CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 255 | V255F | nonsyn | Gtt | Ttt | 1474 | 1474 | 1 | 26155-26157 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 255 | V255F | Gtt | Ttt | 1474 | 1474 | All | 0.000282 |
ORF3a | 255 | V255F | Gtt | Ttt | 300 | 300 | AY.103 | 0.001863 |
ORF3a | 255 | V255F | Gtt | Ttt | 208 | 208 | AY.3 | 0.002069 |
ORF3a | 255 | V255F | Gtt | Ttt | 195 | 195 | B.1.617.2 | 0.000734 |
ORF3a | 255 | V255F | Gtt | Ttt | 117 | 117 | AY.7 | 0.022932 |
ORF3a | 255 | V255F | Gtt | Ttt | 95 | 95 | B.1.1.7 | 0.000085 |
ORF3a | 255 | V255F | Gtt | Ttt | 71 | 71 | AY.4 | 0.000111 |
ORF3a | 255 | V255F | Gtt | Ttt | 50 | 50 | AY.43 | 0.000222 |
ORF3a | 255 | V255F | Gtt | Ttt | 42 | 42 | B.1.1.372 | 0.028926 |
ORF3a | 255 | V255F | Gtt | Ttt | 37 | 37 | AY.102 | 0.000981 |
ORF3a | 255 | V255F | Gtt | Ttt | 36 | 36 | AY.46.6 | 0.002599 |
ORF3a | 255 | V255F | Gtt | Ttt | 29 | 29 | AY.54 | 0.002765 |
ORF3a | 255 | V255F | Gtt | Ttt | 28 | 28 | AY.44 | 0.00017 |
ORF3a | 255 | V255F | Gtt | Ttt | 27 | 27 | B.1.2 | 0.000238 |
ORF3a | 255 | V255F | Gtt | Ttt | 20 | 20 | B.1.351 | 0.000595 |
ORF3a | 255 | V255F | Gtt | Ttt | 20 | 20 | B.1.609 | 0.009588 |
ORF3a | 255 | V255F | Gtt | Ttt | 13 | 13 | B.1 | 0.000119 |
ORF3a | 255 | V255F | Gtt | Ttt | 13 | 13 | B.1.36.1 | 0.014823 |
ORF3a | 255 | V255F | Gtt | Ttt | 12 | 12 | B.1.258.11 | 0.004756 |
ORF3a | 255 | V255F | Gtt | Ttt | 8 | 8 | AY.39 | 0.000198 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | AY.5 | 0.000145 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | B.1.177.51 | 0.031963 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | B.1.526 | 0.000165 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | B.1.177.84 | 0.04 |
ORF3a | 255 | V255F | Gtt | Ttt | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | AY.46.4 | 0.000658 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | P.1 | 0.000063 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.10 | 0.00159 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.46.3 | 0.002801 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | B.1.1.315 | 0.025424 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.2 | 0.000712 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | P.2 | 0.000373 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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