CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 241

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a241E241DnonsyngaAgaC9969440.94779126113-26115
ORF3a241E241DnonsyngaAgaT996520.052208826113-26115
ORF3a241E241XnonsynGaaTaa591591126113-26115
ORF3a241E241KnonsynGaaAaa187187126113-26115
ORF3a241E241EsyngaAgaG167167126113-26115
ORF3a241E241GnonsyngAagGa1411390.98581626113-26115
ORF3a241E241GnonsyngAAgGG14120.014184426113-26115
ORF3a241E241VnonsyngAagTa89860.96629226113-26115
ORF3a241E241VnonsyngAAgTT8920.022471926113-26115
ORF3a241E241VnonsyngAAgTG8910.01123626113-26115
ORF3a241E241QnonsynGaaCaa8686126113-26115
ORF3a241E241deldelGAA---4545126113-26115
ORF3a241E241AnonsyngAagCa34320.94117626113-26115
ORF3a241E241AnonsyngAAgCG3410.029411826113-26115
ORF3a241E241AnonsyngAAgCC3410.029411826113-26115
ORF3a241E241del1delGaa-aa430.7526113-26115
ORF3a241E241del1delgAag-a410.2526113-26115
ORF3a241E241RnonsynGAACGG11126113-26115
ORF3a241E241NnonsynGaAAaC11126113-26115
ORF3a241E241LnonsynGAaCTa11126113-26115

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a241E241DgaAgaC944996All0.000181
ORF3a241E241DgaAgaT52996All0.00001
ORF3a241E241DgaAgaC654666B.1.1.70.000585
ORF3a241E241DgaAgaT12666B.1.1.70.000011
ORF3a241E241XGaaTaa591591All0.000113
ORF3a241E241XGaaTaa189189AY.40.000294
ORF3a241E241KGaaAaa187187All0.000036
ORF3a241E241EgaAgaG167167All0.000032
ORF3a241E241GgAagGa139141All0.000027
ORF3a241E241GgAAgGG2141All0
ORF3a241E241VgAagTa8689All0.000016
ORF3a241E241VgAAgTT289All0
ORF3a241E241VgAAgTG189All0
ORF3a241E241QGaaCaa8686All0.000016
ORF3a241E241XGaaTaa7777B.1.1.70.000069
ORF3a241E241KGaaAaa7373B.1.1600.002277
ORF3a241E241EgaAgaG4949AY.40.000076
ORF3a241E241DgaAgaC4949B.1.1.2220.009996
ORF3a241E241delGAA---4545All0.000009
ORF3a241E241GgAagGa4040B.1.1.70.000036
ORF3a241E241XGaaTaa3636AY.430.000159
ORF3a241E241AgAagCa3234All0.000006
ORF3a241E241AgAAgCC134All0
ORF3a241E241AgAAgCG134All0
ORF3a241E241DgaAgaC2633B.1.617.20.000098
ORF3a241E241DgaAgaT733B.1.617.20.000026
ORF3a241E241QGaaCaa3232AY.40.00005
ORF3a241E241XGaaTaa3030AY.1030.000186
ORF3a241E241EgaAgaG2828AY.440.00017
ORF3a241E241DgaAgaC2128AY.440.000128
ORF3a241E241DgaAgaT728AY.440.000043
ORF3a241E241EgaAgaG2727AY.30.000269
ORF3a241E241VgAagTa2727AY.40.000042
ORF3a241E241XGaaTaa2323AY.30.000229
ORF3a241E241DgaAgaC2323B.1.596.10.214953
ORF3a241E241XGaaTaa2323B.1.617.20.000087
ORF3a241E241DgaAgaC2121AY.430.000093
ORF3a241E241XGaaTaa2121AY.440.000128
ORF3a241E241DgaAgaC1821B.10.000165
ORF3a241E241DgaAgaT321B.10.000027
ORF3a241E241VgAagTa1919B.1.1.70.000017
ORF3a241E241KGaaAaa1717AY.40.000026
ORF3a241E241DgaAgaC1717B.1.36.290.008795
ORF3a241E241KGaaAaa1515B.1.1.70.000013
ORF3a241E241EgaAgaG1515B.1.617.20.000056
ORF3a241E241QGaaCaa1414B.1.1.5140.538462
ORF3a241E241DgaAgaC1313AY.140.001144
ORF3a241E241EgaAgaG1313AY.90.000879
ORF3a241E241KGaaAaa1313B.1.10.000236
ORF3a241E241GgAagGa1313B.1.617.20.000049
ORF3a241E241XGaaTaa1111B.1.5260.000259
ORF3a241E241DgaAgaC610P.10.000095
ORF3a241E241DgaAgaT410P.10.000063
ORF3a241E241DgaAgaC1010Q.80.001649
ORF3a241E241VgAagTa99AY.1030.000056
ORF3a241E241DgaAgaC99AY.30.00009
ORF3a241E241DgaAgaC99B.1.1770.000119
ORF3a241E241XGaaTaa99B.1.5250.001018
ORF3a241E241KGaaAaa99B.1.617.20.000034
ORF3a241E241DgaAgaC78AY.1030.000043
ORF3a241E241DgaAgaT18AY.1030.000006
ORF3a241E241GgAagGa88AY.430.000035
ORF3a241E241XGaaTaa88AY.50.000165
ORF3a241E241delGAA---88AY.50.000165
ORF3a241E241GgAagGa88AY.99.20.000737
ORF3a241E241GgAagGa78B.1.10.000127
ORF3a241E241GgAAgGG18B.1.10.000018
ORF3a241E241DgaAgaC88B.1.20.00007
ORF3a241E241QGaaCaa88B.1.617.20.00003
ORF3a241E241VgAagTa88B.1.617.20.00003
ORF3a241E241GgAagGa77Y.10.089744
ORF3a241E241DgaAgaC66AY.250.000036
ORF3a241E241XGaaTaa66AY.250.000036
ORF3a241E241DgaAgaC46AY.40.000006
ORF3a241E241DgaAgaT26AY.40.000003
ORF3a241E241XGaaTaa66AY.4.20.00013
ORF3a241E241KGaaAaa66AY.440.000037
ORF3a241E241GgAagGa66AY.50.000124
ORF3a241E241DgaAgaT66AY.980.000474
ORF3a241E241XGaaTaa66B.10.000055
ORF3a241E241GgAagGa66B.10.000055
ORF3a241E241EgaAgaG66B.1.1.70.000005
ORF3a241E241EgaAgaG66B.1.4090.004687
ORF3a241E241AgAagCa66B.1.617.20.000023
ORF3a241E241KGaaAaa55AY.430.000022
ORF3a241E241XGaaTaa55B.1.10.000091
ORF3a241E241EgaAgaG55B.1.1.10.001633
ORF3a241E241AgAagCa55B.1.1.70.000004
ORF3a241E241XGaaTaa55B.1.20.000044
ORF3a241E241XGaaTaa55B.1.2340.00066
ORF3a241E241XGaaTaa55B.1.5800.020325
ORF3a241E241delGAA---440.222222
ORF3a241E241del1Gaa-aa34All0.000001
ORF3a241E241del1gAag-a14All0
ORF3a241E241KGaaAaa44AY.1190.000141
ORF3a241E241XGaaTaa44AY.200.000155
ORF3a241E241KGaaAaa44AY.250.000024
ORF3a241E241delGAA---44AY.250.000024
ORF3a241E241DgaAgaT44AY.290.000063
ORF3a241E241delGAA---44AY.430.000018
ORF3a241E241XGaaTaa44AY.510.003636
ORF3a241E241XGaaTaa44AY.710.0019
ORF3a241E241XGaaTaa44AY.90.00027
ORF3a241E241XGaaTaa44AY.98.10.000194
ORF3a241E241delGAA---44B.1.1.70.000004
ORF3a241E241XGaaTaa44B.1.1600.000125
ORF3a241E241XGaaTaa44B.1.1770.000053
ORF3a241E241VgAagTa44B.1.20.000035
ORF3a241E241delGAA---44B.1.3510.000119
ORF3a241E241XGaaTaa44B.1.360.000584
ORF3a241E241KGaaAaa44B.1.4290.000094
ORF3a241E241delGAA---44B.1.5250.000453
ORF3a241E241XGaaTaa44B.1.5900.018182
ORF3a241E241XGaaTaa44C.350.003096
ORF3a241E241GgAagGa33AY.1040.005952
ORF3a241E241KGaaAaa33AY.390.000074
ORF3a241E241EgaAgaG33AY.390.000074
ORF3a241E241AgAagCa33AY.40.000005
ORF3a241E241AgAagCa33AY.4.50.000322
ORF3a241E241AgAagCa33AY.430.000013
ORF3a241E241QGaaCaa33AY.430.000013
ORF3a241E241GgAagGa33AY.440.000018
ORF3a241E241VgAAgTT23AY.50.000041
ORF3a241E241VgAagTa13AY.50.000021
ORF3a241E241DgaAgaC33AY.920.000862
ORF3a241E241GgAagGa33B.1.20.000026
ORF3a241E241AgAagCa33B.1.20.000026
ORF3a241E241QGaaCaa33B.1.20.000026
ORF3a241E241DgaAgaC33B.1.2430.000209
ORF3a241E241QGaaCaa33B.1.3960.002117
ORF3a241E241XGaaTaa33B.1.617.10.000387
ORF3a241E241DgaAgaC23B.1.6210.000177
ORF3a241E241DgaAgaT13B.1.6210.000089
ORF3a241E241QGaaCaa33P.10.000047
ORF3a241E241KGaaAaa220.111111
ORF3a241E241XGaaTaa22A.2.50.000998
ORF3a241E241AgAagCa22A.50.003846
ORF3a241E241XGaaTaa22AY.1000.000092
ORF3a241E241QGaaCaa22AY.1030.000012
ORF3a241E241DgaAgaC22AY.1140.000462
ORF3a241E241XGaaTaa22AY.1170.000169
ORF3a241E241XGaaTaa22AY.1200.000074
ORF3a241E241XGaaTaa22AY.190.002281
ORF3a241E241GgAagGa22AY.200.000078
ORF3a241E241AgAagCa22AY.250.000012
ORF3a241E241GgAagGa22AY.260.000057
ORF3a241E241XGaaTaa22AY.290.000032
ORF3a241E241QGaaCaa22AY.34.10.00102
ORF3a241E241XGaaTaa22AY.390.000049
ORF3a241E241delGAA---22AY.40.000003
ORF3a241E241GgAagGa22AY.40.000003
ORF3a241E241DgaAgaC22AY.410.000588
ORF3a241E241VgAagTa22AY.440.000012
ORF3a241E241XGaaTaa22AY.46.60.000144
ORF3a241E241DgaAgaC22AY.5.40.000553
ORF3a241E241QGaaCaa22AY.610.00021
ORF3a241E241GgAagGa22AY.890.009804
ORF3a241E241XGaaTaa22AY.940.000885
ORF3a241E241QGaaCaa22B.10.000018
ORF3a241E241VgAagTa22B.1.10.000036
ORF3a241E241XGaaTaa22B.1.1.3170.000823
ORF3a241E241XGaaTaa22B.1.1.3180.000604
ORF3a241E241GgAagGa22B.1.1.700.000682
ORF3a241E241EgaAgaG22B.1.1600.000062
ORF3a241E241GgAagGa22B.1.1770.000026
ORF3a241E241KGaaAaa22B.1.20.000018
ORF3a241E241delGAA---22B.1.20.000018
ORF3a241E241DgaAgaC22B.1.2350.005038
ORF3a241E241XGaaTaa22B.1.2390.002442
ORF3a241E241KGaaAaa22B.1.3510.000059
ORF3a241E241XGaaTaa22B.1.3510.000059
ORF3a241E241DgaAgaT12B.1.3510.00003
ORF3a241E241DgaAgaC12B.1.3510.00003
ORF3a241E241QGaaCaa22B.1.36.190.018519
ORF3a241E241XGaaTaa22B.1.4270.000101
ORF3a241E241XGaaTaa22B.1.4290.000047
ORF3a241E241VgAagTa22B.1.4290.000047
ORF3a241E241VgAagTa22B.1.466.20.000782
ORF3a241E241GgAagGa22B.1.5650.001621
ORF3a241E241del1Gaa-aa22B.1.5960.000174
ORF3a241E241KGaaAaa22B.1.6210.000177
ORF3a241E241XGaaTaa22B.1.6210.000177
ORF3a241E241XGaaTaa22C.370.000232
ORF3a241E241DgaAgaC12D.20.000075
ORF3a241E241DgaAgaT12D.20.000075
ORF3a241E241XGaaTaa22P.10.000032
ORF3a241E241DgaAgaC22P.1.150.000465
ORF3a241E241XGaaTaa22Q.30.00029
ORF3a241E241GgAagGa11A.10.000282
ORF3a241E241QGaaCaa11A.2.50.000499
ORF3a241E241XGaaTaa11A.270.001656
ORF3a241E241NGaAAaC11All0
ORF3a241E241RGAACGG11All0
ORF3a241E241LGAaCTa11All0
ORF3a241E241DgaAgaC11AT.10.005128
ORF3a241E241DgaAgaT11AY.1000.000046
ORF3a241E241VgAagTa11AY.1020.000027
ORF3a241E241delGAA---11AY.1020.000027
ORF3a241E241XGaaTaa11AY.1020.000027
ORF3a241E241KGaaAaa11AY.1030.000006
ORF3a241E241GgAagGa11AY.1060.000335
ORF3a241E241VgAagTa11AY.1070.000466
ORF3a241E241XGaaTaa11AY.1100.000113
ORF3a241E241XGaaTaa11AY.1110.000183
ORF3a241E241DgaAgaC11AY.1160.000287
ORF3a241E241XGaaTaa11AY.1180.000063
ORF3a241E241XGaaTaa11AY.1190.000035
ORF3a241E241KGaaAaa11AY.1200.000037
ORF3a241E241DgaAgaC11AY.16.10.00047
ORF3a241E241EgaAgaG11AY.200.000039
ORF3a241E241VgAagTa11AY.230.00007
ORF3a241E241KGaaAaa11AY.230.00007
ORF3a241E241QGaaCaa11AY.230.00007
ORF3a241E241VgAagTa11AY.250.000006
ORF3a241E241VgAagTa11AY.260.000028
ORF3a241E241XGaaTaa11AY.260.000028
ORF3a241E241XGaaTaa11AY.270.000065
ORF3a241E241GgAagGa11AY.290.000016
ORF3a241E241KGaaAaa11AY.30.00001
ORF3a241E241EgaAgaG11AY.3.10.000085
ORF3a241E241AgAAgCC11AY.300.000396
ORF3a241E241KGaaAaa11AY.330.000067
ORF3a241E241XGaaTaa11AY.330.000067
ORF3a241E241DgaAgaC11AY.360.000148
ORF3a241E241VgAagTa11AY.360.000148
ORF3a241E241DgaAgaC11AY.390.000025
ORF3a241E241NGaAAaC11AY.39.10.00004
ORF3a241E241KGaaAaa11AY.4.20.000022
ORF3a241E241XGaaTaa11AY.4.2.10.000149
ORF3a241E241KGaaAaa11AY.4.40.000409
ORF3a241E241KGaaAaa11AY.4.50.000107
ORF3a241E241EgaAgaG11AY.430.000004
ORF3a241E241QGaaCaa11AY.440.000006
ORF3a241E241XGaaTaa11AY.450.000122
ORF3a241E241DgaAgaC11AY.460.000104
ORF3a241E241XGaaTaa11AY.46.50.000198
ORF3a241E241KGaaAaa11AY.46.60.000072
ORF3a241E241XGaaTaa11AY.470.000031
ORF3a241E241KGaaAaa11AY.470.000031
ORF3a241E241KGaaAaa11AY.50.000021
ORF3a241E241DgaAgaC11AY.50.000021
ORF3a241E241XGaaTaa11AY.530.000288
ORF3a241E241EgaAgaG11AY.540.000095
ORF3a241E241QGaaCaa11AY.540.000095
ORF3a241E241GgAagGa11AY.560.001605
ORF3a241E241VgAagTa11AY.60.000041
ORF3a241E241GgAagGa11AY.610.000105
ORF3a241E241XGaaTaa11AY.620.000436
ORF3a241E241KGaaAaa11AY.650.000533
ORF3a241E241RGAACGG11AY.670.000464
ORF3a241E241XGaaTaa11AY.670.000464
ORF3a241E241GgAAgGG11AY.670.000464
ORF3a241E241delGAA---11AY.680.000274
ORF3a241E241XGaaTaa11AY.680.000274
ORF3a241E241GgAagGa11AY.690.000187
ORF3a241E241XGaaTaa11AY.7.10.000113
ORF3a241E241DgaAgaC11AY.720.001361
ORF3a241E241EgaAgaG11AY.750.000056
ORF3a241E241XGaaTaa11AY.840.000437
ORF3a241E241DgaAgaC11AY.90.000068
ORF3a241E241GgAagGa11AY.9.10.000084
ORF3a241E241XGaaTaa11AY.9.20.000037
ORF3a241E241AgAagCa11AY.920.000287
ORF3a241E241DgaAgaC11AY.98.10.000048
ORF3a241E241QGaaCaa11AY.98.10.000048
ORF3a241E241VgAagTa11AY.98.10.000048
ORF3a241E241GgAagGa11AY.990.001049
ORF3a241E241del1Gaa-aa11B.10.000009
ORF3a241E241EgaAgaG11B.1.10.000018
ORF3a241E241DgaAgaC11B.1.10.000018
ORF3a241E241del1gAag-a11B.1.10.000018
ORF3a241E241AgAAgCG11B.1.10.000018
ORF3a241E241XGaaTaa11B.1.1.100.001115
ORF3a241E241XGaaTaa11B.1.1.1650.015385
ORF3a241E241EgaAgaG11B.1.1.1940.00495
ORF3a241E241VgAagTa11B.1.1.2010.02439
ORF3a241E241XGaaTaa11B.1.1.2140.000055
ORF3a241E241DgaAgaT11B.1.1.2140.000055
ORF3a241E241EgaAgaG11B.1.1.2140.000055
ORF3a241E241XGaaTaa11B.1.1.2220.000204
ORF3a241E241KGaaAaa11B.1.1.280.000311
ORF3a241E241KGaaAaa11B.1.1.3050.003861
ORF3a241E241LGAaCTa11B.1.1.3060.000438
ORF3a241E241delGAA---11B.1.1.3060.000438
ORF3a241E241delGAA---11B.1.1.3110.000358
ORF3a241E241delGAA---11B.1.1.330.000421
ORF3a241E241XGaaTaa11B.1.1.3340.016393
ORF3a241E241XGaaTaa11B.1.1.3690.000446
ORF3a241E241DgaAgaC11B.1.1.390.00051
ORF3a241E241XGaaTaa11B.1.1.4320.001266
ORF3a241E241DgaAgaC11B.1.1.4340.000349
ORF3a241E241DgaAgaC11B.1.1.4580.041667
ORF3a241E241QGaaCaa11B.1.1.5190.00004
ORF3a241E241DgaAgaC11B.1.1.5190.00004
ORF3a241E241KGaaAaa11B.1.1.5230.001563
ORF3a241E241KGaaAaa11B.1.1.5260.003546
ORF3a241E241QGaaCaa11B.1.1.70.000001
ORF3a241E241GgAagGa11B.1.160.120.00641
ORF3a241E241XGaaTaa11B.1.160.140.002119
ORF3a241E241KGaaAaa11B.1.160.150.00495
ORF3a241E241DgaAgaC11B.1.160.260.002421
ORF3a241E241GgAagGa11B.1.160.280.002924
ORF3a241E241KGaaAaa11B.1.160.300.002976
ORF3a241E241delGAA---11B.1.1770.000013
ORF3a241E241KGaaAaa11B.1.1770.000013
ORF3a241E241XGaaTaa11B.1.177.150.000631
ORF3a241E241KGaaAaa11B.1.177.170.000821
ORF3a241E241KGaaAaa11B.1.177.310.011494
ORF3a241E241XGaaTaa11B.1.177.40.000211
ORF3a241E241XGaaTaa11B.1.177.570.000281
ORF3a241E241XGaaTaa11B.1.177.620.001192
ORF3a241E241AgAagCa11B.1.177.620.001192
ORF3a241E241DgaAgaC11B.1.177.70.000165
ORF3a241E241delGAA---11B.1.177.730.000566
ORF3a241E241XGaaTaa11B.1.177.870.000728
ORF3a241E241EgaAgaG11B.1.20.000009
ORF3a241E241GgAagGa11B.1.2100.002132
ORF3a241E241QGaaCaa11B.1.2320.000537
ORF3a241E241XGaaTaa11B.1.2430.00007
ORF3a241E241EgaAgaG11B.1.2580.000067
ORF3a241E241XGaaTaa11B.1.2580.000067
ORF3a241E241KGaaAaa11B.1.2580.000067
ORF3a241E241XGaaTaa11B.1.258.170.000104
ORF3a241E241XGaaTaa11B.1.2600.003344
ORF3a241E241GgAagGa11B.1.3110.000275
ORF3a241E241DgaAgaC11B.1.3430.020833
ORF3a241E241AgAagCa11B.1.3510.00003
ORF3a241E241GgAagGa11B.1.3560.001727
ORF3a241E241XGaaTaa11B.1.36.10.00114
ORF3a241E241KGaaAaa11B.1.36.290.000517
ORF3a241E241KGaaAaa11B.1.36.380.001642
ORF3a241E241XGaaTaa11B.1.3690.000285
ORF3a241E241DgaAgaC11B.1.3910.001127
ORF3a241E241XGaaTaa11B.1.3960.000706
ORF3a241E241QGaaCaa11B.1.4270.00005
ORF3a241E241GgAagGa11B.1.4290.000024
ORF3a241E241XGaaTaa11B.1.438.10.000107
ORF3a241E241EgaAgaG11B.1.466.20.000391
ORF3a241E241delGAA---11B.1.4970.000315
ORF3a241E241DgaAgaC11B.1.5200.021739
ORF3a241E241QGaaCaa11B.1.5250.000113
ORF3a241E241DgaAgaC11B.1.5250.000113
ORF3a241E241DgaAgaT11B.1.5380.008065
ORF3a241E241EgaAgaG11B.1.5600.00463
ORF3a241E241GgAagGa11B.1.5820.000491
ORF3a241E241GgAagGa11B.1.5950.000261
ORF3a241E241VgAagTa11B.1.6210.000089
ORF3a241E241XGaaTaa11B.1.621.10.000506
ORF3a241E241EgaAgaG11B.1.6280.000352
ORF3a241E241GgAagGa11B.1.6280.000352
ORF3a241E241XGaaTaa11B.1.6360.006711
ORF3a241E241GgAagGa11B.1.6370.000073
ORF3a241E241DgaAgaC11B.1.6370.000073
ORF3a241E241KGaaAaa11B.1.6370.000073
ORF3a241E241XGaaTaa11B.6.60.000889
ORF3a241E241GgAagGa11C.10.002392
ORF3a241E241GgAagGa11C.30.007634
ORF3a241E241DgaAgaC11C.350.000774
ORF3a241E241KGaaAaa11C.370.000116
ORF3a241E241GgAagGa11P.10.000016
ORF3a241E241VgAAgTG11P.10.000016
ORF3a241E241AgAagCa11P.1.170.000162
ORF3a241E241XGaaTaa11P.1.90.004808
ORF3a241E241delGAA---11R.10.00009
ORF3a241E241AgAagCa11U.30.003861