CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 256 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	256	V256del		del	GTT	---	21212	21212	1	26158-26160

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	256	V256del	GTT	---	21212	21212	All	0.004057
ORF3a	256	V256del	GTT	---	10734	10734	B.1.621	0.950164
ORF3a	256	V256del	GTT	---	2601	2601	B.1.628	0.91649
ORF3a	256	V256del	GTT	---	1843	1843	B.1.621.1	0.932221
ORF3a	256	V256del	GTT	---	748	748	B.1.1.7	0.00067
ORF3a	256	V256del	GTT	---	437	437	B.1.627	0.882828
ORF3a	256	V256del	GTT	---	361	361	B.1.617.2	0.001359
ORF3a	256	V256del	GTT	---	341	341	AY.4	0.000531
ORF3a	256	V256del	GTT	---	271	271	B.1.631	0.912458
ORF3a	256	V256del	GTT	---	264	264	B.1	0.002418
ORF3a	256	V256del	GTT	---	249	249	B.1.1	0.004517
ORF3a	256	V256del	GTT	---	216	216	AY.44	0.001315
ORF3a	256	V256del	GTT	---	195	195	B.1.1.222	0.03978
ORF3a	256	V256del	GTT	---	193	193	AV.1	0.974747
ORF3a	256	V256del	GTT	---	186	186	AY.103	0.001155
ORF3a	256	V256del	GTT	---	171	171	B.1.2	0.001506
ORF3a	256	V256del	GTT	---	161	161	AY.43	0.000713
ORF3a	256	V256del	GTT	---	146	146	B.1.160	0.004553
ORF3a	256	V256del	GTT	---	139	139	B.1.526	0.003267
ORF3a	256	V256del	GTT	---	130	130	AY.25	0.000782
ORF3a	256	V256del	GTT	---	72	72	B.1.1.214	0.003993
ORF3a	256	V256del	GTT	---	72	72	B.1.517	0.030743
ORF3a	256	V256del	GTT	---	65	65	B.1.243.2	0.942029
ORF3a	256	V256del	GTT	---	57	57	B.1.619.1	0.036562
ORF3a	256	V256del	GTT	---	56	56	B.1.429	0.001318
ORF3a	256	V256del	GTT	---	51	51	B.1.1.519	0.002025
ORF3a	256	V256del	GTT	---	50	50	B.1.177	0.000658
ORF3a	256	V256del	GTT	---	48	48	AY.3	0.000477
ORF3a	256	V256del	GTT	---	45	45	AY.14	0.003961
ORF3a	256	V256del	GTT	---	44	44	AY.47	0.001369
ORF3a	256	V256del	GTT	---	41	41	AY.26	0.001161
ORF3a	256	V256del	GTT	---	40	40	AY.9.2	0.001469
ORF3a	256	V256del	GTT	---	40	40	C.37	0.004643
ORF3a	256	V256del	GTT	---	31	31	B.1.234	0.00409
ORF3a	256	V256del	GTT	---	30	30	B.1.243	0.002088
ORF3a	256	V256del	GTT	---	28	28	AY.5	0.000578
ORF3a	256	V256del	GTT	---	27	27	AY.36	0.004002
ORF3a	256	V256del	GTT	---	25	25	AY.10	0.013249
ORF3a	256	V256del	GTT	---	23	23	AY.117	0.001944
ORF3a	256	V256del	GTT	---	23	23	AY.75	0.001289
ORF3a	256	V256del	GTT	---	21	21	AY.102	0.000557
ORF3a	256	V256del	GTT	---	21	21	P.1	0.000331
ORF3a	256	V256del	GTT	---	20	20	AY.100	0.00092
ORF3a	256	V256del	GTT	---	19	19	B.1.351	0.000565
ORF3a	256	V256del	GTT	---	18	18	AY.39	0.000445
ORF3a	256	V256del	GTT	---	18	18	AY.9.1	0.001507
ORF3a	256	V256del	GTT	---	17	17	AY.119	0.0006
ORF3a	256	V256del	GTT	---	17	17	AY.20	0.000661
ORF3a	256	V256del	GTT	---	17	17	AY.29	0.000268
ORF3a	256	V256del	GTT	---	16	16	B.1.623	0.008584
ORF3a	256	V256del	GTT	---	15	15	A	0.005805
ORF3a	256	V256del	GTT	---	14	14	B.1.220	0.152174
ORF3a	256	V256del	GTT	---	13	13	AY.113	0.001851
ORF3a	256	V256del	GTT	---	12	12	AY.24	0.005172
ORF3a	256	V256del	GTT	---	12	12	AY.91	0.008766
ORF3a	256	V256del	GTT	---	12	12	B	0.001534
ORF3a	256	V256del	GTT	---	12	12	B.1.177.86	0.002201
ORF3a	256	V256del	GTT	---	12	12	P.1.12	0.005808
ORF3a	256	V256del	GTT	---	11	11	AY.23	0.000767
ORF3a	256	V256del	GTT	---	11	11	B.1.1.306	0.004822
ORF3a	256	V256del	GTT	---	11	11	B.1.427	0.000555
ORF3a	256	V256del	GTT	---	11	11	B.1.639	0.23913
ORF3a	256	V256del	GTT	---	11	11	P.2	0.002053
ORF3a	256	V256del	GTT	---	10	10	B.1.1.171	0.036765
ORF3a	256	V256del	GTT	---	10	10	B.1.110.3	0.007184
ORF3a	256	V256del	GTT	---	9	9	AY.120	0.000335
ORF3a	256	V256del	GTT	---	9	9	AY.39.1	0.000357
ORF3a	256	V256del	GTT	---	9	9	B.1.1.141	0.018109
ORF3a	256	V256del	GTT	---	9	9	B.1.258	0.000599
ORF3a	256	V256del	GTT	---	9	9	B.1.369	0.002567
ORF3a	256	V256del	GTT	---	9	9	B.1.596	0.000784
ORF3a	256	V256del	GTT	---	9	9	C.13	0.230769
ORF3a	256	V256del	GTT	---	8	8	AY.98.1	0.000387
ORF3a	256	V256del	GTT	---	8	8	B.1.1.282	0.093023
ORF3a	256	V256del	GTT	---	8	8	B.1.1.432	0.010127
ORF3a	256	V256del	GTT	---	8	8	B.1.177.9	0.010652
ORF3a	256	V256del	GTT	---	7	7	A.27	0.011589
ORF3a	256	V256del	GTT	---	7	7	AY.4.2	0.000152
ORF3a	256	V256del	GTT	---	7	7	AY.88	0.006189
ORF3a	256	V256del	GTT	---	7	7	AY.9	0.000473
ORF3a	256	V256del	GTT	---	7	7	B.1.221	0.000497
ORF3a	256	V256del	GTT	---	7	7	B.1.258.17	0.000728
ORF3a	256	V256del	GTT	---	7	7	B.1.466.2	0.002739
ORF3a	256	V256del	GTT	---	7	7	B.1.525	0.000792
ORF3a	256	V256del	GTT	---	7	7	Q.8	0.001154
ORF3a	256	V256del	GTT	---	6	6	AY.114	0.001387
ORF3a	256	V256del	GTT	---	6	6	AY.6	0.000247
ORF3a	256	V256del	GTT	---	6	6	B.1.1.198	0.008811
ORF3a	256	V256del	GTT	---	6	6	B.1.1.25	0.003411
ORF3a	256	V256del	GTT	---	6	6	B.1.1.413	0.041379
ORF3a	256	V256del	GTT	---	6	6	B.1.128	0.003812
ORF3a	256	V256del	GTT	---	6	6	B.1.160.29	0.025316
ORF3a	256	V256del	GTT	---	6	6	B.1.177.83	0.008889
ORF3a	256	V256del	GTT	---	6	6	B.1.36	0.000875
ORF3a	256	V256del	GTT	---	5	5	AY.12	0.00158
ORF3a	256	V256del	GTT	---	5	5	AY.121	0.000677
ORF3a	256	V256del	GTT	---	5	5	AY.13	0.000805
ORF3a	256	V256del	GTT	---	5	5	AY.16	0.001898
ORF3a	256	V256del	GTT	---	5	5	AY.68	0.001369
ORF3a	256	V256del	GTT	---	5	5	AY.7	0.00098
ORF3a	256	V256del	GTT	---	5	5	B.1.1.189	0.007564
ORF3a	256	V256del	GTT	---	5	5	B.1.1.297	0.011186
ORF3a	256	V256del	GTT	---	5	5	B.1.1.381	0.2
ORF3a	256	V256del	GTT	---	5	5	B.1.247	0.074627
ORF3a	256	V256del	GTT	---	5	5	B.1.389	0.00501
ORF3a	256	V256del	GTT	---	5	5	B.1.637	0.000365
ORF3a	256	V256del	GTT	---	5	5	P.1.14	0.000239
ORF3a	256	V256del	GTT	---	5	5	P.5	0.068493
ORF3a	256	V256del	GTT	---	5	5	R.1	0.00045
ORF3a	256	V256del	GTT	---	4	4		0.222222
ORF3a	256	V256del	GTT	---	4	4	A.2	0.002647
ORF3a	256	V256del	GTT	---	4	4	AY.120.1	0.001284
ORF3a	256	V256del	GTT	---	4	4	AY.38	0.001997
ORF3a	256	V256del	GTT	---	4	4	AY.61	0.000419
ORF3a	256	V256del	GTT	---	4	4	AY.92	0.001149
ORF3a	256	V256del	GTT	---	4	4	AZ.2	0.003284
ORF3a	256	V256del	GTT	---	4	4	B.1.1.1	0.001307
ORF3a	256	V256del	GTT	---	4	4	B.1.1.28	0.001245
ORF3a	256	V256del	GTT	---	4	4	B.1.1.317	0.001647
ORF3a	256	V256del	GTT	---	4	4	B.1.157	0.01194
ORF3a	256	V256del	GTT	---	4	4	B.1.177.4	0.000844
ORF3a	256	V256del	GTT	---	4	4	B.1.258.11	0.001585
ORF3a	256	V256del	GTT	---	4	4	D.2	0.0003
ORF3a	256	V256del	GTT	---	4	4	P.1.10	0.001078
ORF3a	256	V256del	GTT	---	4	4	P.1.16	0.001496
ORF3a	256	V256del	GTT	---	3	3	AY.35	0.000699
ORF3a	256	V256del	GTT	---	3	3	AY.42	0.000121
ORF3a	256	V256del	GTT	---	3	3	AY.45	0.000365
ORF3a	256	V256del	GTT	---	3	3	AY.98	0.000237
ORF3a	256	V256del	GTT	---	3	3	AY.99.2	0.000276
ORF3a	256	V256del	GTT	---	3	3	B.1.1.165	0.046154
ORF3a	256	V256del	GTT	---	3	3	B.1.1.258	0.009772
ORF3a	256	V256del	GTT	---	3	3	B.1.1.284	0.000322
ORF3a	256	V256del	GTT	---	3	3	B.1.1.318	0.000905
ORF3a	256	V256del	GTT	---	3	3	B.1.1.33	0.001263
ORF3a	256	V256del	GTT	---	3	3	B.1.1.39	0.001529
ORF3a	256	V256del	GTT	---	3	3	B.1.177.73	0.001699
ORF3a	256	V256del	GTT	---	3	3	B.1.177.75	0.003122
ORF3a	256	V256del	GTT	---	3	3	B.1.206	0.002447
ORF3a	256	V256del	GTT	---	3	3	B.1.214.2	0.001799
ORF3a	256	V256del	GTT	---	3	3	B.1.232	0.001612
ORF3a	256	V256del	GTT	---	3	3	B.1.240	0.000647
ORF3a	256	V256del	GTT	---	3	3	B.1.265	0.003812
ORF3a	256	V256del	GTT	---	3	3	B.1.280	0.021429
ORF3a	256	V256del	GTT	---	3	3	B.1.311	0.000824
ORF3a	256	V256del	GTT	---	3	3	B.1.380	0.019868
ORF3a	256	V256del	GTT	---	3	3	B.1.524	0.004219
ORF3a	256	V256del	GTT	---	3	3	B.1.533	0.028846
ORF3a	256	V256del	GTT	---	3	3	B.1.576	0.00272
ORF3a	256	V256del	GTT	---	3	3	C.26	0.022059
ORF3a	256	V256del	GTT	---	3	3	C.37.1	0.007853
ORF3a	256	V256del	GTT	---	2	2	AU.1	0.002532
ORF3a	256	V256del	GTT	---	2	2	AY.1	0.000791
ORF3a	256	V256del	GTT	---	2	2	AY.111	0.000366
ORF3a	256	V256del	GTT	---	2	2	AY.118	0.000125
ORF3a	256	V256del	GTT	---	2	2	AY.30	0.000791
ORF3a	256	V256del	GTT	---	2	2	AY.33	0.000134
ORF3a	256	V256del	GTT	---	2	2	AY.46.6	0.000144
ORF3a	256	V256del	GTT	---	2	2	AY.59	0.001059
ORF3a	256	V256del	GTT	---	2	2	AY.65	0.001066
ORF3a	256	V256del	GTT	---	2	2	AY.99	0.002099
ORF3a	256	V256del	GTT	---	2	2	B.1.1.153	0.002191
ORF3a	256	V256del	GTT	---	2	2	B.1.1.174	0.006757
ORF3a	256	V256del	GTT	---	2	2	B.1.1.208	0.02439
ORF3a	256	V256del	GTT	---	2	2	B.1.1.311	0.000716
ORF3a	256	V256del	GTT	---	2	2	B.1.1.397	0.004505
ORF3a	256	V256del	GTT	---	2	2	B.1.1.409	0.005666
ORF3a	256	V256del	GTT	---	2	2	B.1.1.434	0.000697
ORF3a	256	V256del	GTT	---	2	2	B.1.1.46	0.008734
ORF3a	256	V256del	GTT	---	2	2	B.1.1.99	0.047619
ORF3a	256	V256del	GTT	---	2	2	B.1.111	0.00235
ORF3a	256	V256del	GTT	---	2	2	B.1.160.10	0.016129
ORF3a	256	V256del	GTT	---	2	2	B.1.177.5	0.002484
ORF3a	256	V256del	GTT	---	2	2	B.1.177.62	0.002384
ORF3a	256	V256del	GTT	---	2	2	B.1.177.81	0.000379
ORF3a	256	V256del	GTT	---	2	2	B.1.320	0.002491
ORF3a	256	V256del	GTT	---	2	2	B.1.36.17	0.000988
ORF3a	256	V256del	GTT	---	2	2	B.1.36.8	0.002
ORF3a	256	V256del	GTT	---	2	2	B.1.409	0.001563
ORF3a	256	V256del	GTT	---	2	2	B.1.416	0.002538
ORF3a	256	V256del	GTT	---	2	2	B.1.471	0.005464
ORF3a	256	V256del	GTT	---	2	2	B.1.474	0.003802
ORF3a	256	V256del	GTT	---	2	2	B.1.497	0.00063
ORF3a	256	V256del	GTT	---	2	2	B.1.9.5	0.011364
ORF3a	256	V256del	GTT	---	2	2	B.55	0.0059
ORF3a	256	V256del	GTT	---	2	2	C.36.3	0.001134
ORF3a	256	V256del	GTT	---	2	2	P.1.17	0.000324
ORF3a	256	V256del	GTT	---	2	2	Q.3	0.00029
ORF3a	256	V256del	GTT	---	2	2	Q.4	0.00091
ORF3a	256	V256del	GTT	---	1	1	A.19	0.009434
ORF3a	256	V256del	GTT	---	1	1	A.2.5	0.000499
ORF3a	256	V256del	GTT	---	1	1	A.28	0.002646
ORF3a	256	V256del	GTT	---	1	1	A.5	0.001923
ORF3a	256	V256del	GTT	---	1	1	AU.3	0.00211
ORF3a	256	V256del	GTT	---	1	1	AY.101	0.00049
ORF3a	256	V256del	GTT	---	1	1	AY.104	0.001984
ORF3a	256	V256del	GTT	---	1	1	AY.106	0.000335
ORF3a	256	V256del	GTT	---	1	1	AY.116	0.000287
ORF3a	256	V256del	GTT	---	1	1	AY.2	0.000356
ORF3a	256	V256del	GTT	---	1	1	AY.21	0.001898
ORF3a	256	V256del	GTT	---	1	1	AY.3.1	0.000085
ORF3a	256	V256del	GTT	---	1	1	AY.4.3	0.000842
ORF3a	256	V256del	GTT	---	1	1	AY.4.5	0.000107
ORF3a	256	V256del	GTT	---	1	1	AY.46	0.000104
ORF3a	256	V256del	GTT	---	1	1	AY.46.4	0.000165
ORF3a	256	V256del	GTT	---	1	1	AY.5.3	0.000337
ORF3a	256	V256del	GTT	---	1	1	AY.54	0.000095
ORF3a	256	V256del	GTT	---	1	1	AY.55	0.000917
ORF3a	256	V256del	GTT	---	1	1	AY.60	0.000938
ORF3a	256	V256del	GTT	---	1	1	AY.62	0.000436
ORF3a	256	V256del	GTT	---	1	1	AY.67	0.000464
ORF3a	256	V256del	GTT	---	1	1	AY.73	0.000665
ORF3a	256	V256del	GTT	---	1	1	AY.74	0.000116
ORF3a	256	V256del	GTT	---	1	1	AY.75.1	0.00018
ORF3a	256	V256del	GTT	---	1	1	AY.8	0.000606
ORF3a	256	V256del	GTT	---	1	1	AY.85	0.000427
ORF3a	256	V256del	GTT	---	1	1	B.1.1.117	0.009709
ORF3a	256	V256del	GTT	---	1	1	B.1.1.135	0.004695
ORF3a	256	V256del	GTT	---	1	1	B.1.1.161	0.003534
ORF3a	256	V256del	GTT	---	1	1	B.1.1.192	0.002309
ORF3a	256	V256del	GTT	---	1	1	B.1.1.207	0.001182
ORF3a	256	V256del	GTT	---	1	1	B.1.1.216	0.00089
ORF3a	256	V256del	GTT	---	1	1	B.1.1.244	0.015385
ORF3a	256	V256del	GTT	---	1	1	B.1.1.308	0.011765
ORF3a	256	V256del	GTT	---	1	1	B.1.1.322	0.008772
ORF3a	256	V256del	GTT	---	1	1	B.1.1.368	0.003086
ORF3a	256	V256del	GTT	---	1	1	B.1.1.369	0.000446
ORF3a	256	V256del	GTT	---	1	1	B.1.1.372	0.000689
ORF3a	256	V256del	GTT	---	1	1	B.1.1.398	0.003226
ORF3a	256	V256del	GTT	---	1	1	B.1.1.420	0.001006
ORF3a	256	V256del	GTT	---	1	1	B.1.1.448	0.002033
ORF3a	256	V256del	GTT	---	1	1	B.1.1.481	0.071429
ORF3a	256	V256del	GTT	---	1	1	B.1.1.5	0.008333
ORF3a	256	V256del	GTT	---	1	1	B.1.1.50	0.000679
ORF3a	256	V256del	GTT	---	1	1	B.1.1.526	0.003546
ORF3a	256	V256del	GTT	---	1	1	B.1.170	0.00431
ORF3a	256	V256del	GTT	---	1	1	B.1.177.16	0.000664
ORF3a	256	V256del	GTT	---	1	1	B.1.177.17	0.000821
ORF3a	256	V256del	GTT	---	1	1	B.1.177.21	0.000076
ORF3a	256	V256del	GTT	---	1	1	B.1.177.32	0.00135
ORF3a	256	V256del	GTT	---	1	1	B.1.177.60	0.000218
ORF3a	256	V256del	GTT	---	1	1	B.1.177.87	0.000728
ORF3a	256	V256del	GTT	---	1	1	B.1.239	0.001221
ORF3a	256	V256del	GTT	---	1	1	B.1.258.14	0.00098
ORF3a	256	V256del	GTT	---	1	1	B.1.260	0.003344
ORF3a	256	V256del	GTT	---	1	1	B.1.279	0.000514
ORF3a	256	V256del	GTT	---	1	1	B.1.298	0.002114
ORF3a	256	V256del	GTT	---	1	1	B.1.323	0.020833
ORF3a	256	V256del	GTT	---	1	1	B.1.349	0.000715
ORF3a	256	V256del	GTT	---	1	1	B.1.356	0.001727
ORF3a	256	V256del	GTT	---	1	1	B.1.36.1	0.00114
ORF3a	256	V256del	GTT	---	1	1	B.1.36.16	0.001425
ORF3a	256	V256del	GTT	---	1	1	B.1.36.18	0.00042
ORF3a	256	V256del	GTT	---	1	1	B.1.36.29	0.000517
ORF3a	256	V256del	GTT	---	1	1	B.1.36.31	0.001751
ORF3a	256	V256del	GTT	---	1	1	B.1.362	0.001541
ORF3a	256	V256del	GTT	---	1	1	B.1.367	0.000792
ORF3a	256	V256del	GTT	---	1	1	B.1.396	0.000706
ORF3a	256	V256del	GTT	---	1	1	B.1.411	0.003704
ORF3a	256	V256del	GTT	---	1	1	B.1.438	0.006536
ORF3a	256	V256del	GTT	---	1	1	B.1.438.1	0.000107
ORF3a	256	V256del	GTT	---	1	1	B.1.438.4	0.021277
ORF3a	256	V256del	GTT	---	1	1	B.1.473	0.019231
ORF3a	256	V256del	GTT	---	1	1	B.1.516	0.001957
ORF3a	256	V256del	GTT	---	1	1	B.1.544	0.006024
ORF3a	256	V256del	GTT	---	1	1	B.1.551	0.00129
ORF3a	256	V256del	GTT	---	1	1	B.1.561	0.000397
ORF3a	256	V256del	GTT	---	1	1	B.1.575	0.000303
ORF3a	256	V256del	GTT	---	1	1	B.1.582	0.000491
ORF3a	256	V256del	GTT	---	1	1	B.1.601	0.030303
ORF3a	256	V256del	GTT	---	1	1	B.1.619	0.000871
ORF3a	256	V256del	GTT	---	1	1	B.1.638	0.052632
ORF3a	256	V256del	GTT	---	1	1	B.4	0.002208
ORF3a	256	V256del	GTT	---	1	1	B.6	0.00091
ORF3a	256	V256del	GTT	---	1	1	C.1.2	0.004255
ORF3a	256	V256del	GTT	---	1	1	C.30.1	0.006711
ORF3a	256	V256del	GTT	---	1	1	N.6	0.007092
ORF3a	256	V256del	GTT	---	1	1	P.1.15	0.000232
ORF3a	256	V256del	GTT	---	1	1	P.1.3	0.034483
ORF3a	256	V256del	GTT	---	1	1	P.1.7	0.000319
ORF3a	256	V256del	GTT	---	1	1	P.6	0.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.