CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 255 | V255del | del | GTT | --- | 4776 | 4776 | 1 | 26155-26157 | |
ORF3a | 255 | V255F | nonsyn | Gtt | Ttt | 1474 | 1474 | 1 | 26155-26157 | |
ORF3a | 255 | V255A | nonsyn | gTt | gCt | 1023 | 1023 | 1 | 26155-26157 | |
ORF3a | 255 | V255V | syn | gtT | gtG | 184 | 75 | 0.407609 | 26155-26157 | |
ORF3a | 255 | V255V | syn | gtT | gtC | 184 | 72 | 0.391304 | 26155-26157 | |
ORF3a | 255 | V255V | syn | gtT | gtA | 184 | 37 | 0.201087 | 26155-26157 | |
ORF3a | 255 | V255I | nonsyn | Gtt | Att | 151 | 151 | 1 | 26155-26157 | |
ORF3a | 255 | V255G | nonsyn | gTt | gGt | 136 | 74 | 0.544118 | 26155-26157 | |
ORF3a | 255 | V255G | nonsyn | gTT | gGG | 136 | 62 | 0.455882 | 26155-26157 | |
ORF3a | 255 | V255L | nonsyn | Gtt | Ctt | 118 | 64 | 0.542373 | 26155-26157 | |
ORF3a | 255 | V255L | nonsyn | GtT | CtG | 118 | 54 | 0.457627 | 26155-26157 | |
ORF3a | 255 | V255R | nonsyn | GTT | CGG | 108 | 54 | 0.5 | 26155-26157 | |
ORF3a | 255 | V255R | nonsyn | GTt | CGt | 108 | 54 | 0.5 | 26155-26157 | |
ORF3a | 255 | V255del2 | del | gTT | g-- | 60 | 54 | 0.9 | 26155-26157 | |
ORF3a | 255 | V255del2 | del | GTT | --N | 60 | 5 | 0.0833333 | 26155-26157 | |
ORF3a | 255 | V255del2 | del | GTt | --t | 60 | 1 | 0.0166667 | 26155-26157 | |
ORF3a | 255 | V255del1 | del | gtT | gt- | 42 | 31 | 0.738095 | 26155-26157 | |
ORF3a | 255 | V255del1 | del | Gtt | -tt | 42 | 5 | 0.119048 | 26155-26157 | |
ORF3a | 255 | V255del1 | del | gTt | g-t | 42 | 3 | 0.0714286 | 26155-26157 | |
ORF3a | 255 | V255del1 | del | GTt | -Ct | 42 | 2 | 0.047619 | 26155-26157 | |
ORF3a | 255 | V255del1 | del | gTT | g-C | 42 | 1 | 0.0238095 | 26155-26157 | |
ORF3a | 255 | V255D | nonsyn | gTt | gAt | 7 | 6 | 0.857143 | 26155-26157 | |
ORF3a | 255 | V255D | nonsyn | gTT | gAC | 7 | 1 | 0.142857 | 26155-26157 | |
ORF3a | 255 | V255S | nonsyn | GTt | AGt | 2 | 2 | 1 | 26155-26157 | |
ORF3a | 255 | V255P | nonsyn | GTt | CCt | 1 | 1 | 1 | 26155-26157 | |
ORF3a | 255 | V255T | nonsyn | GTt | ACt | 1 | 1 | 1 | 26155-26157 | |
ORF3a | 255 | V255Y | nonsyn | GTt | TAt | 1 | 1 | 1 | 26155-26157 | |
ORF3a | 255 | V255W | nonsyn | GTT | TGG | 1 | 1 | 1 | 26155-26157 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 255 | V255del | GTT | --- | 4776 | 4776 | All | 0.000913 |
ORF3a | 255 | V255F | Gtt | Ttt | 1474 | 1474 | All | 0.000282 |
ORF3a | 255 | V255del | GTT | --- | 1224 | 1224 | B.1.1.7 | 0.001096 |
ORF3a | 255 | V255A | gTt | gCt | 1023 | 1023 | All | 0.000196 |
ORF3a | 255 | V255del | GTT | --- | 767 | 767 | AY.4 | 0.001194 |
ORF3a | 255 | V255A | gTt | gCt | 492 | 492 | AY.3 | 0.004894 |
ORF3a | 255 | V255A | gTt | gCt | 373 | 373 | B.1.1.7 | 0.000334 |
ORF3a | 255 | V255F | Gtt | Ttt | 300 | 300 | AY.103 | 0.001863 |
ORF3a | 255 | V255del | GTT | --- | 246 | 246 | C.1 | 0.588517 |
ORF3a | 255 | V255del | GTT | --- | 233 | 233 | C.1.2 | 0.991489 |
ORF3a | 255 | V255del | GTT | --- | 214 | 214 | B.1.617.2 | 0.000806 |
ORF3a | 255 | V255F | Gtt | Ttt | 208 | 208 | AY.3 | 0.002069 |
ORF3a | 255 | V255F | Gtt | Ttt | 195 | 195 | B.1.617.2 | 0.000734 |
ORF3a | 255 | V255V | gtT | gtG | 75 | 184 | All | 0.000014 |
ORF3a | 255 | V255V | gtT | gtC | 72 | 184 | All | 0.000014 |
ORF3a | 255 | V255V | gtT | gtA | 37 | 184 | All | 0.000007 |
ORF3a | 255 | V255I | Gtt | Att | 151 | 151 | All | 0.000029 |
ORF3a | 255 | V255del | GTT | --- | 141 | 141 | AY.43 | 0.000625 |
ORF3a | 255 | V255G | gTt | gGt | 74 | 136 | All | 0.000014 |
ORF3a | 255 | V255G | gTT | gGG | 62 | 136 | All | 0.000012 |
ORF3a | 255 | V255del | GTT | --- | 124 | 124 | B.1.2 | 0.001092 |
ORF3a | 255 | V255L | Gtt | Ctt | 64 | 118 | All | 0.000012 |
ORF3a | 255 | V255L | GtT | CtG | 54 | 118 | All | 0.00001 |
ORF3a | 255 | V255F | Gtt | Ttt | 117 | 117 | AY.7 | 0.022932 |
ORF3a | 255 | V255R | GTT | CGG | 54 | 108 | All | 0.00001 |
ORF3a | 255 | V255R | GTt | CGt | 54 | 108 | All | 0.00001 |
ORF3a | 255 | V255del | GTT | --- | 105 | 105 | B.1.243 | 0.007306 |
ORF3a | 255 | V255F | Gtt | Ttt | 95 | 95 | B.1.1.7 | 0.000085 |
ORF3a | 255 | V255del | GTT | --- | 82 | 82 | B.1 | 0.000751 |
ORF3a | 255 | V255G | gTT | gGG | 38 | 76 | B.1.621 | 0.003364 |
ORF3a | 255 | V255G | gTt | gGt | 38 | 76 | B.1.621 | 0.003364 |
ORF3a | 255 | V255del | GTT | --- | 75 | 75 | B.1.177.21 | 0.005735 |
ORF3a | 255 | V255F | Gtt | Ttt | 71 | 71 | AY.4 | 0.000111 |
ORF3a | 255 | V255R | GTT | CGG | 34 | 68 | B.1.621 | 0.00301 |
ORF3a | 255 | V255R | GTt | CGt | 34 | 68 | B.1.621 | 0.00301 |
ORF3a | 255 | V255L | GtT | CtG | 34 | 68 | B.1.621 | 0.00301 |
ORF3a | 255 | V255L | Gtt | Ctt | 34 | 68 | B.1.621 | 0.00301 |
ORF3a | 255 | V255del | GTT | --- | 66 | 66 | B.1.351.2 | 0.01997 |
ORF3a | 255 | V255del | GTT | --- | 64 | 64 | B.1.1.291 | 0.047513 |
ORF3a | 255 | V255del | GTT | --- | 62 | 62 | AY.25 | 0.000373 |
ORF3a | 255 | V255del | GTT | --- | 62 | 62 | B.1.1 | 0.001125 |
ORF3a | 255 | V255del2 | gTT | g-- | 54 | 60 | All | 0.00001 |
ORF3a | 255 | V255del2 | GTT | --N | 5 | 60 | All | 0.000001 |
ORF3a | 255 | V255del2 | GTt | --t | 1 | 60 | All | 0 |
ORF3a | 255 | V255del | GTT | --- | 57 | 57 | AY.44 | 0.000347 |
ORF3a | 255 | V255del | GTT | --- | 51 | 51 | AY.103 | 0.000317 |
ORF3a | 255 | V255F | Gtt | Ttt | 50 | 50 | AY.43 | 0.000222 |
ORF3a | 255 | V255del | GTT | --- | 49 | 49 | B.1.517 | 0.020922 |
ORF3a | 255 | V255del | GTT | --- | 48 | 48 | AY.46.6 | 0.003466 |
ORF3a | 255 | V255A | gTt | gCt | 46 | 46 | AY.25 | 0.000277 |
ORF3a | 255 | V255V | gtT | gtG | 45 | 45 | B.1.621 | 0.003983 |
ORF3a | 255 | V255G | gTt | gGt | 22 | 44 | AY.113 | 0.003133 |
ORF3a | 255 | V255G | gTT | gGG | 22 | 44 | AY.113 | 0.003133 |
ORF3a | 255 | V255del | GTT | --- | 43 | 43 | AY.120 | 0.001599 |
ORF3a | 255 | V255del1 | gtT | gt- | 31 | 42 | All | 0.000006 |
ORF3a | 255 | V255del1 | Gtt | -tt | 5 | 42 | All | 0.000001 |
ORF3a | 255 | V255del1 | gTt | g-t | 3 | 42 | All | 0.000001 |
ORF3a | 255 | V255del1 | GTt | -Ct | 2 | 42 | All | 0 |
ORF3a | 255 | V255del1 | gTT | g-C | 1 | 42 | All | 0 |
ORF3a | 255 | V255F | Gtt | Ttt | 42 | 42 | B.1.1.372 | 0.028926 |
ORF3a | 255 | V255del | GTT | --- | 38 | 38 | AY.3 | 0.000378 |
ORF3a | 255 | V255F | Gtt | Ttt | 37 | 37 | AY.102 | 0.000981 |
ORF3a | 255 | V255del | GTT | --- | 37 | 37 | AY.26 | 0.001047 |
ORF3a | 255 | V255R | GTT | CGG | 18 | 36 | AY.113 | 0.002563 |
ORF3a | 255 | V255L | GtT | CtG | 18 | 36 | AY.113 | 0.002563 |
ORF3a | 255 | V255R | GTt | CGt | 18 | 36 | AY.113 | 0.002563 |
ORF3a | 255 | V255L | Gtt | Ctt | 18 | 36 | AY.113 | 0.002563 |
ORF3a | 255 | V255F | Gtt | Ttt | 36 | 36 | AY.46.6 | 0.002599 |
ORF3a | 255 | V255del | GTT | --- | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 255 | V255I | Gtt | Att | 35 | 35 | B.1.2 | 0.000308 |
ORF3a | 255 | V255del | GTT | --- | 32 | 32 | B.1.1.375 | 0.380952 |
ORF3a | 255 | V255V | gtT | gtA | 31 | 31 | B.1.470 | 0.043539 |
ORF3a | 255 | V255del | GTT | --- | 30 | 30 | AY.45 | 0.003651 |
ORF3a | 255 | V255F | Gtt | Ttt | 29 | 29 | AY.54 | 0.002765 |
ORF3a | 255 | V255F | Gtt | Ttt | 28 | 28 | AY.44 | 0.00017 |
ORF3a | 255 | V255del | GTT | --- | 28 | 28 | B.1.221 | 0.001989 |
ORF3a | 255 | V255del | GTT | --- | 28 | 28 | B.1.351 | 0.000832 |
ORF3a | 255 | V255F | Gtt | Ttt | 27 | 27 | B.1.2 | 0.000238 |
ORF3a | 255 | V255V | gtT | gtG | 26 | 26 | AY.113 | 0.003702 |
ORF3a | 255 | V255del | GTT | --- | 26 | 26 | B.1.258.17 | 0.002703 |
ORF3a | 255 | V255del | GTT | --- | 25 | 25 | B.1.427 | 0.001262 |
ORF3a | 255 | V255del | GTT | --- | 25 | 25 | B.1.621 | 0.002213 |
ORF3a | 255 | V255A | gTt | gCt | 24 | 24 | AY.44 | 0.000146 |
ORF3a | 255 | V255V | gtT | gtC | 23 | 24 | B.1.1.7 | 0.000021 |
ORF3a | 255 | V255V | gtT | gtG | 1 | 24 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255I | Gtt | Att | 23 | 23 | B.1.1 | 0.000417 |
ORF3a | 255 | V255I | Gtt | Att | 22 | 22 | AY.39 | 0.000544 |
ORF3a | 255 | V255del | GTT | --- | 21 | 21 | B.1.177.60 | 0.004587 |
ORF3a | 255 | V255del2 | gTT | g-- | 20 | 20 | AY.25 | 0.00012 |
ORF3a | 255 | V255del | GTT | --- | 20 | 20 | B.1.258 | 0.001331 |
ORF3a | 255 | V255F | Gtt | Ttt | 20 | 20 | B.1.351 | 0.000595 |
ORF3a | 255 | V255F | Gtt | Ttt | 20 | 20 | B.1.609 | 0.009588 |
ORF3a | 255 | V255del | GTT | --- | 19 | 19 | B.1.1.519 | 0.000755 |
ORF3a | 255 | V255A | gTt | gCt | 19 | 19 | B.1.617.2 | 0.000072 |
ORF3a | 255 | V255del | GTT | --- | 18 | 18 | C.8 | 0.080357 |
ORF3a | 255 | V255del | GTT | --- | 17 | 17 | AY.39 | 0.00042 |
ORF3a | 255 | V255del | GTT | --- | 17 | 17 | B.1.214.2 | 0.010192 |
ORF3a | 255 | V255del | GTT | --- | 17 | 17 | B.1.36.36 | 0.010235 |
ORF3a | 255 | V255I | Gtt | Att | 16 | 16 | B.1.1.7 | 0.000014 |
ORF3a | 255 | V255del | GTT | --- | 16 | 16 | B.1.470 | 0.022472 |
ORF3a | 255 | V255del | GTT | --- | 16 | 16 | B.1.637 | 0.001169 |
ORF3a | 255 | V255del | GTT | --- | 15 | 15 | B.1.177.82 | 0.00716 |
ORF3a | 255 | V255del | GTT | --- | 15 | 15 | B.1.561 | 0.005955 |
ORF3a | 255 | V255V | gtT | gtC | 14 | 14 | B.1.1.204 | 0.042553 |
ORF3a | 255 | V255del | GTT | --- | 14 | 14 | B.1.1.222 | 0.002856 |
ORF3a | 255 | V255del | GTT | --- | 14 | 14 | B.1.525 | 0.001584 |
ORF3a | 255 | V255del | GTT | --- | 13 | 13 | AY.53 | 0.003738 |
ORF3a | 255 | V255del | GTT | --- | 13 | 13 | AY.54 | 0.00124 |
ORF3a | 255 | V255F | Gtt | Ttt | 13 | 13 | B.1 | 0.000119 |
ORF3a | 255 | V255del | GTT | --- | 13 | 13 | B.1.1.38 | 0.764706 |
ORF3a | 255 | V255del | GTT | --- | 13 | 13 | B.1.1.434 | 0.004531 |
ORF3a | 255 | V255F | Gtt | Ttt | 13 | 13 | B.1.36.1 | 0.014823 |
ORF3a | 255 | V255del | GTT | --- | 12 | 12 | AY.29 | 0.000189 |
ORF3a | 255 | V255del | GTT | --- | 12 | 12 | AY.36 | 0.001779 |
ORF3a | 255 | V255del | GTT | --- | 12 | 12 | AY.6 | 0.000494 |
ORF3a | 255 | V255I | Gtt | Att | 12 | 12 | B.1.1.317 | 0.00494 |
ORF3a | 255 | V255F | Gtt | Ttt | 12 | 12 | B.1.258.11 | 0.004756 |
ORF3a | 255 | V255del | GTT | --- | 12 | 12 | B.1.429 | 0.000282 |
ORF3a | 255 | V255del | GTT | --- | 12 | 12 | B.1.526 | 0.000282 |
ORF3a | 255 | V255A | gTt | gCt | 11 | 11 | AY.4 | 0.000017 |
ORF3a | 255 | V255I | Gtt | Att | 10 | 10 | AY.25 | 0.00006 |
ORF3a | 255 | V255del | GTT | --- | 10 | 10 | AY.75 | 0.00056 |
ORF3a | 255 | V255del1 | gtT | gt- | 10 | 10 | B.1.621 | 0.000885 |
ORF3a | 255 | V255V | gtT | gtC | 8 | 9 | AY.4 | 0.000012 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 9 | AY.4 | 0.000002 |
ORF3a | 255 | V255del | GTT | --- | 9 | 9 | AY.5 | 0.000186 |
ORF3a | 255 | V255del | GTT | --- | 9 | 9 | B.1.1.1 | 0.00294 |
ORF3a | 255 | V255del | GTT | --- | 9 | 9 | B.1.36 | 0.001313 |
ORF3a | 255 | V255del | GTT | --- | 9 | 9 | P.2 | 0.00168 |
ORF3a | 255 | V255F | Gtt | Ttt | 8 | 8 | AY.39 | 0.000198 |
ORF3a | 255 | V255del | GTT | --- | 8 | 8 | AY.42 | 0.000322 |
ORF3a | 255 | V255del | GTT | --- | 8 | 8 | B.1.160 | 0.00025 |
ORF3a | 255 | V255del | GTT | --- | 8 | 8 | B.1.177.86 | 0.001468 |
ORF3a | 255 | V255del | GTT | --- | 8 | 8 | B.1.633 | 0.333333 |
ORF3a | 255 | V255D | gTt | gAt | 6 | 7 | All | 0.000001 |
ORF3a | 255 | V255D | gTT | gAC | 1 | 7 | All | 0 |
ORF3a | 255 | V255A | gTt | gCt | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | AY.5 | 0.000145 |
ORF3a | 255 | V255del | GTT | --- | 7 | 7 | B.1.1.159 | 0.03271 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | B.1.177.51 | 0.031963 |
ORF3a | 255 | V255del | GTT | --- | 7 | 7 | B.1.240 | 0.001509 |
ORF3a | 255 | V255F | Gtt | Ttt | 7 | 7 | B.1.526 | 0.000165 |
ORF3a | 255 | V255del | GTT | --- | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 255 | V255V | gtT | gtC | 6 | 7 | B.1.617.2 | 0.000023 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 7 | B.1.617.2 | 0.000004 |
ORF3a | 255 | V255G | gTt | gGt | 7 | 7 | P.1 | 0.00011 |
ORF3a | 255 | V255A | gTt | gCt | 6 | 6 | AY.114 | 0.001387 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | AY.118 | 0.000376 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | AY.13 | 0.000966 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | AY.20 | 0.000233 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | AY.33 | 0.000401 |
ORF3a | 255 | V255I | Gtt | Att | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 255 | V255A | gTt | gCt | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | B.1.1.372 | 0.004132 |
ORF3a | 255 | V255del | GTT | --- | 6 | 6 | B.1.177.84 | 0.04 |
ORF3a | 255 | V255F | Gtt | Ttt | 6 | 6 | B.1.177.84 | 0.04 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | AY.3.1 | 0.000426 |
ORF3a | 255 | V255del1 | gtT | gt- | 5 | 5 | AY.7 | 0.00098 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | B | 0.000639 |
ORF3a | 255 | V255A | gTt | gCt | 5 | 5 | B.1 | 0.000046 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | B.1.1.316 | 0.004625 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | B.1.1.514 | 0.192308 |
ORF3a | 255 | V255F | Gtt | Ttt | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | B.1.237 | 0.024876 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | B.1.543 | 0.05 |
ORF3a | 255 | V255del2 | gTT | g-- | 5 | 5 | B.1.627 | 0.010101 |
ORF3a | 255 | V255del2 | gTT | g-- | 5 | 5 | B.1.628 | 0.001762 |
ORF3a | 255 | V255del | GTT | --- | 5 | 5 | P.1 | 0.000079 |
ORF3a | 255 | V255A | gTt | gCt | 5 | 5 | P.1 | 0.000079 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | 0.222222 | |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | AY.46.4 | 0.000658 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | AY.84 | 0.00175 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 255 | V255V | gtT | gtC | 3 | 4 | B.1 | 0.000027 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 4 | B.1 | 0.000009 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | B.1.1.318 | 0.001207 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | B.1.1.377 | 0.005525 |
ORF3a | 255 | V255del1 | gtT | gt- | 3 | 4 | B.1.1.7 | 0.000003 |
ORF3a | 255 | V255del1 | gTT | g-C | 1 | 4 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255del | GTT | --- | 4 | 4 | B.1.189 | 0.017167 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 255 | V255L | Gtt | Ctt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 255 | V255F | Gtt | Ttt | 4 | 4 | P.1 | 0.000063 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.10 | 0.00159 |
ORF3a | 255 | V255L | Gtt | Ctt | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.16 | 0.001139 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 255 | V255I | Gtt | Att | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | AY.46.3 | 0.002801 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.1.28 | 0.000934 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 255 | V255F | Gtt | Ttt | 3 | 3 | B.1.1.315 | 0.025424 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 255 | V255del2 | GTt | --t | 1 | 3 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255del2 | GTT | --N | 1 | 3 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.1.70 | 0.001023 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.1.74 | 0.012931 |
ORF3a | 255 | V255del2 | GTT | --N | 3 | 3 | B.1.177.21 | 0.000229 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.177.32 | 0.004049 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 255 | V255V | gtT | gtC | 3 | 3 | B.1.582 | 0.001472 |
ORF3a | 255 | V255del2 | gTT | g-- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 255 | V255del1 | gtT | gt- | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 255 | V255del2 | gTT | g-- | 3 | 3 | B.1.631 | 0.010101 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | B.3 | 0.002492 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | C.37 | 0.000348 |
ORF3a | 255 | V255del | GTT | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 255 | V255del1 | GTt | -Ct | 2 | 2 | 0.111111 | |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 255 | V255S | GTt | AGt | 2 | 2 | All | 0 |
ORF3a | 255 | V255I | Gtt | Att | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 2 | AY.103 | 0.000006 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 2 | AY.103 | 0.000006 |
ORF3a | 255 | V255R | GTT | CGG | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255R | GTt | CGt | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255G | gTt | gGt | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255L | GtT | CtG | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255G | gTT | gGG | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255L | Gtt | Ctt | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.2 | 0.000712 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 255 | V255L | Gtt | Ctt | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255G | gTT | gGG | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255L | GtT | CtG | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255R | GTt | CGt | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255R | GTT | CGG | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255G | gTt | gGt | 1 | 2 | AY.26 | 0.000028 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 255 | V255V | gtT | gtC | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 255 | V255V | gtT | gtC | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 255 | V255I | Gtt | Att | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 255 | V255A | gTt | gCt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.1.189 | 0.003026 |
ORF3a | 255 | V255I | Gtt | Att | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.1.344 | 0.021505 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.1.388 | 0.090909 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 255 | V255G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.151 | 0.022222 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.199 | 0.008264 |
ORF3a | 255 | V255A | gTt | gCt | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 255 | V255V | gtT | gtC | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.206 | 0.001631 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.3 | 0.005236 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.346 | 0.002621 |
ORF3a | 255 | V255A | gTt | gCt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.36.31 | 0.003503 |
ORF3a | 255 | V255I | Gtt | Att | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.411 | 0.007407 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.564 | 0.000852 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 255 | V255del2 | gTT | g-- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 255 | V255D | gTt | gAt | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.627 | 0.00404 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | B.1.635 | 0.035088 |
ORF3a | 255 | V255I | Gtt | Att | 2 | 2 | C.16 | 0.002121 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | C.16 | 0.002121 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | C.6 | 0.074074 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | D.2 | 0.00015 |
ORF3a | 255 | V255F | Gtt | Ttt | 2 | 2 | P.2 | 0.000373 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 255 | V255del | GTT | --- | 2 | 2 | R.1 | 0.00018 |
ORF3a | 255 | V255S | GTt | AGt | 1 | 1 | 0.055556 | |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | 0.055556 | |
ORF3a | 255 | V255G | gTt | gGt | 1 | 1 | 0.055556 | |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | A.2 | 0.000662 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 255 | V255W | GTT | TGG | 1 | 1 | All | 0 |
ORF3a | 255 | V255P | GTt | CCt | 1 | 1 | All | 0 |
ORF3a | 255 | V255T | GTt | ACt | 1 | 1 | All | 0 |
ORF3a | 255 | V255Y | GTt | TAt | 1 | 1 | All | 0 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 255 | V255V | gtT | gtG | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 255 | V255L | Gtt | Ctt | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 255 | V255V | gtT | gtG | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 255 | V255D | gTt | gAt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 255 | V255G | gTt | gGt | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 255 | V255D | gTt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1 | 0.000009 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 255 | V255Y | GTt | TAt | 1 | 1 | B.1 | 0.000009 |
ORF3a | 255 | V255D | gTt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF3a | 255 | V255del1 | Gtt | -tt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 255 | V255del1 | gTt | g-t | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.332 | 0.03125 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 255 | V255del2 | GTT | --N | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.402 | 0.011111 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.417 | 0.002703 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 255 | V255del1 | gTt | g-t | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.467 | 0.019231 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.485 | 0.016667 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.1.52 | 0.012195 |
ORF3a | 255 | V255D | gTT | gAC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255P | GTt | CCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.104 | 0.00369 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.110 | 0.004525 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 255 | V255V | gtT | gtG | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.53 | 0.002392 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 255 | V255S | GTt | AGt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 255 | V255del1 | gTt | g-t | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 255 | V255D | gTt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 255 | V255L | Gtt | Ctt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.214.1 | 0.02 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.243.2 | 0.014493 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.264 | 0.012346 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.337 | 0.005587 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 255 | V255del1 | Gtt | -tt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.36.26 | 0.002857 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.381 | 0.007812 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 255 | V255L | Gtt | Ctt | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 255 | V255W | GTT | TGG | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 255 | V255G | gTt | gGt | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.507 | 0.011236 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.605 | 0.005952 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.616 | 0.02439 |
ORF3a | 255 | V255V | gtT | gtC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.629 | 0.013333 |
ORF3a | 255 | V255del1 | gtT | gt- | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.81 | 0.021277 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.88.1 | 0.004808 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | C.1.1 | 0.076923 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | C.14 | 0.004329 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | C.18 | 0.002591 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | C.35 | 0.000774 |
ORF3a | 255 | V255T | GTt | ACt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 255 | V255V | gtT | gtA | 1 | 1 | D.2 | 0.000075 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | N.5 | 0.001767 |
ORF3a | 255 | V255del1 | Gtt | -tt | 1 | 1 | P.1 | 0.000016 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
ORF3a | 255 | V255F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 255 | V255del1 | Gtt | -tt | 1 | 1 | P.2 | 0.000187 |
ORF3a | 255 | V255I | Gtt | Att | 1 | 1 | P.2 | 0.000187 |
ORF3a | 255 | V255del1 | Gtt | -tt | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 255 | V255del2 | gTT | g-- | 1 | 1 | R.1 | 0.00009 |
ORF3a | 255 | V255del | GTT | --- | 1 | 1 | W.3 | 0.005263 |
ORF3a | 255 | V255A | gTt | gCt | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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