CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 249

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a249I249LnonsynAtcCtc12411241126137-26139
ORF3a249I249IsynatCatT108010720.99259326137-26139
ORF3a249I249IsynatCatA108080.0074074126137-26139
ORF3a249I249TnonsynaTcaCc6464126137-26139
ORF3a249I249deldelATC---2727126137-26139
ORF3a249I249VnonsynAtcGtc640.66666726137-26139
ORF3a249I249VnonsynAtCGtA620.33333326137-26139
ORF3a249I249del2delATc--c320.66666726137-26139
ORF3a249I249KnonsynaTCaAA320.66666726137-26139
ORF3a249I249del2delATCG--310.33333326137-26139
ORF3a249I249KnonsynaTCaAG310.33333326137-26139
ORF3a249I249SnonsynaTcaGc22126137-26139
ORF3a249I249NnonsynaTcaAc22126137-26139
ORF3a249I249EnonsynATCGAA22126137-26139
ORF3a249I249FnonsynAtcTtc22126137-26139
ORF3a249I249MnonsynatCatG11126137-26139

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a249I249LAtcCtc12411241All0.000237
ORF3a249I249IatCatT10721080All0.000205
ORF3a249I249IatCatA81080All0.000002
ORF3a249I249LAtcCtc918918AY.40.001429
ORF3a249I249IatCatT263263B.1.5230.644608
ORF3a249I249IatCatT130132B.1.1.70.000116
ORF3a249I249IatCatA2132B.1.1.70.000002
ORF3a249I249IatCatT8181AY.1030.000503
ORF3a249I249IatCatT6666AY.1210.008931
ORF3a249I249TaTcaCc6464All0.000012
ORF3a249I249LAtcCtc6363B.1.617.20.000237
ORF3a249I249IatCatT5556AY.40.000086
ORF3a249I249IatCatA156AY.40.000002
ORF3a249I249IatCatT4848B.1.617.20.000181
ORF3a249I249LAtcCtc4545AY.50.000929
ORF3a249I249IatCatT4444AY.540.004195
ORF3a249I249IatCatT4141AY.440.00025
ORF3a249I249IatCatT3838P.10.000599
ORF3a249I249delATC---2727All0.000005
ORF3a249I249LAtcCtc2626AY.60.001069
ORF3a249I249IatCatT2324B.1.20.000203
ORF3a249I249IatCatA124B.1.20.000009
ORF3a249I249LAtcCtc2323AY.90.001555
ORF3a249I249IatCatT2222P.1.10.006989
ORF3a249I249IatCatT2121AY.30.000209
ORF3a249I249LAtcCtc2020AY.4.20.000434
ORF3a249I249LAtcCtc1717AY.1200.000632
ORF3a249I249IatCatT1717AY.430.000075
ORF3a249I249LAtcCtc1717AY.430.000075
ORF3a249I249TaTcaCc1717AY.440.000103
ORF3a249I249LAtcCtc1616AY.980.001264
ORF3a249I249LAtcCtc1515B.1.1.70.000013
ORF3a249I249IatCatT1112B.10.000101
ORF3a249I249IatCatA112B.10.000009
ORF3a249I249IatCatT1212B.1.10.000218
ORF3a249I249IatCatT1111AY.250.000066
ORF3a249I249IatCatT1111AY.4.20.000239
ORF3a249I249IatCatT1111B.1.1.2940.013924
ORF3a249I249LAtcCtc1010AY.1110.001832
ORF3a249I249TaTcaCc1010AY.40.000016
ORF3a249I249LAtcCtc99AY.70.001764
ORF3a249I249LAtcCtc99B.1.5250.001018
ORF3a249I249IatCatT77AY.290.00011
ORF3a249I249LAtcCtc77AY.4.50.000752
ORF3a249I249TaTcaCc77B.1.1.70.000006
ORF3a249I249delATC---77B.1.1.70.000006
ORF3a249I249IatCatT77P.1.140.000335
ORF3a249I249VAtcGtc46All0.000001
ORF3a249I249VAtCGtA26All0
ORF3a249I249IatCatT66AY.880.005305
ORF3a249I249IatCatT66AY.9.20.00022
ORF3a249I249IatCatT66B.1.2580.000399
ORF3a249I249IatCatT55B.1.5260.000118
ORF3a249I249IatCatT55D.20.000375
ORF3a249I249IatCatT44AU.30.008439
ORF3a249I249IatCatT44AY.1020.000106
ORF3a249I249IatCatT44AY.260.000113
ORF3a249I249LAtcCtc44AY.4.10.00295
ORF3a249I249LAtcCtc44AY.900.002738
ORF3a249I249IatCatT44B.1.1.1610.014134
ORF3a249I249TaTcaCc44B.1.20.000035
ORF3a249I249IatCatT44B.1.2340.000528
ORF3a249I249delATC---44B.1.5250.000453
ORF3a249I249del2ATc--c23All0
ORF3a249I249KaTCaAA23All0
ORF3a249I249del2ATCG--13All0
ORF3a249I249KaTCaAG13All0
ORF3a249I249IatCatT33AY.1000.000138
ORF3a249I249TaTcaCc33AY.1030.000019
ORF3a249I249IatCatT33AY.340.000291
ORF3a249I249TaTcaCc33AY.390.000074
ORF3a249I249LAtcCtc33AY.440.000018
ORF3a249I249IatCatT33AY.450.000365
ORF3a249I249LAtcCtc33AY.46.50.000595
ORF3a249I249IatCatT33AY.470.000093
ORF3a249I249IatCatT33AY.50.000062
ORF3a249I249LAtcCtc33AY.580.002722
ORF3a249I249LAtcCtc33AY.610.000314
ORF3a249I249IatCatT33B.1.1.3170.001235
ORF3a249I249IatCatT33B.1.177.160.001993
ORF3a249I249IatCatT33B.1.177.640.272727
ORF3a249I249IatCatT33B.1.2360.00616
ORF3a249I249IatCatT33B.1.3510.000089
ORF3a249I249IatCatT33B.1.6210.000266
ORF3a249I249IatCatT33P.1.150.000697
ORF3a249I249IatCatA220.111111
ORF3a249I249EATCGAA220.111111
ORF3a249I249TaTcaCc220.111111
ORF3a249I249delATC---220.111111
ORF3a249I249KaTCaAA220.111111
ORF3a249I249VAtCGtA220.111111
ORF3a249I249IatCatT22A0.000774
ORF3a249I249FAtcTtc22All0
ORF3a249I249EATCGAA22All0
ORF3a249I249SaTcaGc22All0
ORF3a249I249NaTcaAc22All0
ORF3a249I249LAtcCtc22AY.100.00106
ORF3a249I249IatCatT22AY.1080.002205
ORF3a249I249IatCatT22AY.1180.000125
ORF3a249I249IatCatT22AY.1200.000074
ORF3a249I249IatCatT22AY.230.000139
ORF3a249I249IatCatT22AY.390.000049
ORF3a249I249IatCatT22AY.39.10.000079
ORF3a249I249LAtcCtc22AY.4.2.10.000298
ORF3a249I249delATC---22AY.430.000009
ORF3a249I249IatCatT22AY.60.000082
ORF3a249I249IatCatT22AY.750.000112
ORF3a249I249LAtcCtc22AY.80.001212
ORF3a249I249LAtcCtc22AY.9.20.000073
ORF3a249I249IatCatT22B0.000256
ORF3a249I249LAtcCtc22B.10.000018
ORF3a249I249IatCatT22B.1.1180.013423
ORF3a249I249IatCatT22B.1.2430.000139
ORF3a249I249IatCatT22B.1.360.000292
ORF3a249I249IatCatT22B.1.595.10.011696
ORF3a249I249IatCatT22B.1.6090.000959
ORF3a249I249IatCatT22B.1.6370.000146
ORF3a249I249IatCatT11A.2.50.000499
ORF3a249I249MatCatG11All0
ORF3a249I249TaTcaCc11AY.10.000396
ORF3a249I249LAtcCtc11AY.1000.000046
ORF3a249I249FAtcTtc11AY.1000.000046
ORF3a249I249TaTcaCc11AY.1020.000027
ORF3a249I249LAtcCtc11AY.1020.000027
ORF3a249I249delATC---11AY.1030.000006
ORF3a249I249TaTcaCc11AY.1170.000085
ORF3a249I249TaTcaCc11AY.160.00038
ORF3a249I249LAtcCtc11AY.170.008197
ORF3a249I249IatCatT11AY.200.000039
ORF3a249I249TaTcaCc11AY.290.000016
ORF3a249I249IatCatT11AY.29.10.000221
ORF3a249I249delATC---11AY.30.00001
ORF3a249I249LAtcCtc11AY.30.00001
ORF3a249I249TaTcaCc11AY.300.000396
ORF3a249I249TaTcaCc11AY.320.000532
ORF3a249I249LAtcCtc11AY.350.000233
ORF3a249I249IatCatT11AY.400.000964
ORF3a249I249LAtcCtc11AY.420.00004
ORF3a249I249IatCatT11AY.420.00004
ORF3a249I249LAtcCtc11AY.450.000122
ORF3a249I249LAtcCtc11AY.46.60.000072
ORF3a249I249TaTcaCc11AY.50.000021
ORF3a249I249LAtcCtc11AY.5.40.000277
ORF3a249I249delATC---11AY.670.000464
ORF3a249I249delATC---11AY.680.000274
ORF3a249I249LAtcCtc11AY.690.000187
ORF3a249I249IatCatT11AY.7.10.000113
ORF3a249I249IatCatT11AY.700.000209
ORF3a249I249IatCatT11AY.740.000116
ORF3a249I249delATC---11AY.750.000056
ORF3a249I249IatCatT11AY.920.000287
ORF3a249I249IatCatT11AY.980.000079
ORF3a249I249del2ATCG--11AY.980.000079
ORF3a249I249delATC---11AY.98.10.000048
ORF3a249I249IatCatT11AY.990.001049
ORF3a249I249IatCatA11AY.99.20.000092
ORF3a249I249TaTcaCc11B0.000128
ORF3a249I249TaTcaCc11B.10.000009
ORF3a249I249IatCatT11B.1.1.1980.001468
ORF3a249I249KaTCaAG11B.1.1.280.000311
ORF3a249I249IatCatT11B.1.1.3220.008772
ORF3a249I249IatCatT11B.1.1.3740.002375
ORF3a249I249LAtcCtc11B.1.1.440.00241
ORF3a249I249IatCatT11B.1.1.4530.008475
ORF3a249I249IatCatT11B.1.1.500.000679
ORF3a249I249IatCatT11B.1.1.5190.00004
ORF3a249I249IatCatT11B.1.1.540.003021
ORF3a249I249SaTcaGc11B.1.1.70.000001
ORF3a249I249VAtcGtc11B.1.1.70.000001
ORF3a249I249FAtcTtc11B.1.1.70.000001
ORF3a249I249TaTcaCc11B.1.1600.000031
ORF3a249I249IatCatT11B.1.1600.000031
ORF3a249I249delATC---11B.1.1770.000013
ORF3a249I249IatCatT11B.1.1770.000013
ORF3a249I249LAtcCtc11B.1.1770.000013
ORF3a249I249IatCatT11B.1.177.120.000152
ORF3a249I249IatCatT11B.1.177.70.000165
ORF3a249I249delATC---11B.1.177.730.000566
ORF3a249I249delATC---11B.1.20.000009
ORF3a249I249LAtcCtc11B.1.2580.000067
ORF3a249I249LAtcCtc11B.1.258.60.019608
ORF3a249I249IatCatT11B.1.3110.000275
ORF3a249I249IatCatT11B.1.3200.001245
ORF3a249I249IatCatT11B.1.36.100.004785
ORF3a249I249IatCatT11B.1.36.170.000494
ORF3a249I249TaTcaCc11B.1.3690.000285
ORF3a249I249TaTcaCc11B.1.3770.004566
ORF3a249I249LAtcCtc11B.1.3960.000706
ORF3a249I249VAtcGtc11B.1.4160.001269
ORF3a249I249IatCatT11B.1.4270.00005
ORF3a249I249NaTcaAc11B.1.4270.00005
ORF3a249I249VAtcGtc11B.1.4290.000024
ORF3a249I249TaTcaCc11B.1.4290.000024
ORF3a249I249IatCatT11B.1.4590.004082
ORF3a249I249IatCatT11B.1.4890.043478
ORF3a249I249NaTcaAc11B.1.4970.000315
ORF3a249I249del2ATc--c11B.1.4970.000315
ORF3a249I249TaTcaCc11B.1.5260.000024
ORF3a249I249VAtcGtc11B.1.5260.000024
ORF3a249I249IatCatT11B.1.5580.004566
ORF3a249I249MatCatG11B.1.5950.000261
ORF3a249I249IatCatT11B.1.5960.000087
ORF3a249I249del2ATc--c11B.1.5960.000087
ORF3a249I249TaTcaCc11B.1.6010.030303
ORF3a249I249IatCatT11B.1.617.10.000129
ORF3a249I249TaTcaCc11B.1.617.20.000004
ORF3a249I249delATC---11B.1.617.20.000004
ORF3a249I249IatCatT11B.1.621.10.000506
ORF3a249I249LAtcCtc11B.1.6360.006711
ORF3a249I249IatCatT11C.37.10.002618
ORF3a249I249TaTcaCc11P.10.000016
ORF3a249I249SaTcaGc11P.10.000016
ORF3a249I249IatCatT11P.1.120.000484
ORF3a249I249IatCatT11Q.40.000455
ORF3a249I249delATC---11Q.80.000165
ORF3a249I249IatCatT11Q.80.000165
ORF3a249I249delATC---11R.10.00009