CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 241 | E241D | nonsyn | gaA | gaC | 996 | 944 | 0.947791 | 26113-26115 | |
ORF3a | 241 | E241D | nonsyn | gaA | gaT | 996 | 52 | 0.0522088 | 26113-26115 | |
ORF3a | 241 | E241X | nonsyn | Gaa | Taa | 591 | 591 | 1 | 26113-26115 | |
ORF3a | 241 | E241K | nonsyn | Gaa | Aaa | 187 | 187 | 1 | 26113-26115 | |
ORF3a | 241 | E241E | syn | gaA | gaG | 167 | 167 | 1 | 26113-26115 | |
ORF3a | 241 | E241G | nonsyn | gAa | gGa | 141 | 139 | 0.985816 | 26113-26115 | |
ORF3a | 241 | E241G | nonsyn | gAA | gGG | 141 | 2 | 0.0141844 | 26113-26115 | |
ORF3a | 241 | E241V | nonsyn | gAa | gTa | 89 | 86 | 0.966292 | 26113-26115 | |
ORF3a | 241 | E241V | nonsyn | gAA | gTT | 89 | 2 | 0.0224719 | 26113-26115 | |
ORF3a | 241 | E241V | nonsyn | gAA | gTG | 89 | 1 | 0.011236 | 26113-26115 | |
ORF3a | 241 | E241Q | nonsyn | Gaa | Caa | 86 | 86 | 1 | 26113-26115 | |
ORF3a | 241 | E241del | del | GAA | --- | 45 | 45 | 1 | 26113-26115 | |
ORF3a | 241 | E241A | nonsyn | gAa | gCa | 34 | 32 | 0.941176 | 26113-26115 | |
ORF3a | 241 | E241A | nonsyn | gAA | gCG | 34 | 1 | 0.0294118 | 26113-26115 | |
ORF3a | 241 | E241A | nonsyn | gAA | gCC | 34 | 1 | 0.0294118 | 26113-26115 | |
ORF3a | 241 | E241del1 | del | Gaa | -aa | 4 | 3 | 0.75 | 26113-26115 | |
ORF3a | 241 | E241del1 | del | gAa | g-a | 4 | 1 | 0.25 | 26113-26115 | |
ORF3a | 241 | E241R | nonsyn | GAA | CGG | 1 | 1 | 1 | 26113-26115 | |
ORF3a | 241 | E241N | nonsyn | GaA | AaC | 1 | 1 | 1 | 26113-26115 | |
ORF3a | 241 | E241L | nonsyn | GAa | CTa | 1 | 1 | 1 | 26113-26115 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 241 | E241D | gaA | gaC | 944 | 996 | All | 0.000181 |
ORF3a | 241 | E241D | gaA | gaT | 52 | 996 | All | 0.00001 |
ORF3a | 241 | E241D | gaA | gaC | 654 | 666 | B.1.1.7 | 0.000585 |
ORF3a | 241 | E241D | gaA | gaT | 12 | 666 | B.1.1.7 | 0.000011 |
ORF3a | 241 | E241X | Gaa | Taa | 591 | 591 | All | 0.000113 |
ORF3a | 241 | E241X | Gaa | Taa | 189 | 189 | AY.4 | 0.000294 |
ORF3a | 241 | E241K | Gaa | Aaa | 187 | 187 | All | 0.000036 |
ORF3a | 241 | E241E | gaA | gaG | 167 | 167 | All | 0.000032 |
ORF3a | 241 | E241G | gAa | gGa | 139 | 141 | All | 0.000027 |
ORF3a | 241 | E241G | gAA | gGG | 2 | 141 | All | 0 |
ORF3a | 241 | E241V | gAa | gTa | 86 | 89 | All | 0.000016 |
ORF3a | 241 | E241V | gAA | gTT | 2 | 89 | All | 0 |
ORF3a | 241 | E241V | gAA | gTG | 1 | 89 | All | 0 |
ORF3a | 241 | E241Q | Gaa | Caa | 86 | 86 | All | 0.000016 |
ORF3a | 241 | E241X | Gaa | Taa | 77 | 77 | B.1.1.7 | 0.000069 |
ORF3a | 241 | E241K | Gaa | Aaa | 73 | 73 | B.1.160 | 0.002277 |
ORF3a | 241 | E241E | gaA | gaG | 49 | 49 | AY.4 | 0.000076 |
ORF3a | 241 | E241D | gaA | gaC | 49 | 49 | B.1.1.222 | 0.009996 |
ORF3a | 241 | E241del | GAA | --- | 45 | 45 | All | 0.000009 |
ORF3a | 241 | E241G | gAa | gGa | 40 | 40 | B.1.1.7 | 0.000036 |
ORF3a | 241 | E241X | Gaa | Taa | 36 | 36 | AY.43 | 0.000159 |
ORF3a | 241 | E241A | gAa | gCa | 32 | 34 | All | 0.000006 |
ORF3a | 241 | E241A | gAA | gCC | 1 | 34 | All | 0 |
ORF3a | 241 | E241A | gAA | gCG | 1 | 34 | All | 0 |
ORF3a | 241 | E241D | gaA | gaC | 26 | 33 | B.1.617.2 | 0.000098 |
ORF3a | 241 | E241D | gaA | gaT | 7 | 33 | B.1.617.2 | 0.000026 |
ORF3a | 241 | E241Q | Gaa | Caa | 32 | 32 | AY.4 | 0.00005 |
ORF3a | 241 | E241X | Gaa | Taa | 30 | 30 | AY.103 | 0.000186 |
ORF3a | 241 | E241E | gaA | gaG | 28 | 28 | AY.44 | 0.00017 |
ORF3a | 241 | E241D | gaA | gaC | 21 | 28 | AY.44 | 0.000128 |
ORF3a | 241 | E241D | gaA | gaT | 7 | 28 | AY.44 | 0.000043 |
ORF3a | 241 | E241E | gaA | gaG | 27 | 27 | AY.3 | 0.000269 |
ORF3a | 241 | E241V | gAa | gTa | 27 | 27 | AY.4 | 0.000042 |
ORF3a | 241 | E241X | Gaa | Taa | 23 | 23 | AY.3 | 0.000229 |
ORF3a | 241 | E241D | gaA | gaC | 23 | 23 | B.1.596.1 | 0.214953 |
ORF3a | 241 | E241X | Gaa | Taa | 23 | 23 | B.1.617.2 | 0.000087 |
ORF3a | 241 | E241D | gaA | gaC | 21 | 21 | AY.43 | 0.000093 |
ORF3a | 241 | E241X | Gaa | Taa | 21 | 21 | AY.44 | 0.000128 |
ORF3a | 241 | E241D | gaA | gaC | 18 | 21 | B.1 | 0.000165 |
ORF3a | 241 | E241D | gaA | gaT | 3 | 21 | B.1 | 0.000027 |
ORF3a | 241 | E241V | gAa | gTa | 19 | 19 | B.1.1.7 | 0.000017 |
ORF3a | 241 | E241K | Gaa | Aaa | 17 | 17 | AY.4 | 0.000026 |
ORF3a | 241 | E241D | gaA | gaC | 17 | 17 | B.1.36.29 | 0.008795 |
ORF3a | 241 | E241K | Gaa | Aaa | 15 | 15 | B.1.1.7 | 0.000013 |
ORF3a | 241 | E241E | gaA | gaG | 15 | 15 | B.1.617.2 | 0.000056 |
ORF3a | 241 | E241Q | Gaa | Caa | 14 | 14 | B.1.1.514 | 0.538462 |
ORF3a | 241 | E241D | gaA | gaC | 13 | 13 | AY.14 | 0.001144 |
ORF3a | 241 | E241E | gaA | gaG | 13 | 13 | AY.9 | 0.000879 |
ORF3a | 241 | E241K | Gaa | Aaa | 13 | 13 | B.1.1 | 0.000236 |
ORF3a | 241 | E241G | gAa | gGa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF3a | 241 | E241X | Gaa | Taa | 11 | 11 | B.1.526 | 0.000259 |
ORF3a | 241 | E241D | gaA | gaC | 6 | 10 | P.1 | 0.000095 |
ORF3a | 241 | E241D | gaA | gaT | 4 | 10 | P.1 | 0.000063 |
ORF3a | 241 | E241D | gaA | gaC | 10 | 10 | Q.8 | 0.001649 |
ORF3a | 241 | E241V | gAa | gTa | 9 | 9 | AY.103 | 0.000056 |
ORF3a | 241 | E241D | gaA | gaC | 9 | 9 | AY.3 | 0.00009 |
ORF3a | 241 | E241D | gaA | gaC | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 241 | E241X | Gaa | Taa | 9 | 9 | B.1.525 | 0.001018 |
ORF3a | 241 | E241K | Gaa | Aaa | 9 | 9 | B.1.617.2 | 0.000034 |
ORF3a | 241 | E241D | gaA | gaC | 7 | 8 | AY.103 | 0.000043 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 8 | AY.103 | 0.000006 |
ORF3a | 241 | E241G | gAa | gGa | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 241 | E241X | Gaa | Taa | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 241 | E241del | GAA | --- | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 241 | E241G | gAa | gGa | 8 | 8 | AY.99.2 | 0.000737 |
ORF3a | 241 | E241G | gAa | gGa | 7 | 8 | B.1.1 | 0.000127 |
ORF3a | 241 | E241G | gAA | gGG | 1 | 8 | B.1.1 | 0.000018 |
ORF3a | 241 | E241D | gaA | gaC | 8 | 8 | B.1.2 | 0.00007 |
ORF3a | 241 | E241Q | Gaa | Caa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 241 | E241V | gAa | gTa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 241 | E241G | gAa | gGa | 7 | 7 | Y.1 | 0.089744 |
ORF3a | 241 | E241D | gaA | gaC | 6 | 6 | AY.25 | 0.000036 |
ORF3a | 241 | E241X | Gaa | Taa | 6 | 6 | AY.25 | 0.000036 |
ORF3a | 241 | E241D | gaA | gaC | 4 | 6 | AY.4 | 0.000006 |
ORF3a | 241 | E241D | gaA | gaT | 2 | 6 | AY.4 | 0.000003 |
ORF3a | 241 | E241X | Gaa | Taa | 6 | 6 | AY.4.2 | 0.00013 |
ORF3a | 241 | E241K | Gaa | Aaa | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 241 | E241G | gAa | gGa | 6 | 6 | AY.5 | 0.000124 |
ORF3a | 241 | E241D | gaA | gaT | 6 | 6 | AY.98 | 0.000474 |
ORF3a | 241 | E241X | Gaa | Taa | 6 | 6 | B.1 | 0.000055 |
ORF3a | 241 | E241G | gAa | gGa | 6 | 6 | B.1 | 0.000055 |
ORF3a | 241 | E241E | gaA | gaG | 6 | 6 | B.1.1.7 | 0.000005 |
ORF3a | 241 | E241E | gaA | gaG | 6 | 6 | B.1.409 | 0.004687 |
ORF3a | 241 | E241A | gAa | gCa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 241 | E241K | Gaa | Aaa | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 241 | E241X | Gaa | Taa | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 241 | E241E | gaA | gaG | 5 | 5 | B.1.1.1 | 0.001633 |
ORF3a | 241 | E241A | gAa | gCa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 241 | E241X | Gaa | Taa | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 241 | E241X | Gaa | Taa | 5 | 5 | B.1.234 | 0.00066 |
ORF3a | 241 | E241X | Gaa | Taa | 5 | 5 | B.1.580 | 0.020325 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | 0.222222 | |
ORF3a | 241 | E241del1 | Gaa | -aa | 3 | 4 | All | 0.000001 |
ORF3a | 241 | E241del1 | gAa | g-a | 1 | 4 | All | 0 |
ORF3a | 241 | E241K | Gaa | Aaa | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 241 | E241K | Gaa | Aaa | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 241 | E241D | gaA | gaT | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | AY.51 | 0.003636 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | AY.71 | 0.0019 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 241 | E241V | gAa | gTa | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | B.1.36 | 0.000584 |
ORF3a | 241 | E241K | Gaa | Aaa | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 241 | E241del | GAA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | B.1.590 | 0.018182 |
ORF3a | 241 | E241X | Gaa | Taa | 4 | 4 | C.35 | 0.003096 |
ORF3a | 241 | E241G | gAa | gGa | 3 | 3 | AY.104 | 0.005952 |
ORF3a | 241 | E241K | Gaa | Aaa | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 241 | E241E | gaA | gaG | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 241 | E241A | gAa | gCa | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 241 | E241A | gAa | gCa | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 241 | E241A | gAa | gCa | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 241 | E241Q | Gaa | Caa | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 241 | E241G | gAa | gGa | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 241 | E241V | gAA | gTT | 2 | 3 | AY.5 | 0.000041 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 3 | AY.5 | 0.000021 |
ORF3a | 241 | E241D | gaA | gaC | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 241 | E241G | gAa | gGa | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 241 | E241A | gAa | gCa | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 241 | E241Q | Gaa | Caa | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 241 | E241D | gaA | gaC | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 241 | E241Q | Gaa | Caa | 3 | 3 | B.1.396 | 0.002117 |
ORF3a | 241 | E241X | Gaa | Taa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 3 | B.1.621 | 0.000177 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 3 | B.1.621 | 0.000089 |
ORF3a | 241 | E241Q | Gaa | Caa | 3 | 3 | P.1 | 0.000047 |
ORF3a | 241 | E241K | Gaa | Aaa | 2 | 2 | 0.111111 | |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 241 | E241A | gAa | gCa | 2 | 2 | A.5 | 0.003846 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 241 | E241Q | Gaa | Caa | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 2 | AY.114 | 0.000462 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 241 | E241A | gAa | gCa | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 241 | E241Q | Gaa | Caa | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 241 | E241del | GAA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 2 | AY.41 | 0.000588 |
ORF3a | 241 | E241V | gAa | gTa | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 241 | E241Q | Gaa | Caa | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | AY.89 | 0.009804 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 241 | E241Q | Gaa | Caa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 241 | E241V | gAa | gTa | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 241 | E241E | gaA | gaG | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 241 | E241K | Gaa | Aaa | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 241 | E241del | GAA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 2 | B.1.235 | 0.005038 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.239 | 0.002442 |
ORF3a | 241 | E241K | Gaa | Aaa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 2 | B.1.351 | 0.00003 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 2 | B.1.351 | 0.00003 |
ORF3a | 241 | E241Q | Gaa | Caa | 2 | 2 | B.1.36.19 | 0.018519 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 241 | E241V | gAa | gTa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 241 | E241V | gAa | gTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 241 | E241G | gAa | gGa | 2 | 2 | B.1.565 | 0.001621 |
ORF3a | 241 | E241del1 | Gaa | -aa | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 241 | E241K | Gaa | Aaa | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | C.37 | 0.000232 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 2 | D.2 | 0.000075 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 2 | D.2 | 0.000075 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | P.1 | 0.000032 |
ORF3a | 241 | E241D | gaA | gaC | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 241 | E241X | Gaa | Taa | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | A.27 | 0.001656 |
ORF3a | 241 | E241N | GaA | AaC | 1 | 1 | All | 0 |
ORF3a | 241 | E241R | GAA | CGG | 1 | 1 | All | 0 |
ORF3a | 241 | E241L | GAa | CTa | 1 | 1 | All | 0 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 241 | E241A | gAA | gCC | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 241 | E241N | GaA | AaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 241 | E241R | GAA | CGG | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 241 | E241G | gAA | gGG | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 241 | E241A | gAa | gCa | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 241 | E241del1 | Gaa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 241 | E241del1 | gAa | g-a | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 241 | E241A | gAA | gCG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.165 | 0.015385 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | B.1.1.201 | 0.02439 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 241 | E241L | GAa | CTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.334 | 0.016393 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.1.458 | 0.041667 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.160.26 | 0.002421 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.160.28 | 0.002924 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.160.30 | 0.002976 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 241 | E241A | gAa | gCa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.343 | 0.020833 |
ORF3a | 241 | E241A | gAa | gCa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.520 | 0.021739 |
ORF3a | 241 | E241Q | Gaa | Caa | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 241 | E241D | gaA | gaT | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 241 | E241V | gAa | gTa | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 241 | E241E | gaA | gaG | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | C.1 | 0.002392 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | C.3 | 0.007634 |
ORF3a | 241 | E241D | gaA | gaC | 1 | 1 | C.35 | 0.000774 |
ORF3a | 241 | E241K | Gaa | Aaa | 1 | 1 | C.37 | 0.000116 |
ORF3a | 241 | E241G | gAa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 241 | E241V | gAA | gTG | 1 | 1 | P.1 | 0.000016 |
ORF3a | 241 | E241A | gAa | gCa | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 241 | E241X | Gaa | Taa | 1 | 1 | P.1.9 | 0.004808 |
ORF3a | 241 | E241del | GAA | --- | 1 | 1 | R.1 | 0.00009 |
ORF3a | 241 | E241A | gAa | gCa | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|