CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 256 | V256del | del | GTT | --- | 21212 | 21212 | 1 | 26158-26160 | |
ORF3a | 256 | V256F | nonsyn | Gtt | Ttt | 3238 | 3238 | 1 | 26158-26160 | |
ORF3a | 256 | V256D | nonsyn | gTt | gAt | 1509 | 1509 | 1 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | gtT | gt- | 1461 | 1261 | 0.863107 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | Gtt | -tt | 1461 | 120 | 0.0821355 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | GTT | -NN | 1461 | 40 | 0.0273785 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | GtT | -tN | 1461 | 18 | 0.0123203 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | gTt | g-t | 1461 | 15 | 0.0102669 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | gTT | g-N | 1461 | 3 | 0.00205339 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | GtT | Nt- | 1461 | 2 | 0.00136893 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | GtT | Tt- | 1461 | 1 | 0.000684463 | 26158-26160 | |
ORF3a | 256 | V256del1 | del | GTt | -Nt | 1461 | 1 | 0.000684463 | 26158-26160 | |
ORF3a | 256 | V256I | nonsyn | Gtt | Att | 802 | 735 | 0.916459 | 26158-26160 | |
ORF3a | 256 | V256I | nonsyn | GtT | AtC | 802 | 67 | 0.0835411 | 26158-26160 | |
ORF3a | 256 | V256V | syn | gtT | gtC | 493 | 472 | 0.957404 | 26158-26160 | |
ORF3a | 256 | V256del2 | del | gTT | g-- | 493 | 464 | 0.941176 | 26158-26160 | |
ORF3a | 256 | V256del2 | del | GTt | --t | 493 | 27 | 0.0547667 | 26158-26160 | |
ORF3a | 256 | V256V | syn | gtT | gtA | 493 | 14 | 0.0283976 | 26158-26160 | |
ORF3a | 256 | V256V | syn | gtT | gtG | 493 | 7 | 0.0141988 | 26158-26160 | |
ORF3a | 256 | V256del2 | del | GTT | A-- | 493 | 2 | 0.0040568 | 26158-26160 | |
ORF3a | 256 | V256A | nonsyn | gTt | gCt | 213 | 213 | 1 | 26158-26160 | |
ORF3a | 256 | V256S | nonsyn | GTt | AGt | 143 | 76 | 0.531469 | 26158-26160 | |
ORF3a | 256 | V256S | nonsyn | GTT | AGC | 143 | 67 | 0.468531 | 26158-26160 | |
ORF3a | 256 | V256G | nonsyn | gTt | gGt | 13 | 12 | 0.923077 | 26158-26160 | |
ORF3a | 256 | V256G | nonsyn | gTT | gGA | 13 | 1 | 0.0769231 | 26158-26160 | |
ORF3a | 256 | V256L | nonsyn | Gtt | Ctt | 7 | 7 | 1 | 26158-26160 | |
ORF3a | 256 | V256E | nonsyn | gTT | gAG | 2 | 2 | 1 | 26158-26160 | |
ORF3a | 256 | V256Q | nonsyn | GTT | CAA | 1 | 1 | 1 | 26158-26160 | |
ORF3a | 256 | V256M | nonsyn | GtT | AtG | 1 | 1 | 1 | 26158-26160 | |
ORF3a | 256 | V256N | nonsyn | GTt | AAt | 1 | 1 | 1 | 26158-26160 | |
ORF3a | 256 | V256K | nonsyn | GTT | AAG | 1 | 1 | 1 | 26158-26160 | |
ORF3a | 256 | V256P | nonsyn | GTt | CCt | 1 | 1 | 1 | 26158-26160 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 256 | V256del | GTT | --- | 21212 | 21212 | All | 0.004057 |
ORF3a | 256 | V256del | GTT | --- | 10734 | 10734 | B.1.621 | 0.950164 |
ORF3a | 256 | V256F | Gtt | Ttt | 3238 | 3238 | All | 0.000619 |
ORF3a | 256 | V256del | GTT | --- | 2601 | 2601 | B.1.628 | 0.91649 |
ORF3a | 256 | V256del | GTT | --- | 1843 | 1843 | B.1.621.1 | 0.932221 |
ORF3a | 256 | V256D | gTt | gAt | 1509 | 1509 | All | 0.000289 |
ORF3a | 256 | V256del1 | gtT | gt- | 1261 | 1461 | All | 0.000241 |
ORF3a | 256 | V256del1 | Gtt | -tt | 120 | 1461 | All | 0.000023 |
ORF3a | 256 | V256del1 | GTT | -NN | 40 | 1461 | All | 0.000008 |
ORF3a | 256 | V256del1 | GtT | -tN | 18 | 1461 | All | 0.000003 |
ORF3a | 256 | V256del1 | gTt | g-t | 15 | 1461 | All | 0.000003 |
ORF3a | 256 | V256del1 | gTT | g-N | 3 | 1461 | All | 0.000001 |
ORF3a | 256 | V256del1 | GtT | Nt- | 2 | 1461 | All | 0 |
ORF3a | 256 | V256del1 | GTt | -Nt | 1 | 1461 | All | 0 |
ORF3a | 256 | V256del1 | GtT | Tt- | 1 | 1461 | All | 0 |
ORF3a | 256 | V256I | Gtt | Att | 735 | 802 | All | 0.000141 |
ORF3a | 256 | V256I | GtT | AtC | 67 | 802 | All | 0.000013 |
ORF3a | 256 | V256del | GTT | --- | 748 | 748 | B.1.1.7 | 0.00067 |
ORF3a | 256 | V256F | Gtt | Ttt | 689 | 689 | B.1.1.7 | 0.000617 |
ORF3a | 256 | V256del1 | gtT | gt- | 512 | 512 | A.27 | 0.847682 |
ORF3a | 256 | V256V | gtT | gtC | 472 | 493 | All | 0.00009 |
ORF3a | 256 | V256del2 | gTT | g-- | 464 | 493 | All | 0.000089 |
ORF3a | 256 | V256del2 | GTt | --t | 27 | 493 | All | 0.000005 |
ORF3a | 256 | V256V | gtT | gtA | 14 | 493 | All | 0.000003 |
ORF3a | 256 | V256V | gtT | gtG | 7 | 493 | All | 0.000001 |
ORF3a | 256 | V256del2 | GTT | A-- | 2 | 493 | All | 0 |
ORF3a | 256 | V256del | GTT | --- | 437 | 437 | B.1.627 | 0.882828 |
ORF3a | 256 | V256del | GTT | --- | 361 | 361 | B.1.617.2 | 0.001359 |
ORF3a | 256 | V256del | GTT | --- | 341 | 341 | AY.4 | 0.000531 |
ORF3a | 256 | V256F | Gtt | Ttt | 339 | 339 | AY.43 | 0.001502 |
ORF3a | 256 | V256D | gTt | gAt | 316 | 316 | B.1.1.7 | 0.000283 |
ORF3a | 256 | V256del | GTT | --- | 271 | 271 | B.1.631 | 0.912458 |
ORF3a | 256 | V256del | GTT | --- | 264 | 264 | B.1 | 0.002418 |
ORF3a | 256 | V256F | Gtt | Ttt | 255 | 255 | AY.4 | 0.000397 |
ORF3a | 256 | V256del2 | gTT | g-- | 254 | 254 | B.1.1.7 | 0.000227 |
ORF3a | 256 | V256del | GTT | --- | 249 | 249 | B.1.1 | 0.004517 |
ORF3a | 256 | V256F | Gtt | Ttt | 227 | 227 | P.1 | 0.003576 |
ORF3a | 256 | V256del1 | gtT | gt- | 200 | 218 | AY.4 | 0.000311 |
ORF3a | 256 | V256del1 | gTt | g-t | 13 | 218 | AY.4 | 0.00002 |
ORF3a | 256 | V256del1 | Gtt | -tt | 4 | 218 | AY.4 | 0.000006 |
ORF3a | 256 | V256del1 | gTT | g-N | 1 | 218 | AY.4 | 0.000002 |
ORF3a | 256 | V256del | GTT | --- | 216 | 216 | AY.44 | 0.001315 |
ORF3a | 256 | V256A | gTt | gCt | 213 | 213 | All | 0.000041 |
ORF3a | 256 | V256F | Gtt | Ttt | 196 | 196 | B.1.2 | 0.001726 |
ORF3a | 256 | V256del | GTT | --- | 195 | 195 | B.1.1.222 | 0.03978 |
ORF3a | 256 | V256del | GTT | --- | 193 | 193 | AV.1 | 0.974747 |
ORF3a | 256 | V256del | GTT | --- | 186 | 186 | AY.103 | 0.001155 |
ORF3a | 256 | V256F | Gtt | Ttt | 175 | 175 | B.1.617.2 | 0.000659 |
ORF3a | 256 | V256D | gTt | gAt | 174 | 174 | AY.43 | 0.000771 |
ORF3a | 256 | V256del | GTT | --- | 171 | 171 | B.1.2 | 0.001506 |
ORF3a | 256 | V256del | GTT | --- | 161 | 161 | AY.43 | 0.000713 |
ORF3a | 256 | V256V | gtT | gtC | 157 | 157 | B.1.532 | 0.975155 |
ORF3a | 256 | V256del | GTT | --- | 146 | 146 | B.1.160 | 0.004553 |
ORF3a | 256 | V256S | GTt | AGt | 76 | 143 | All | 0.000015 |
ORF3a | 256 | V256S | GTT | AGC | 67 | 143 | All | 0.000013 |
ORF3a | 256 | V256del1 | gtT | gt- | 120 | 141 | B.1.1.7 | 0.000107 |
ORF3a | 256 | V256del1 | Gtt | -tt | 20 | 141 | B.1.1.7 | 0.000018 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 141 | B.1.1.7 | 0.000001 |
ORF3a | 256 | V256D | gTt | gAt | 141 | 141 | B.1.258 | 0.009383 |
ORF3a | 256 | V256del | GTT | --- | 139 | 139 | B.1.526 | 0.003267 |
ORF3a | 256 | V256F | Gtt | Ttt | 130 | 130 | AY.103 | 0.000807 |
ORF3a | 256 | V256del | GTT | --- | 130 | 130 | AY.25 | 0.000782 |
ORF3a | 256 | V256I | Gtt | Att | 122 | 122 | B.1.617.2 | 0.000459 |
ORF3a | 256 | V256F | Gtt | Ttt | 120 | 120 | B.1 | 0.001099 |
ORF3a | 256 | V256F | Gtt | Ttt | 112 | 112 | AY.4.2 | 0.002429 |
ORF3a | 256 | V256F | Gtt | Ttt | 109 | 109 | B.1.351 | 0.00324 |
ORF3a | 256 | V256I | Gtt | Att | 103 | 103 | AY.44 | 0.000627 |
ORF3a | 256 | V256D | gTt | gAt | 103 | 103 | B.1.177.15 | 0.064984 |
ORF3a | 256 | V256S | GTt | AGt | 47 | 89 | B.1.621 | 0.00416 |
ORF3a | 256 | V256S | GTT | AGC | 42 | 89 | B.1.621 | 0.003718 |
ORF3a | 256 | V256I | Gtt | Att | 45 | 87 | B.1.621 | 0.003983 |
ORF3a | 256 | V256I | GtT | AtC | 42 | 87 | B.1.621 | 0.003718 |
ORF3a | 256 | V256V | gtT | gtC | 82 | 85 | AY.4 | 0.000128 |
ORF3a | 256 | V256V | gtT | gtA | 3 | 85 | AY.4 | 0.000005 |
ORF3a | 256 | V256D | gTt | gAt | 84 | 84 | AY.4 | 0.000131 |
ORF3a | 256 | V256I | Gtt | Att | 83 | 83 | AY.100 | 0.003819 |
ORF3a | 256 | V256F | Gtt | Ttt | 77 | 77 | AY.3 | 0.000766 |
ORF3a | 256 | V256F | Gtt | Ttt | 77 | 77 | AY.5 | 0.00159 |
ORF3a | 256 | V256A | gTt | gCt | 73 | 73 | AY.4 | 0.000114 |
ORF3a | 256 | V256del | GTT | --- | 72 | 72 | B.1.1.214 | 0.003993 |
ORF3a | 256 | V256del | GTT | --- | 72 | 72 | B.1.517 | 0.030743 |
ORF3a | 256 | V256del | GTT | --- | 65 | 65 | B.1.243.2 | 0.942029 |
ORF3a | 256 | V256V | gtT | gtC | 56 | 63 | B.1.1.7 | 0.00005 |
ORF3a | 256 | V256V | gtT | gtG | 5 | 63 | B.1.1.7 | 0.000004 |
ORF3a | 256 | V256V | gtT | gtA | 2 | 63 | B.1.1.7 | 0.000002 |
ORF3a | 256 | V256A | gTt | gCt | 62 | 62 | B.1.617.2 | 0.000233 |
ORF3a | 256 | V256del | GTT | --- | 57 | 57 | B.1.619.1 | 0.036562 |
ORF3a | 256 | V256F | Gtt | Ttt | 56 | 56 | AY.33 | 0.00374 |
ORF3a | 256 | V256del | GTT | --- | 56 | 56 | B.1.429 | 0.001318 |
ORF3a | 256 | V256D | gTt | gAt | 56 | 56 | B.1.617.2 | 0.000211 |
ORF3a | 256 | V256F | Gtt | Ttt | 55 | 55 | AY.102 | 0.001458 |
ORF3a | 256 | V256I | Gtt | Att | 54 | 54 | B.1.1.7 | 0.000048 |
ORF3a | 256 | V256I | Gtt | Att | 51 | 51 | AY.4 | 0.000079 |
ORF3a | 256 | V256del | GTT | --- | 51 | 51 | B.1.1.519 | 0.002025 |
ORF3a | 256 | V256del | GTT | --- | 50 | 50 | B.1.177 | 0.000658 |
ORF3a | 256 | V256S | GTt | AGt | 26 | 49 | AY.113 | 0.003702 |
ORF3a | 256 | V256S | GTT | AGC | 23 | 49 | AY.113 | 0.003275 |
ORF3a | 256 | V256del | GTT | --- | 48 | 48 | AY.3 | 0.000477 |
ORF3a | 256 | V256I | Gtt | Att | 24 | 47 | AY.113 | 0.003417 |
ORF3a | 256 | V256I | GtT | AtC | 23 | 47 | AY.113 | 0.003275 |
ORF3a | 256 | V256F | Gtt | Ttt | 47 | 47 | AY.44 | 0.000286 |
ORF3a | 256 | V256del1 | GTT | -NN | 25 | 47 | B.1.621 | 0.002213 |
ORF3a | 256 | V256del1 | Gtt | -tt | 11 | 47 | B.1.621 | 0.000974 |
ORF3a | 256 | V256del1 | GtT | -tN | 10 | 47 | B.1.621 | 0.000885 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 47 | B.1.621 | 0.000089 |
ORF3a | 256 | V256del2 | gTT | g-- | 46 | 46 | AY.103 | 0.000286 |
ORF3a | 256 | V256del | GTT | --- | 45 | 45 | AY.14 | 0.003961 |
ORF3a | 256 | V256del | GTT | --- | 44 | 44 | AY.47 | 0.001369 |
ORF3a | 256 | V256D | gTt | gAt | 44 | 44 | B.1.177 | 0.000579 |
ORF3a | 256 | V256del1 | gtT | gt- | 34 | 44 | B.1.617.2 | 0.000128 |
ORF3a | 256 | V256del1 | Gtt | -tt | 10 | 44 | B.1.617.2 | 0.000038 |
ORF3a | 256 | V256D | gTt | gAt | 43 | 43 | B.1 | 0.000394 |
ORF3a | 256 | V256del | GTT | --- | 41 | 41 | AY.26 | 0.001161 |
ORF3a | 256 | V256del | GTT | --- | 40 | 40 | AY.9.2 | 0.001469 |
ORF3a | 256 | V256F | Gtt | Ttt | 40 | 40 | AY.98.1 | 0.001937 |
ORF3a | 256 | V256del | GTT | --- | 40 | 40 | C.37 | 0.004643 |
ORF3a | 256 | V256I | Gtt | Att | 39 | 39 | AY.3 | 0.000388 |
ORF3a | 256 | V256F | Gtt | Ttt | 38 | 38 | AY.29 | 0.000599 |
ORF3a | 256 | V256del1 | gtT | gt- | 37 | 38 | AY.4.2 | 0.000802 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 38 | AY.4.2 | 0.000022 |
ORF3a | 256 | V256del1 | Gtt | -tt | 19 | 34 | AY.44 | 0.000116 |
ORF3a | 256 | V256del1 | gtT | gt- | 14 | 34 | AY.44 | 0.000085 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 34 | AY.44 | 0.000006 |
ORF3a | 256 | V256D | gTt | gAt | 34 | 34 | B.1.526 | 0.000799 |
ORF3a | 256 | V256del1 | gtT | gt- | 31 | 33 | B.1.2 | 0.000273 |
ORF3a | 256 | V256del1 | Gtt | -tt | 2 | 33 | B.1.2 | 0.000018 |
ORF3a | 256 | V256I | Gtt | Att | 32 | 32 | AY.25 | 0.000192 |
ORF3a | 256 | V256D | gTt | gAt | 32 | 32 | AY.36 | 0.004743 |
ORF3a | 256 | V256del | GTT | --- | 31 | 31 | B.1.234 | 0.00409 |
ORF3a | 256 | V256del1 | gtT | gt- | 29 | 30 | AY.75 | 0.001625 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 30 | AY.75 | 0.000056 |
ORF3a | 256 | V256del | GTT | --- | 30 | 30 | B.1.243 | 0.002088 |
ORF3a | 256 | V256del | GTT | --- | 28 | 28 | AY.5 | 0.000578 |
ORF3a | 256 | V256D | gTt | gAt | 27 | 27 | AY.25 | 0.000162 |
ORF3a | 256 | V256del | GTT | --- | 27 | 27 | AY.36 | 0.004002 |
ORF3a | 256 | V256D | gTt | gAt | 27 | 27 | AY.44 | 0.000164 |
ORF3a | 256 | V256D | gTt | gAt | 26 | 26 | P.1 | 0.00041 |
ORF3a | 256 | V256del | GTT | --- | 25 | 25 | AY.10 | 0.013249 |
ORF3a | 256 | V256del2 | gTT | g-- | 25 | 25 | AY.4 | 0.000039 |
ORF3a | 256 | V256del2 | gTT | g-- | 25 | 25 | AY.43 | 0.000111 |
ORF3a | 256 | V256del1 | gtT | gt- | 23 | 24 | AY.103 | 0.000143 |
ORF3a | 256 | V256del1 | gTt | g-t | 1 | 24 | AY.103 | 0.000006 |
ORF3a | 256 | V256I | Gtt | Att | 23 | 23 | AY.110 | 0.002592 |
ORF3a | 256 | V256del | GTT | --- | 23 | 23 | AY.117 | 0.001944 |
ORF3a | 256 | V256V | gtT | gtC | 23 | 23 | AY.120 | 0.000855 |
ORF3a | 256 | V256F | Gtt | Ttt | 23 | 23 | AY.47 | 0.000715 |
ORF3a | 256 | V256del | GTT | --- | 23 | 23 | AY.75 | 0.001289 |
ORF3a | 256 | V256V | gtT | gtC | 23 | 23 | B.1.243 | 0.0016 |
ORF3a | 256 | V256D | gTt | gAt | 22 | 22 | B.1.160 | 0.000686 |
ORF3a | 256 | V256del | GTT | --- | 21 | 21 | AY.102 | 0.000557 |
ORF3a | 256 | V256del1 | gtT | gt- | 20 | 21 | AY.25 | 0.00012 |
ORF3a | 256 | V256del1 | GtT | Tt- | 1 | 21 | AY.25 | 0.000006 |
ORF3a | 256 | V256del1 | gtT | gt- | 21 | 21 | AY.3 | 0.000209 |
ORF3a | 256 | V256del1 | gtT | gt- | 20 | 21 | AY.43 | 0.000089 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 21 | AY.43 | 0.000004 |
ORF3a | 256 | V256del | GTT | --- | 21 | 21 | P.1 | 0.000331 |
ORF3a | 256 | V256del | GTT | --- | 20 | 20 | AY.100 | 0.00092 |
ORF3a | 256 | V256del1 | gtT | gt- | 15 | 19 | AY.39.1 | 0.000594 |
ORF3a | 256 | V256del1 | Gtt | -tt | 4 | 19 | AY.39.1 | 0.000158 |
ORF3a | 256 | V256F | Gtt | Ttt | 19 | 19 | B.1.177 | 0.00025 |
ORF3a | 256 | V256D | gTt | gAt | 19 | 19 | B.1.2 | 0.000167 |
ORF3a | 256 | V256F | Gtt | Ttt | 19 | 19 | B.1.227 | 0.904762 |
ORF3a | 256 | V256del | GTT | --- | 19 | 19 | B.1.351 | 0.000565 |
ORF3a | 256 | V256del | GTT | --- | 18 | 18 | AY.39 | 0.000445 |
ORF3a | 256 | V256del | GTT | --- | 18 | 18 | AY.9.1 | 0.001507 |
ORF3a | 256 | V256del | GTT | --- | 17 | 17 | AY.119 | 0.0006 |
ORF3a | 256 | V256del | GTT | --- | 17 | 17 | AY.20 | 0.000661 |
ORF3a | 256 | V256I | Gtt | Att | 17 | 17 | AY.23 | 0.001186 |
ORF3a | 256 | V256F | Gtt | Ttt | 17 | 17 | AY.25 | 0.000102 |
ORF3a | 256 | V256del | GTT | --- | 17 | 17 | AY.29 | 0.000268 |
ORF3a | 256 | V256D | gTt | gAt | 17 | 17 | B.1.1 | 0.000308 |
ORF3a | 256 | V256F | Gtt | Ttt | 17 | 17 | B.1.1 | 0.000308 |
ORF3a | 256 | V256I | Gtt | Att | 16 | 16 | AY.118 | 0.001002 |
ORF3a | 256 | V256I | Gtt | Att | 16 | 16 | AY.43 | 0.000071 |
ORF3a | 256 | V256F | Gtt | Ttt | 16 | 16 | B.1.526 | 0.000376 |
ORF3a | 256 | V256del | GTT | --- | 16 | 16 | B.1.623 | 0.008584 |
ORF3a | 256 | V256del | GTT | --- | 15 | 15 | A | 0.005805 |
ORF3a | 256 | V256D | gTt | gAt | 15 | 15 | AY.26 | 0.000425 |
ORF3a | 256 | V256F | Gtt | Ttt | 15 | 15 | P.2 | 0.0028 |
ORF3a | 256 | V256F | Gtt | Ttt | 14 | 14 | AY.46 | 0.001457 |
ORF3a | 256 | V256del1 | Gtt | -tt | 10 | 14 | B.1.177 | 0.000132 |
ORF3a | 256 | V256del1 | gtT | gt- | 4 | 14 | B.1.177 | 0.000053 |
ORF3a | 256 | V256del | GTT | --- | 14 | 14 | B.1.220 | 0.152174 |
ORF3a | 256 | V256del1 | Gtt | -tt | 7 | 14 | B.1.221 | 0.000497 |
ORF3a | 256 | V256del1 | gtT | gt- | 7 | 14 | B.1.221 | 0.000497 |
ORF3a | 256 | V256V | gtT | gtC | 14 | 14 | B.1.561 | 0.005558 |
ORF3a | 256 | V256V | gtT | gtC | 13 | 14 | B.1.617.2 | 0.000049 |
ORF3a | 256 | V256V | gtT | gtA | 1 | 14 | B.1.617.2 | 0.000004 |
ORF3a | 256 | V256G | gTt | gGt | 12 | 13 | All | 0.000002 |
ORF3a | 256 | V256G | gTT | gGA | 1 | 13 | All | 0 |
ORF3a | 256 | V256del | GTT | --- | 13 | 13 | AY.113 | 0.001851 |
ORF3a | 256 | V256F | Gtt | Ttt | 13 | 13 | AY.20 | 0.000505 |
ORF3a | 256 | V256del1 | gtT | gt- | 13 | 13 | AY.29 | 0.000205 |
ORF3a | 256 | V256F | Gtt | Ttt | 13 | 13 | AY.42 | 0.000523 |
ORF3a | 256 | V256A | gTt | gCt | 13 | 13 | AY.43 | 0.000058 |
ORF3a | 256 | V256D | gTt | gAt | 13 | 13 | AY.99.2 | 0.001198 |
ORF3a | 256 | V256D | gTt | gAt | 13 | 13 | B.1.595 | 0.003392 |
ORF3a | 256 | V256del | GTT | --- | 12 | 12 | AY.24 | 0.005172 |
ORF3a | 256 | V256F | Gtt | Ttt | 12 | 12 | AY.61 | 0.001257 |
ORF3a | 256 | V256del | GTT | --- | 12 | 12 | AY.91 | 0.008766 |
ORF3a | 256 | V256del | GTT | --- | 12 | 12 | B | 0.001534 |
ORF3a | 256 | V256del1 | gtT | gt- | 8 | 12 | B.1 | 0.000073 |
ORF3a | 256 | V256del1 | GTT | -NN | 4 | 12 | B.1 | 0.000037 |
ORF3a | 256 | V256del | GTT | --- | 12 | 12 | B.1.177.86 | 0.002201 |
ORF3a | 256 | V256del | GTT | --- | 12 | 12 | P.1.12 | 0.005808 |
ORF3a | 256 | V256F | Gtt | Ttt | 12 | 12 | Q.1 | 0.001516 |
ORF3a | 256 | V256del | GTT | --- | 11 | 11 | AY.23 | 0.000767 |
ORF3a | 256 | V256del | GTT | --- | 11 | 11 | B.1.1.306 | 0.004822 |
ORF3a | 256 | V256D | gTt | gAt | 11 | 11 | B.1.1.37 | 0.002122 |
ORF3a | 256 | V256del | GTT | --- | 11 | 11 | B.1.427 | 0.000555 |
ORF3a | 256 | V256del | GTT | --- | 11 | 11 | B.1.639 | 0.23913 |
ORF3a | 256 | V256del | GTT | --- | 11 | 11 | P.2 | 0.002053 |
ORF3a | 256 | V256D | gTt | gAt | 10 | 10 | AY.39 | 0.000247 |
ORF3a | 256 | V256del1 | gtT | gt- | 5 | 10 | AY.46.4 | 0.000823 |
ORF3a | 256 | V256del1 | Gtt | -tt | 5 | 10 | AY.46.4 | 0.000823 |
ORF3a | 256 | V256F | Gtt | Ttt | 10 | 10 | AY.7.1 | 0.001127 |
ORF3a | 256 | V256del | GTT | --- | 10 | 10 | B.1.1.171 | 0.036765 |
ORF3a | 256 | V256del | GTT | --- | 10 | 10 | B.1.110.3 | 0.007184 |
ORF3a | 256 | V256D | gTt | gAt | 10 | 10 | B.1.177.86 | 0.001835 |
ORF3a | 256 | V256del1 | GTT | -NN | 5 | 10 | B.1.628 | 0.001762 |
ORF3a | 256 | V256del1 | Gtt | -tt | 2 | 10 | B.1.628 | 0.000705 |
ORF3a | 256 | V256del1 | GtT | -tN | 2 | 10 | B.1.628 | 0.000705 |
ORF3a | 256 | V256del1 | GtT | Nt- | 1 | 10 | B.1.628 | 0.000352 |
ORF3a | 256 | V256F | Gtt | Ttt | 10 | 10 | B.1.637 | 0.000731 |
ORF3a | 256 | V256D | gTt | gAt | 10 | 10 | Q.2 | 0.006135 |
ORF3a | 256 | V256del1 | gtT | gt- | 9 | 9 | A | 0.003483 |
ORF3a | 256 | V256I | Gtt | Att | 9 | 9 | AY.103 | 0.000056 |
ORF3a | 256 | V256F | Gtt | Ttt | 9 | 9 | AY.119 | 0.000318 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | AY.120 | 0.000335 |
ORF3a | 256 | V256D | gTt | gAt | 9 | 9 | AY.20 | 0.00035 |
ORF3a | 256 | V256D | gTt | gAt | 9 | 9 | AY.3 | 0.00009 |
ORF3a | 256 | V256F | Gtt | Ttt | 9 | 9 | AY.39 | 0.000222 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | AY.39.1 | 0.000357 |
ORF3a | 256 | V256del1 | gtT | gt- | 7 | 9 | AY.5 | 0.000145 |
ORF3a | 256 | V256del1 | gTT | g-N | 2 | 9 | AY.5 | 0.000041 |
ORF3a | 256 | V256I | Gtt | Att | 9 | 9 | AY.98.1 | 0.000436 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | B.1.1.141 | 0.018109 |
ORF3a | 256 | V256D | gTt | gAt | 9 | 9 | B.1.243 | 0.000626 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | B.1.369 | 0.002567 |
ORF3a | 256 | V256del1 | gtT | gt- | 7 | 9 | B.1.429 | 0.000165 |
ORF3a | 256 | V256del1 | Gtt | -tt | 2 | 9 | B.1.429 | 0.000047 |
ORF3a | 256 | V256del2 | gTT | g-- | 9 | 9 | B.1.526 | 0.000212 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | B.1.596 | 0.000784 |
ORF3a | 256 | V256del | GTT | --- | 9 | 9 | C.13 | 0.230769 |
ORF3a | 256 | V256D | gTt | gAt | 8 | 8 | AY.47 | 0.000249 |
ORF3a | 256 | V256del | GTT | --- | 8 | 8 | AY.98.1 | 0.000387 |
ORF3a | 256 | V256V | gtT | gtC | 7 | 8 | B.1.1 | 0.000127 |
ORF3a | 256 | V256del1 | Gtt | -tt | 6 | 8 | B.1.1 | 0.000109 |
ORF3a | 256 | V256del1 | GTT | -NN | 1 | 8 | B.1.1 | 0.000018 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 8 | B.1.1 | 0.000018 |
ORF3a | 256 | V256V | gtT | gtG | 1 | 8 | B.1.1 | 0.000018 |
ORF3a | 256 | V256D | gTt | gAt | 8 | 8 | B.1.1.1 | 0.002614 |
ORF3a | 256 | V256del | GTT | --- | 8 | 8 | B.1.1.282 | 0.093023 |
ORF3a | 256 | V256del | GTT | --- | 8 | 8 | B.1.1.432 | 0.010127 |
ORF3a | 256 | V256del1 | gtT | gt- | 8 | 8 | B.1.177.21 | 0.000612 |
ORF3a | 256 | V256del | GTT | --- | 8 | 8 | B.1.177.9 | 0.010652 |
ORF3a | 256 | V256V | gtT | gtC | 8 | 8 | B.1.36.22 | 0.009662 |
ORF3a | 256 | V256F | Gtt | Ttt | 8 | 8 | B.1.558 | 0.03653 |
ORF3a | 256 | V256del2 | gTT | g-- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 256 | V256V | gtT | gtC | 8 | 8 | P.2 | 0.001493 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | A.27 | 0.011589 |
ORF3a | 256 | V256L | Gtt | Ctt | 7 | 7 | All | 0.000001 |
ORF3a | 256 | V256D | gTt | gAt | 7 | 7 | AY.29 | 0.00011 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | AY.4.2 | 0.000152 |
ORF3a | 256 | V256del2 | gTT | g-- | 7 | 7 | AY.44 | 0.000043 |
ORF3a | 256 | V256F | Gtt | Ttt | 7 | 7 | AY.46.6 | 0.000505 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | AY.88 | 0.006189 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | AY.9 | 0.000473 |
ORF3a | 256 | V256F | Gtt | Ttt | 7 | 7 | AY.98 | 0.000553 |
ORF3a | 256 | V256V | gtT | gtC | 5 | 7 | B.1 | 0.000046 |
ORF3a | 256 | V256V | gtT | gtA | 2 | 7 | B.1 | 0.000018 |
ORF3a | 256 | V256A | gTt | gCt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 256 | V256del2 | gTT | g-- | 7 | 7 | B.1.177.11 | 0.011885 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | B.1.221 | 0.000497 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | B.1.258.17 | 0.000728 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | B.1.466.2 | 0.002739 |
ORF3a | 256 | V256F | Gtt | Ttt | 7 | 7 | B.1.517.1 | 0.036842 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF3a | 256 | V256D | gTt | gAt | 7 | 7 | B.1.621.1 | 0.003541 |
ORF3a | 256 | V256del | GTT | --- | 7 | 7 | Q.8 | 0.001154 |
ORF3a | 256 | V256D | gTt | gAt | 6 | 6 | AY.102 | 0.000159 |
ORF3a | 256 | V256V | gtT | gtC | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 256 | V256del1 | gtT | gt- | 6 | 6 | AY.113 | 0.000854 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | AY.114 | 0.001387 |
ORF3a | 256 | V256I | Gtt | Att | 6 | 6 | AY.119 | 0.000212 |
ORF3a | 256 | V256F | Gtt | Ttt | 6 | 6 | AY.39.1 | 0.000238 |
ORF3a | 256 | V256del1 | gtT | gt- | 6 | 6 | AY.42 | 0.000241 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | AY.6 | 0.000247 |
ORF3a | 256 | V256D | gTt | gAt | 6 | 6 | AY.9.2 | 0.00022 |
ORF3a | 256 | V256del1 | gtT | gt- | 5 | 6 | AY.99.2 | 0.000461 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 6 | AY.99.2 | 0.000092 |
ORF3a | 256 | V256del1 | gtT | gt- | 6 | 6 | B | 0.000767 |
ORF3a | 256 | V256del2 | gTT | g-- | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.1.198 | 0.008811 |
ORF3a | 256 | V256F | Gtt | Ttt | 6 | 6 | B.1.1.207 | 0.007092 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.1.25 | 0.003411 |
ORF3a | 256 | V256del1 | gtT | gt- | 6 | 6 | B.1.1.372 | 0.004132 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.1.413 | 0.041379 |
ORF3a | 256 | V256D | gTt | gAt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.128 | 0.003812 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.160.29 | 0.025316 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.177.83 | 0.008889 |
ORF3a | 256 | V256del2 | GTt | --t | 6 | 6 | B.1.177.84 | 0.04 |
ORF3a | 256 | V256del2 | gTT | g-- | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 256 | V256del | GTT | --- | 6 | 6 | B.1.36 | 0.000875 |
ORF3a | 256 | V256del1 | gtT | gt- | 5 | 6 | B.1.526 | 0.000118 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 6 | B.1.526 | 0.000024 |
ORF3a | 256 | V256F | Gtt | Ttt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF3a | 256 | V256D | gTt | gAt | 6 | 6 | B.1.632 | 0.040268 |
ORF3a | 256 | V256del1 | Gtt | -tt | 3 | 6 | P.1 | 0.000047 |
ORF3a | 256 | V256del1 | gtT | gt- | 3 | 6 | P.1 | 0.000047 |
ORF3a | 256 | V256I | Gtt | Att | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.106 | 0.001674 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.12 | 0.00158 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.121 | 0.000677 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.13 | 0.000805 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.16 | 0.001898 |
ORF3a | 256 | V256del2 | gTT | g-- | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.26 | 0.000142 |
ORF3a | 256 | V256I | Gtt | Att | 4 | 5 | AY.26 | 0.000113 |
ORF3a | 256 | V256I | GtT | AtC | 1 | 5 | AY.26 | 0.000028 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.36 | 0.000741 |
ORF3a | 256 | V256del1 | gtT | gt- | 3 | 5 | AY.39 | 0.000074 |
ORF3a | 256 | V256del1 | Gtt | -tt | 2 | 5 | AY.39 | 0.000049 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.4.5 | 0.000537 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 256 | V256I | Gtt | Att | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.68 | 0.001369 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | AY.7 | 0.00098 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | AY.87 | 0.004163 |
ORF3a | 256 | V256del1 | gtT | gt- | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 256 | V256A | gTt | gCt | 5 | 5 | B.1 | 0.000046 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.1.189 | 0.007564 |
ORF3a | 256 | V256A | gTt | gCt | 5 | 5 | B.1.1.243 | 0.020408 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.1.297 | 0.011186 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.1.381 | 0.2 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | B.1.189 | 0.021459 |
ORF3a | 256 | V256D | gTt | gAt | 5 | 5 | B.1.240 | 0.001078 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.247 | 0.074627 |
ORF3a | 256 | V256del2 | gTT | g-- | 3 | 5 | B.1.258 | 0.0002 |
ORF3a | 256 | V256del2 | GTt | --t | 2 | 5 | B.1.258 | 0.000133 |
ORF3a | 256 | V256D | gTt | gAt | 5 | 5 | B.1.351 | 0.000149 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.389 | 0.00501 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 256 | V256D | gTt | gAt | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 256 | V256del2 | GTt | --t | 5 | 5 | B.1.627 | 0.010101 |
ORF3a | 256 | V256del2 | GTt | --t | 5 | 5 | B.1.628 | 0.001762 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | P.1.14 | 0.000239 |
ORF3a | 256 | V256del1 | gtT | gt- | 5 | 5 | P.2 | 0.000933 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | P.5 | 0.068493 |
ORF3a | 256 | V256F | Gtt | Ttt | 5 | 5 | Q.3 | 0.000725 |
ORF3a | 256 | V256del | GTT | --- | 5 | 5 | R.1 | 0.00045 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | 0.222222 | |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | A.2 | 0.002647 |
ORF3a | 256 | V256F | Gtt | Ttt | 4 | 4 | AY.100 | 0.000184 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 256 | V256F | Gtt | Ttt | 4 | 4 | AY.116 | 0.001147 |
ORF3a | 256 | V256F | Gtt | Ttt | 4 | 4 | AY.120 | 0.000149 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 256 | V256F | Gtt | Ttt | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 256 | V256del1 | GTT | -NN | 3 | 4 | AY.14 | 0.000264 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 4 | AY.14 | 0.000088 |
ORF3a | 256 | V256del2 | gTT | g-- | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | AY.38 | 0.001997 |
ORF3a | 256 | V256V | gtT | gtC | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | AY.68 | 0.001095 |
ORF3a | 256 | V256del1 | gtT | gt- | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | AZ.2 | 0.003284 |
ORF3a | 256 | V256del2 | gTT | g-- | 4 | 4 | B.1 | 0.000037 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.1.1 | 0.001307 |
ORF3a | 256 | V256A | gTt | gCt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.1.317 | 0.001647 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.157 | 0.01194 |
ORF3a | 256 | V256del2 | gTT | g-- | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.177.4 | 0.000844 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | B.1.258.11 | 0.001585 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 256 | V256F | Gtt | Ttt | 4 | 4 | B.1.609 | 0.001918 |
ORF3a | 256 | V256del2 | GTt | --t | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 256 | V256V | gtT | gtC | 4 | 4 | B.1.634 | 0.013699 |
ORF3a | 256 | V256del2 | gTT | g-- | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | D.2 | 0.0003 |
ORF3a | 256 | V256I | Gtt | Att | 4 | 4 | P.1 | 0.000063 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | P.1.10 | 0.001078 |
ORF3a | 256 | V256D | gTt | gAt | 4 | 4 | P.1.14 | 0.000191 |
ORF3a | 256 | V256del | GTT | --- | 4 | 4 | P.1.16 | 0.001496 |
ORF3a | 256 | V256del1 | gtT | gt- | 3 | 3 | A.29 | 0.015957 |
ORF3a | 256 | V256del1 | gtT | gt- | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 256 | V256del1 | gtT | gt- | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 256 | V256A | gTt | gCt | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | AY.35 | 0.000699 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 256 | V256V | gtT | gtC | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 256 | V256del2 | gTT | g-- | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 256 | V256del2 | gTT | g-- | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 256 | V256V | gtT | gtC | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 256 | V256A | gTt | gCt | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.165 | 0.046154 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.1.170 | 0.003741 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | B.1.1.174 | 0.010135 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 256 | V256A | gTt | gCt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.258 | 0.009772 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.1.311 | 0.001074 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | B.1.1.348 | 0.002389 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 256 | V256I | Gtt | Att | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.177.73 | 0.001699 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.177.75 | 0.003122 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | B.1.177.81 | 0.000568 |
ORF3a | 256 | V256A | gTt | gCt | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.206 | 0.002447 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.232 | 0.001612 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.240 | 0.000647 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 256 | V256del1 | GTT | -NN | 2 | 3 | B.1.243.2 | 0.028986 |
ORF3a | 256 | V256del1 | GTt | -Nt | 1 | 3 | B.1.243.2 | 0.014493 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.265 | 0.003812 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.280 | 0.021429 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 256 | V256D | gTt | gAt | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.380 | 0.019868 |
ORF3a | 256 | V256del2 | gTT | g-- | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.524 | 0.004219 |
ORF3a | 256 | V256A | gTt | gCt | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 256 | V256V | gtT | gtC | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.533 | 0.028846 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | B.1.576 | 0.00272 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | B.1.582 | 0.001472 |
ORF3a | 256 | V256del2 | GTt | --t | 3 | 3 | B.1.631 | 0.010101 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 3 | B.1.637 | 0.000146 |
ORF3a | 256 | V256del1 | GtT | Nt- | 1 | 3 | B.1.637 | 0.000073 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | C.26 | 0.022059 |
ORF3a | 256 | V256del | GTT | --- | 3 | 3 | C.37.1 | 0.007853 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF3a | 256 | V256V | gtT | gtA | 2 | 3 | D.2 | 0.00015 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 3 | D.2 | 0.000075 |
ORF3a | 256 | V256F | Gtt | Ttt | 3 | 3 | L.1 | 0.005714 |
ORF3a | 256 | V256V | gtT | gtC | 3 | 3 | P.1 | 0.000047 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | A.28 | 0.005291 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 256 | V256E | gTT | gAG | 2 | 2 | All | 0 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AU.1 | 0.002532 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 256 | V256S | GTT | AGC | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 256 | V256S | GTt | AGt | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 256 | V256I | GtT | AtC | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 256 | V256S | GTT | AGC | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 256 | V256S | GTt | AGt | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.28 | 0.003781 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 256 | V256A | gTt | gCt | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 256 | V256I | Gtt | Att | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 256 | V256I | Gtt | Att | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 256 | V256L | Gtt | Ctt | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 256 | V256A | gTt | gCt | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 256 | V256I | Gtt | Att | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.64 | 0.00119 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.65 | 0.001066 |
ORF3a | 256 | V256A | gTt | gCt | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 256 | V256V | gtT | gtA | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AY.95 | 0.001522 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | AY.97 | 0.003401 |
ORF3a | 256 | V256I | Gtt | Att | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | AZ.1 | 0.001735 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | B | 0.000256 |
ORF3a | 256 | V256A | gTt | gCt | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | B.1.1.115 | 0.017857 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.153 | 0.002191 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.208 | 0.02439 |
ORF3a | 256 | V256del1 | Gtt | -tt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | B.1.1.230 | 0.018349 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.397 | 0.004505 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 256 | V256L | Gtt | Ctt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 256 | V256A | gTt | gCt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.1.99 | 0.047619 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.111 | 0.00235 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.160.10 | 0.016129 |
ORF3a | 256 | V256del1 | gtT | gt- | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.177.33 | 0.003289 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.177.5 | 0.002484 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF3a | 256 | V256V | gtT | gtC | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.239 | 0.002442 |
ORF3a | 256 | V256I | Gtt | Att | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.320 | 0.002491 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.398 | 0.005952 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.409 | 0.001563 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.416 | 0.002538 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.425 | 0.005988 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.466.1 | 0.014388 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.474 | 0.003802 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.517 | 0.000854 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.551 | 0.002581 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.612 | 0.005305 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 256 | V256G | gTt | gGt | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.1.9.5 | 0.011364 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | B.55 | 0.0059 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | B.6 | 0.00182 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | C.37 | 0.000232 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | D.2 | 0.00015 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | N.9 | 0.011905 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 256 | V256del2 | gTT | g-- | 2 | 2 | P.1.10 | 0.000539 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | P.1.16 | 0.000748 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 256 | V256D | gTt | gAt | 2 | 2 | P.2 | 0.000373 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 256 | V256del | GTT | --- | 2 | 2 | Q.4 | 0.00091 |
ORF3a | 256 | V256F | Gtt | Ttt | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | A.1 | 0.000282 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | A.1 | 0.000282 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | A.19 | 0.009434 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | A.2 | 0.000662 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | A.2 | 0.000662 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | A.21 | 0.00277 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | A.27 | 0.001656 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | A.28 | 0.002646 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | A.5 | 0.001923 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 256 | V256Q | GTT | CAA | 1 | 1 | All | 0 |
ORF3a | 256 | V256P | GTt | CCt | 1 | 1 | All | 0 |
ORF3a | 256 | V256K | GTT | AAG | 1 | 1 | All | 0 |
ORF3a | 256 | V256M | GtT | AtG | 1 | 1 | All | 0 |
ORF3a | 256 | V256N | GTt | AAt | 1 | 1 | All | 0 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 256 | V256L | Gtt | Ctt | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 256 | V256S | GTt | AGt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 256 | V256L | Gtt | Ctt | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.66 | 0.00107 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.97 | 0.001701 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 256 | V256del2 | GTt | --t | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 256 | V256V | gtT | gtA | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1 | 0.000009 |
ORF3a | 256 | V256K | GTT | AAG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 256 | V256N | GTt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 256 | V256M | GtT | AtG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 256 | V256E | gTT | gAG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.117 | 0.009709 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.1.128 | 0.007092 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 256 | V256G | gTT | gGA | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.244 | 0.015385 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 256 | V256Q | GTT | CAA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.1.300 | 0.010753 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.308 | 0.011765 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.386 | 0.066667 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.430 | 0.041667 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.481 | 0.071429 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.5 | 0.008333 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 256 | V256P | GTt | CCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 256 | V256E | gTT | gAG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 256 | V256del2 | GTT | A-- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.160.33 | 0.004425 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.68 | 0.015152 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.178 | 0.02381 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.221.4 | 0.004167 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 256 | V256del1 | gTt | g-t | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.323 | 0.020833 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.351.1 | 0.038462 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.36.21 | 0.00216 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.36.37 | 0.002778 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.403 | 0.003268 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.404 | 0.001302 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.405 | 0.012346 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.411 | 0.003704 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.438 | 0.006536 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.438.4 | 0.021277 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.465 | 0.003802 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.516 | 0.001957 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 256 | V256del2 | GTt | --t | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.544 | 0.006024 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.570 | 0.002941 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.595.4 | 0.007299 |
ORF3a | 256 | V256del2 | GTT | A-- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.601 | 0.030303 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 256 | V256V | gtT | gtC | 1 | 1 | B.1.610 | 0.003546 |
ORF3a | 256 | V256L | Gtt | Ctt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 256 | V256V | gtT | gtA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 256 | V256G | gTt | gGt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 256 | V256del1 | Gtt | -tt | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 256 | V256del1 | GtT | -tN | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.1.632 | 0.006711 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | B.10 | 0.008264 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.4 | 0.002208 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | B.40 | 0.000364 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | B.6 | 0.00091 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | B.6 | 0.00091 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | C.1 | 0.002392 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | C.1.2 | 0.004255 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | C.16 | 0.00106 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | C.30.1 | 0.006711 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | C.35 | 0.000774 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | C.37 | 0.000116 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | C.6 | 0.037037 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | N.6 | 0.007092 |
ORF3a | 256 | V256A | gTt | gCt | 1 | 1 | P.1 | 0.000016 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 256 | V256del2 | gTT | g-- | 1 | 1 | P.2 | 0.000187 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | P.2 | 0.000187 |
ORF3a | 256 | V256I | Gtt | Att | 1 | 1 | P.5 | 0.013699 |
ORF3a | 256 | V256del | GTT | --- | 1 | 1 | P.6 | 0.003145 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 256 | V256F | Gtt | Ttt | 1 | 1 | Q.2 | 0.000613 |
ORF3a | 256 | V256V | gtT | gtG | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 256 | V256D | gTt | gAt | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 256 | V256del1 | gtT | gt- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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