGttTtt11B.1.177.350.000691
ORF3a256V256FGttTtt11B.1.177.570.000281
ORF3a256V256FGttTtt11B.1.177.730.000566
ORF3a256V256FGttTtt11B.1.177.860.000183
ORF3a256V256FGttTtt11B.1.258.170.000104
ORF3a256V256FGttTtt11B.1.258.30.001675
ORF3a256V256FGttTtt11B.1.2790.000514
ORF3a256V256FGttTtt11B.1.3110.000275
ORF3a256V256FGttTtt11B.1.351.10.038462
ORF3a256V256FGttTtt11B.1.351.30.000876
ORF3a256V256FGttTtt11B.1.36.210.00216
ORF3a256V256FGttTtt11B.1.36.370.002778
ORF3a256V256FGttTtt11B.1.36.80.001
ORF3a256V256FGttTtt11B.1.36.90.003215
ORF3a256V256FGttTtt11B.1.3960.000706
ORF3a256V256FGttTtt11B.1.4650.003802
ORF3a256V256FGttTtt11B.1.466.20.000391
ORF3a256V256FGttTtt11B.1.5380.008065
ORF3a256V256FGttTtt11B.1.5610.000397
ORF3a256V256FGttTtt11B.1.5700.002941
ORF3a256V256FGttTtt11B.1.6320.006711
ORF3a256V256FGttTtt11B.60.00091
ORF3a256V256FGttTtt11C.10.002392
ORF3a256V256FGttTtt11C.360.000911
ORF3a256V256FGttTtt11C.370.000116
ORF3a256V256FGttTtt11P.1.10.000318
ORF3a256V256FGttTtt11P.1.100.000269
ORF3a256V256FGttTtt11P.1.140.000048
ORF3a256V256FGttTtt11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.