CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 254 | G254R | nonsyn | Gga | Aga | 1961 | 1768 | 0.901581 | 26152-26154 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 254 | G254R | Gga | Aga | 1768 | 1961 | All | 0.000338 |
ORF3a | 254 | G254R | Gga | Aga | 369 | 369 | P.1.17 | 0.059689 |
ORF3a | 254 | G254R | Gga | Aga | 334 | 334 | AY.38 | 0.16675 |
ORF3a | 254 | G254R | Gga | Aga | 118 | 198 | AY.4 | 0.000184 |
ORF3a | 254 | G254R | Gga | Aga | 154 | 154 | B.1.160 | 0.004803 |
ORF3a | 254 | G254R | Gga | Aga | 140 | 140 | B.1.582 | 0.068695 |
ORF3a | 254 | G254R | Gga | Aga | 115 | 121 | B.1.1.7 | 0.000103 |
ORF3a | 254 | G254R | Gga | Aga | 78 | 78 | AY.43 | 0.000346 |
ORF3a | 254 | G254R | Gga | Aga | 56 | 56 | B.1.177.86 | 0.010273 |
ORF3a | 254 | G254R | Gga | Aga | 24 | 29 | B.1.617.2 | 0.00009 |
ORF3a | 254 | G254R | Gga | Aga | 19 | 26 | AY.44 | 0.000116 |
ORF3a | 254 | G254R | Gga | Aga | 15 | 23 | AY.103 | 0.000093 |
ORF3a | 254 | G254R | Gga | Aga | 22 | 23 | B.1.1 | 0.000399 |
ORF3a | 254 | G254R | Gga | Aga | 17 | 19 | B.1 | 0.000156 |
ORF3a | 254 | G254R | Gga | Aga | 17 | 18 | B.1.526 | 0.0004 |
ORF3a | 254 | G254R | Gga | Aga | 7 | 14 | B.1.2 | 0.000062 |
ORF3a | 254 | G254R | Gga | Aga | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 254 | G254R | Gga | Aga | 12 | 12 | A.1 | 0.003382 |
ORF3a | 254 | G254R | Gga | Aga | 8 | 8 | AP.1 | 0.012012 |
ORF3a | 254 | G254R | Gga | Aga | 8 | 8 | AY.20 | 0.000311 |
ORF3a | 254 | G254R | Gga | Aga | 8 | 8 | B.1.637 | 0.000585 |
ORF3a | 254 | G254R | Gga | Aga | 8 | 8 | B.6.6 | 0.007111 |
ORF3a | 254 | G254R | Gga | Aga | 7 | 8 | P.1 | 0.00011 |
ORF3a | 254 | G254R | Gga | Aga | 7 | 7 | AY.100 | 0.000322 |
ORF3a | 254 | G254R | Gga | Aga | 6 | 7 | AY.14 | 0.000528 |
ORF3a | 254 | G254R | Gga | Aga | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 7 | B.1.1.519 | 0.000119 |
ORF3a | 254 | G254R | Gga | Aga | 7 | 7 | B.1.177.87 | 0.005095 |
ORF3a | 254 | G254R | Gga | Aga | 6 | 6 | A | 0.002322 |
ORF3a | 254 | G254R | Gga | Aga | 6 | 6 | B.1.1.144 | 0.171429 |
ORF3a | 254 | G254R | Gga | Aga | 6 | 6 | B.1.1.294 | 0.007595 |
ORF3a | 254 | G254R | Gga | Aga | 6 | 6 | B.1.1.33 | 0.002525 |
ORF3a | 254 | G254R | Gga | Aga | 5 | 5 | B.1.1.284 | 0.000537 |
ORF3a | 254 | G254R | Gga | Aga | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 254 | G254R | Gga | Aga | 5 | 5 | B.1.39 | 0.019531 |
ORF3a | 254 | G254R | Gga | Aga | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 254 | G254R | Gga | Aga | 5 | 5 | P.1.14 | 0.000239 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | AY.22 | 0.008368 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 4 | AY.26 | 0.000085 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 4 | AY.5 | 0.000041 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | B.1.1.216 | 0.003562 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | B.1.1.243 | 0.016327 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | B.1.36.19 | 0.037037 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | B.1.456 | 0.013072 |
ORF3a | 254 | G254R | Gga | Aga | 4 | 4 | B.1.623 | 0.002146 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | AY.107 | 0.001398 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | B.1.1.277 | 0.002276 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | B.1.1.28 | 0.000934 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | B.1.177.81 | 0.000568 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | C.1 | 0.007177 |
ORF3a | 254 | G254R | Gga | Aga | 3 | 3 | C.37 | 0.000348 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 2 | AY.118 | 0.000063 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | B.1.1.418 | 0.045455 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 2 | B.1.351 | 0.00003 |
ORF3a | 254 | G254R | Gga | Aga | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 2 | Q.8 | 0.000165 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | A.21 | 0.00277 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | A.5 | 0.001923 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.133 | 0.008475 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.1.411 | 0.014706 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.177.36 | 0.016129 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.360 | 0.012658 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.612 | 0.002653 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | B.40 | 0.000364 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | C.14 | 0.004329 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | K.2 | 0.04 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 254 | G254R | Gga | Aga | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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