CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 240

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a240P240SnonsynCctTct17374173720.99988526110-26112
ORF3a240P240SnonsynCcTTcC1737420.00011511526110-26112
ORF3a240P240LnonsyncCtcTt10428104210.99932926110-26112
ORF3a240P240LnonsyncCTcTA1042870.0006712726110-26112
ORF3a240P240PsynccTccC9018300.92119926110-26112
ORF3a240P240PsynccTccA901540.059933426110-26112
ORF3a240P240PsynccTccG901170.018867926110-26112
ORF3a240P240HnonsyncCtcAt827827126110-26112
ORF3a240P240RnonsyncCtcGt103103126110-26112
ORF3a240P240TnonsynCctAct88870.98863626110-26112
ORF3a240P240TnonsynCcTAcG8810.011363626110-26112
ORF3a240P240deldelCCT---4444126110-26112
ORF3a240P240FnonsynCCtTTt77126110-26112
ORF3a240P240AnonsynCctGct66126110-26112
ORF3a240P240del1delccTcc-520.426110-26112
ORF3a240P240del1delCct-ct520.426110-26112
ORF3a240P240del1delCcT-cA510.226110-26112
ORF3a240P240VnonsynCCtGTt22126110-26112
ORF3a240P240DnonsynCCtGAt11126110-26112
ORF3a240P240QnonsyncCTcAA11126110-26112

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a240P240SCctTct1737217374All0.003323
ORF3a240P240SCcTTcC217374All0
ORF3a240P240SCctTct1152511525B.1.1.70.010317
ORF3a240P240LcCtcTt1042110428All0.001993
ORF3a240P240LcCTcTA710428All0.000001
ORF3a240P240LcCtcTt19311931AY.40.003005
ORF3a240P240LcCtcTt15991603B.1.1.70.001431
ORF3a240P240LcCTcTA41603B.1.1.70.000004
ORF3a240P240LcCtcTt917917AY.420.036891
ORF3a240P240PccTccC830901All0.000159
ORF3a240P240PccTccA54901All0.00001
ORF3a240P240PccTccG17901All0.000003
ORF3a240P240HcCtcAt827827All0.000158
ORF3a240P240LcCtcTt753753AY.440.004583
ORF3a240P240LcCtcTt743743B.1.20.006542
ORF3a240P240SCctTct669669AY.30.006654
ORF3a240P240HcCtcAt614614B.1.617.20.002312
ORF3a240P240LcCtcTt600600B.1.617.20.002259
ORF3a240P240SCctTct516516AY.40.000803
ORF3a240P240SCctTct426426B.10.003902
ORF3a240P240SCctTct390390B.1.2400.08407
ORF3a240P240LcCtcTt382382B.1.4270.01929
ORF3a240P240PccTccC315315AY.230.021971
ORF3a240P240SCctTct313313AY.1190.011051
ORF3a240P240SCctTct258258Q.80.042546
ORF3a240P240SCctTct246246B.1.617.20.000926
ORF3a240P240LcCtcTt223223AY.1030.001385
ORF3a240P240SCctTct208208AY.490.664537
ORF3a240P240LcCtcTt173173AY.430.000766
ORF3a240P240LcCtcTt167167AY.390.004127
ORF3a240P240SCctTct157157AY.1030.000975
ORF3a240P240SCctTct152152P.10.002395
ORF3a240P240SCctTct147148AY.250.000884
ORF3a240P240SCcTTcC1148AY.250.000006
ORF3a240P240LcCtcTt143143AY.250.00086
ORF3a240P240LcCtcTt141141B.10.001291
ORF3a240P240SCctTct134134B.1.10.002431
ORF3a240P240LcCtcTt133133B.1.466.10.956835
ORF3a240P240SCctTct126126AY.430.000558
ORF3a240P240SCctTct126126B.1.20.001109
ORF3a240P240LcCtcTt118118AY.46.40.019411
ORF3a240P240SCctTct116116B.1.1.2190.58
ORF3a240P240PccTccC114114C.380.919355
ORF3a240P240LcCtcTt109109B.1.5960.009498
ORF3a240P240LcCtcTt106106AY.290.001672
ORF3a240P240RcCtcGt103103All0.00002
ORF3a240P240SCctTct102102B.1.5710.990291
ORF3a240P240PccTccC9999AY.470.003079
ORF3a240P240TCctAct8788All0.000017
ORF3a240P240TCcTAcG188All0
ORF3a240P240SCctTct8787AY.440.00053
ORF3a240P240LcCtcTt8585B.1.1.1410.171026
ORF3a240P240LcCtcTt8485P.10.001323
ORF3a240P240LcCTcTA185P.10.000016
ORF3a240P240LcCtcTt8383B.1.5260.001951
ORF3a240P240LcCtcTt7878B.1.438.10.008366
ORF3a240P240LcCtcTt7474AY.1020.001962
ORF3a240P240SCctTct7474Q.30.010732
ORF3a240P240LcCtcTt7070B.1.351.20.02118
ORF3a240P240LcCtcTt6666AY.140.005809
ORF3a240P240LcCtcTt6666B.1.4290.001553
ORF3a240P240LcCtcTt6363B.1.10.001143
ORF3a240P240SCctTct6262B.1.1770.000816
ORF3a240P240SCctTct6060AY.46.20.038119
ORF3a240P240SCctTct5252AY.290.00082
ORF3a240P240SCctTct4848B.1.2210.00341
ORF3a240P240LcCtcTt4848B.1.6040.827586
ORF3a240P240SCctTct4747B.1.1600.001466
ORF3a240P240LcCtcTt4747B.1.1770.000619
ORF3a240P240delCCT---4444All0.000008
ORF3a240P240LcCtcTt4444AY.116.10.013703
ORF3a240P240SCctTct4444AY.50.000909
ORF3a240P240LcCtcTt4343AY.30.000428
ORF3a240P240RcCtcGt4343AY.430.000191
ORF3a240P240LcCtcTt4243B.1.3510.001249
ORF3a240P240LcCTcTA143B.1.3510.00003
ORF3a240P240LcCtcTt4242C.370.004875
ORF3a240P240LcCtcTt4141AY.39.10.001624
ORF3a240P240SCctTct4141B.1.2580.002728
ORF3a240P240LcCtcTt4040AY.470.001244
ORF3a240P240SCctTct4040B.1.3510.001189
ORF3a240P240PccTccC2139B.1.1.70.000019
ORF3a240P240PccTccA1839B.1.1.70.000016
ORF3a240P240PccTccC2637B.1.617.20.000098
ORF3a240P240PccTccA1137B.1.617.20.000041
ORF3a240P240SCctTct3536AY.230.002441
ORF3a240P240SCcTTcC136AY.230.00007
ORF3a240P240LcCtcTt3636AY.260.001019
ORF3a240P240PccTccC3536AY.30.000348
ORF3a240P240PccTccA136AY.30.00001
ORF3a240P240LcCtcTt3434B.1.1.2140.001886
ORF3a240P240LcCtcTt3434B.1.1.5190.00135
ORF3a240P240SCctTct3434B.1.2340.004486
ORF3a240P240SCctTct3434B.1.6390.73913
ORF3a240P240SCctTct3232AY.1180.002005
ORF3a240P240SCctTct3030B.1.4270.001515
ORF3a240P240SCctTct2929AY.4.20.000629
ORF3a240P240LcCtcTt2929B.1.6210.002567
ORF3a240P240TCctAct2929P.10.000457
ORF3a240P240SCctTct2828B.1.1.5190.001112
ORF3a240P240LcCtcTt2727AY.1190.000953
ORF3a240P240HcCtcAt2727AY.30.000269
ORF3a240P240LcCtcTt2727P.20.005039
ORF3a240P240LcCtcTt2626AY.50.000537
ORF3a240P240SCctTct2626Q.10.003284
ORF3a240P240HcCtcAt2525AY.430.000111
ORF3a240P240SCctTct2525B.1.177.810.004733
ORF3a240P240LcCtcTt2525B.1.360.003648
ORF3a240P240LcCtcTt2424AY.1000.001104
ORF3a240P240LcCtcTt2424AY.320.01278
ORF3a240P240HcCtcAt2424B.1.1.70.000021
ORF3a240P240LcCtcTt2424B.1.177.240.031088
ORF3a240P240SCctTct2323AY.260.000651
ORF3a240P240PccTccC2323AY.34.10.011729
ORF3a240P240LcCtcTt2323B.1.2430.0016
ORF3a240P240SCctTct2222AY.390.000544
ORF3a240P240PccTccC2222B.1.1600.000686
ORF3a240P240SCctTct2222B.1.2430.001531
ORF3a240P240SCctTct2121AY.200.000816
ORF3a240P240PccTccC2121AY.75.10.003787
ORF3a240P240PccTccC2020AY.340.001939
ORF3a240P240LcCtcTt2020AY.4.40.008183
ORF3a240P240LcCtcTt1919AY.200.000738
ORF3a240P240LcCtcTt1919AY.9.20.000698
ORF3a240P240LcCtcTt1919B.1.2210.00135
ORF3a240P240LcCtcTt1919B.1.2580.001264
ORF3a240P240SCctTct1919B.1.4290.000447
ORF3a240P240SCctTct1818A.270.029801
ORF3a240P240LcCtcTt1818AY.1180.001128
ORF3a240P240HcCtcAt1818AY.40.000028
ORF3a240P240RcCtcGt1818B.1.1.70.000016
ORF3a240P240LcCtcTt1818B.1.1600.000561
ORF3a240P240HcCtcAt1818B.1.177.860.003302
ORF3a240P240SCctTct1717AY.1170.001437
ORF3a240P240LcCtcTt1717AY.1200.000632
ORF3a240P240SCctTct1717AY.470.000529
ORF3a240P240TCctAct1717AY.540.001621
ORF3a240P240SCctTct1717B.1.1.2160.015138
ORF3a240P240SCctTct1717B.1.6370.001242
ORF3a240P240SCctTct1616AY.1020.000424
ORF3a240P240LcCtcTt1616AY.1070.007456
ORF3a240P240PccTccC1616AY.330.001068
ORF3a240P240LcCtcTt1616AY.4.20.000347
ORF3a240P240SCctTct1616AY.540.001526
ORF3a240P240SCctTct1616AY.980.001264
ORF3a240P240SCctTct1616B.1.1.280.00498
ORF3a240P240LcCtcTt1616B.1.4700.022472
ORF3a240P240LcCtcTt1616B.1.6370.001169
ORF3a240P240LcCtcTt1515AY.880.013263
ORF3a240P240SCctTct1414AY.460.001457
ORF3a240P240LcCtcTt1414AY.590.007415
ORF3a240P240SCctTct1414B.1.1.2140.000776
ORF3a240P240SCctTct1414B.1.177.730.007928
ORF3a240P240PccTccC1013AY.430.000044
ORF3a240P240PccTccA313AY.430.000013
ORF3a240P240PccTccC1213AY.440.000073
ORF3a240P240PccTccA113AY.440.000006
ORF3a240P240SCctTct1313B.1.5260.000306
ORF3a240P240SCctTct1212AY.1140.002773
ORF3a240P240SCctTct1212AY.1210.001624
ORF3a240P240SCctTct1212AY.160.004556
ORF3a240P240HcCtcAt1212AY.4.20.00026
ORF3a240P240LcCtcTt1212AY.9.10.001005
ORF3a240P240SCctTct1212B.1.177.210.000918
ORF3a240P240SCctTct1212B.1.177.620.014303
ORF3a240P240LcCtcTt1212B.1.2340.001583
ORF3a240P240SCctTct1212B.1.4970.003777
ORF3a240P240LcCtcTt1212B.1.5750.003641
ORF3a240P240LcCtcTt1212B.1.617.10.001548
ORF3a240P240LcCtcTt1212P.1.140.000574
ORF3a240P240LcCtcTt1212Q.80.001979
ORF3a240P240LcCtcTt1111AY.450.001339
ORF3a240P240LcCtcTt1111AY.610.001153
ORF3a240P240LcCtcTt1111B.1.1.2410.022774
ORF3a240P240SCctTct1111B.1.1.630.004244
ORF3a240P240SCctTct1111B.1.177.790.025761
ORF3a240P240SCctTct1111B.1.258.170.001144
ORF3a240P240SCctTct1111B.1.36.290.005691
ORF3a240P240PccTccG1011C.370.001161
ORF3a240P240PccTccC111C.370.000116
ORF3a240P240RcCtcGt1111P.10.000173
ORF3a240P240SCctTct1111P.1.100.002964
ORF3a240P240TCctAct1010AY.40.000016
ORF3a240P240PccTccC610AY.40.000009
ORF3a240P240PccTccA310AY.40.000005
ORF3a240P240PccTccG110AY.40.000002
ORF3a240P240LcCtcTt1010AY.460.001041
ORF3a240P240HcCtcAt1010B.10.000092
ORF3a240P240HcCtcAt1010B.1.1.2160.008905
ORF3a240P240SCctTct1010B.1.1.2220.00204
ORF3a240P240LcCtcTt1010B.1.1.330.004209
ORF3a240P240SCctTct1010B.1.177.120.001517
ORF3a240P240PccTccC1010B.1.20.000088
ORF3a240P240SCctTct99AY.1000.000414
ORF3a240P240PccTccC79AY.1030.000043
ORF3a240P240PccTccG19AY.1030.000006
ORF3a240P240PccTccA19AY.1030.000006
ORF3a240P240LcCtcTt99AY.240.003879
ORF3a240P240LcCtcTt99B.1.1.2650.028391
ORF3a240P240SCctTct99B.1.1.3160.008326
ORF3a240P240SCctTct99B.1.438.10.000965
ORF3a240P240SCctTct99B.1.5960.000784
ORF3a240P240SCctTct99B.1.6090.004314
ORF3a240P240SCctTct99C.370.001045
ORF3a240P240LcCtcTt88AY.230.000558
ORF3a240P240LcCtcTt88AY.3.10.000682
ORF3a240P240delCCT---88AY.50.000165
ORF3a240P240LcCtcTt88AY.540.000763
ORF3a240P240SCctTct88B.1.1.4640.011782
ORF3a240P240LcCtcTt88B.1.4000.003432
ORF3a240P240FCCtTTt77All0.000001
ORF3a240P240PccTccC77AY.250.000042
ORF3a240P240SCctTct77AY.360.001037
ORF3a240P240HcCtcAt77AY.440.000043
ORF3a240P240LcCtcTt77AY.5.30.002362
ORF3a240P240PccTccC77AY.740.00081
ORF3a240P240SCctTct77AY.750.000392
ORF3a240P240LcCtcTt77AY.920.002011
ORF3a240P240LcCtcTt77B.1.1.2160.006233
ORF3a240P240TCctAct77B.1.2430.000487
ORF3a240P240SCctTct77B.1.4660.162791
ORF3a240P240LcCtcTt77B.1.5820.003435
ORF3a240P240SCctTct77B.1.617.10.000903
ORF3a240P240SCctTct77B.1.6210.00062
ORF3a240P240LcCtcTt77P.1.150.001626
ORF3a240P240SCctTct77P.1.20.008092
ORF3a240P240ACctGct66All0.000001
ORF3a240P240LcCtcTt66AY.1130.000854
ORF3a240P240SCctTct66AY.130.000966
ORF3a240P240LcCtcTt66AY.75.10.001082
ORF3a240P240LcCtcTt66AY.980.000474
ORF3a240P240SCctTct66AZ.20.004926
ORF3a240P240SCctTct66B.1.1.330.002525
ORF3a240P240LcCtcTt66B.1.1.4170.016216
ORF3a240P240SCctTct66B.1.1280.003812
ORF3a240P240SCctTct66B.1.3690.001711
ORF3a240P240SCctTct66B.1.4620.043478
ORF3a240P240SCctTct66B.1.5950.001566
ORF3a240P240LcCtcTt66C.36.20.206897
ORF3a240P240HcCtcAt66C.370.000696
ORF3a240P240LcCtcTt66P.1.70.001916
ORF3a240P240LcCtcTt55A0.001935
ORF3a240P240del1Cct-ct25All0
ORF3a240P240del1ccTcc-25All0
ORF3a240P240del1CcT-cA15All0
ORF3a240P240SCctTct55AY.1200.000186
ORF3a240P240LcCtcTt55AY.20.001781
ORF3a240P240SCctTct55AY.240.002155
ORF3a240P240LcCtcTt55AY.330.000334
ORF3a240P240LcCtcTt55AY.360.000741
ORF3a240P240RcCtcGt55AY.40.000008
ORF3a240P240PccTccC55AY.460.00052
ORF3a240P240LcCtcTt55B.1.1.1920.011547
ORF3a240P240HcCtcAt55B.1.1.2690.006766
ORF3a240P240SCctTct55B.1.1.3490.051546
ORF3a240P240LcCtcTt55B.1.177.160.003322
ORF3a240P240LcCtcTt55B.1.177.210.000382
ORF3a240P240SCctTct55B.1.360.00073
ORF3a240P240LcCtcTt55B.1.5870.009488
ORF3a240P240TCctAct55B.1.617.20.000019
ORF3a240P240LcCtcTt55B.280.016393
ORF3a240P240HcCtcAt55P.10.000079
ORF3a240P240PccTccC35P.10.000047
ORF3a240P240PccTccG15P.10.000016
ORF3a240P240PccTccA15P.10.000016
ORF3a240P240delCCT---440.222222
ORF3a240P240LcCtcTt44AD.20.000876
ORF3a240P240PccTccA24AY.1020.000053
ORF3a240P240PccTccC24AY.1020.000053
ORF3a240P240LcCtcTt44AY.120.001264
ORF3a240P240PccTccC44AY.390.000099
ORF3a240P240delCCT---44AY.430.000018
ORF3a240P240LcCtcTt44AY.480.00186
ORF3a240P240LcCtcTt44AY.90.00027
ORF3a240P240SCctTct44B0.000511
ORF3a240P240PccTccC34B.10.000027
ORF3a240P240PccTccA14B.10.000009
ORF3a240P240PccTccA44B.1.10.000073
ORF3a240P240LcCtcTt44B.1.1.1640.020619
ORF3a240P240LcCtcTt44B.1.1.2220.000816
ORF3a240P240LcCtcTt44B.1.1.3060.001754
ORF3a240P240SCctTct44B.1.1.390.002039
ORF3a240P240PccTccC44B.1.1.5190.000159
ORF3a240P240FCCtTTt44B.1.1.70.000004
ORF3a240P240TCctAct44B.1.1.70.000004
ORF3a240P240delCCT---44B.1.1.70.000004
ORF3a240P240SCctTct44B.1.2100.008529
ORF3a240P240SCctTct44B.1.214.20.002398
ORF3a240P240LcCtcTt44B.1.258.170.000416
ORF3a240P240LcCtcTt44B.1.2600.013378
ORF3a240P240delCCT---44B.1.3510.000119
ORF3a240P240SCctTct44B.1.3960.002823
ORF3a240P240HcCtcAt44B.1.4000.001716
ORF3a240P240SCctTct44B.1.5170.001708
ORF3a240P240LcCtcTt44B.1.5250.000453
ORF3a240P240delCCT---44B.1.5250.000453
ORF3a240P240SCctTct44B.1.5750.001214
ORF3a240P240LcCtcTt44B.1.5760.003626
ORF3a240P240SCctTct44B.1.5760.003626
ORF3a240P240SCctTct44B.1.6280.001409
ORF3a240P240LcCtcTt44B.1.6310.013468
ORF3a240P240LcCtcTt44Q.30.00058
ORF3a240P240LcCtcTt33A.2.50.001497
ORF3a240P240RcCtcGt33AY.1020.00008
ORF3a240P240RcCtcGt33AY.1030.000019
ORF3a240P240LcCtcTt33AY.1050.001929
ORF3a240P240LcCtcTt33AY.1160.00086
ORF3a240P240LcCtcTt33AY.1170.000254
ORF3a240P240PccTccA23AY.1200.000074
ORF3a240P240PccTccC13AY.1200.000037
ORF3a240P240LcCtcTt33AY.130.000483
ORF3a240P240LcCtcTt33AY.16.10.00141
ORF3a240P240delCCT---33AY.250.000018
ORF3a240P240del1Cct-ct13AY.250.000006
ORF3a240P240del1ccTcc-13AY.250.000006
ORF3a240P240del1CcT-cA13AY.250.000006
ORF3a240P240LcCtcTt33AY.270.000194
ORF3a240P240RcCtcGt33AY.290.000047
ORF3a240P240SCctTct33AY.3.10.000256
ORF3a240P240PccTccC33AY.3.10.000256
ORF3a240P240SCctTct33AY.330.0002
ORF3a240P240LcCtcTt33AY.34.10.00153
ORF3a240P240SCctTct33AY.34.10.00153
ORF3a240P240SCctTct33AY.420.000121
ORF3a240P240HcCtcAt33AY.420.000121
ORF3a240P240SCctTct33AY.450.000365
ORF3a240P240SCctTct33AY.5.40.00083
ORF3a240P240SCctTct33AY.610.000314
ORF3a240P240LcCtcTt33AY.620.001307
ORF3a240P240LcCtcTt33AY.690.00056
ORF3a240P240LcCtcTt33AY.7.10.000338
ORF3a240P240SCctTct33AY.840.001312
ORF3a240P240SCctTct33AY.9.20.00011
ORF3a240P240SCctTct33AY.920.000862
ORF3a240P240LcCtcTt33AY.98.10.000145
ORF3a240P240SCctTct33AY.99.20.000276
ORF3a240P240LcCtcTt33B.1.1.10.00098
ORF3a240P240SCctTct33B.1.1.250.001706
ORF3a240P240SCctTct33B.1.1.3060.001315
ORF3a240P240SCctTct33B.1.1.3170.001235
ORF3a240P240SCctTct33B.1.1.3180.000905
ORF3a240P240SCctTct33B.1.1.3260.005282
ORF3a240P240LcCtcTt33B.1.1.3800.029412
ORF3a240P240SCctTct33B.1.1.4200.003018
ORF3a240P240SCctTct33B.1.1110.003525
ORF3a240P240LcCtcTt33B.1.160.110.017143
ORF3a240P240LcCtcTt33B.1.160.160.002788
ORF3a240P240LcCtcTt33B.1.177.810.000568
ORF3a240P240PccTccC33B.1.177.860.00055
ORF3a240P240TCctAct33B.1.258.170.000312
ORF3a240P240LcCtcTt33B.1.3110.000824
ORF3a240P240LcCtcTt33B.1.3490.002144
ORF3a240P240HcCtcAt33B.1.3510.000089
ORF3a240P240SCctTct33B.1.36.180.001261
ORF3a240P240LcCtcTt33B.1.3950.021127
ORF3a240P240LcCtcTt33B.1.3960.002117
ORF3a240P240LcCtcTt33B.1.3980.008929
ORF3a240P240SCctTct33B.1.4250.008982
ORF3a240P240SCctTct33B.1.466.20.001174
ORF3a240P240SCctTct33B.1.5640.001278
ORF3a240P240LcCtcTt33B.1.5950.000783
ORF3a240P240HcCtcAt33C.360.002732
ORF3a240P240SCctTct33D.20.000225
ORF3a240P240SCctTct33K.20.12
ORF3a240P240SCctTct33L.30.010638
ORF3a240P240SCctTct33P.1.170.000485
ORF3a240P240SCctTct33P.1.70.000958
ORF3a240P240SCctTct33P.20.00056
ORF3a240P240LcCtcTt33P.60.009434
ORF3a240P240LcCtcTt33U.30.011583
ORF3a240P240VCCtGTt220.111111
ORF3a240P240SCctTct22A.230.021053
ORF3a240P240LcCtcTt22A.280.005291
ORF3a240P240VCCtGTt22All0
ORF3a240P240LcCtcTt22AU.20.004843
ORF3a240P240SCctTct22AY.1050.001286
ORF3a240P240SCctTct22AY.1100.000225
ORF3a240P240LcCtcTt22AY.1110.000366
ORF3a240P240SCctTct22AY.1160.000574
ORF3a240P240LcCtcTt22AY.160.000759
ORF3a240P240SCctTct22AY.220.004184
ORF3a240P240PccTccC22AY.240.000862
ORF3a240P240HcCtcAt22AY.250.000012
ORF3a240P240SCctTct22AY.270.000129
ORF3a240P240SCctTct22AY.29.10.000441
ORF3a240P240LcCtcTt22AY.29.10.000441
ORF3a240P240RcCtcGt22AY.30.00002
ORF3a240P240SCctTct22AY.320.001065
ORF3a240P240LcCtcTt22AY.350.000466
ORF3a240P240HcCtcAt22AY.360.000296
ORF3a240P240HcCtcAt22AY.390.000049
ORF3a240P240SCctTct22AY.39.10.000079
ORF3a240P240delCCT---22AY.40.000003
ORF3a240P240RcCtcGt22AY.440.000012
ORF3a240P240SCctTct22AY.46.40.000329
ORF3a240P240SCctTct22AY.46.60.000144
ORF3a240P240SCctTct22AY.60.000082
ORF3a240P240SCctTct22AY.650.001066
ORF3a240P240LcCTcTA12AY.650.000533
ORF3a240P240LcCtcTt12AY.650.000533
ORF3a240P240SCctTct22AY.680.000547
ORF3a240P240LcCtcTt22AY.680.000547
ORF3a240P240SCctTct22AY.7.10.000225
ORF3a240P240LcCtcTt22AY.740.000231
ORF3a240P240PccTccC22AY.750.000112
ORF3a240P240HcCtcAt22AY.75.10.000361
ORF3a240P240SCctTct22AY.9.10.000167
ORF3a240P240SCctTct22AY.930.000546
ORF3a240P240LcCtcTt22AY.940.000885
ORF3a240P240SCctTct22AY.98.10.000097
ORF3a240P240LcCtcTt22B0.000256
ORF3a240P240TCctAct22B.10.000018
ORF3a240P240SCctTct22B.1.1.1210.004854
ORF3a240P240SCctTct22B.1.1.1760.000879
ORF3a240P240SCctTct22B.1.1.2050.007435
ORF3a240P240LcCtcTt22B.1.1.2200.003717
ORF3a240P240LcCtcTt22B.1.1.280.000622
ORF3a240P240LcCtcTt22B.1.1.2840.000215
ORF3a240P240SCctTct22B.1.1.2890.004167
ORF3a240P240LcCtcTt22B.1.1.3070.005063
ORF3a240P240SCctTct22B.1.1.3110.000716
ORF3a240P240LcCtcTt22B.1.1.3260.003521
ORF3a240P240LcCtcTt22B.1.1.3720.001377
ORF3a240P240LcCtcTt22B.1.1.3740.004751
ORF3a240P240LcCtcTt22B.1.1.390.001019
ORF3a240P240LcCtcTt22B.1.1.4130.013793
ORF3a240P240SCctTct22B.1.1.4870.011173
ORF3a240P240LcCtcTt22B.1.1.630.000772
ORF3a240P240LcCtcTt22B.1.1.700.000682
ORF3a240P240LcCtcTt22B.1.1110.00235
ORF3a240P240SCctTct22B.1.1430.042553
ORF3a240P240SCctTct22B.1.160.320.008584
ORF3a240P240PccTccC22B.1.1770.000026
ORF3a240P240LcCtcTt22B.1.177.540.001213
ORF3a240P240PccTccA22B.1.177.600.000437
ORF3a240P240SCctTct22B.1.1950.01005
ORF3a240P240HcCtcAt22B.1.20.000018
ORF3a240P240delCCT---22B.1.20.000018
ORF3a240P240SCctTct22B.1.2080.08
ORF3a240P240LcCtcTt22B.1.214.20.001199
ORF3a240P240PccTccG12B.1.2210.000071
ORF3a240P240PccTccC12B.1.2210.000071
ORF3a240P240SCctTct22B.1.2320.001075
ORF3a240P240RcCtcGt22B.1.2580.000133
ORF3a240P240SCctTct22B.1.3250.013793
ORF3a240P240LcCtcTt22B.1.36.220.002415
ORF3a240P240SCctTct22B.1.36.270.001527
ORF3a240P240LcCtcTt22B.1.3990.003868
ORF3a240P240SCctTct22B.1.4000.000858
ORF3a240P240SCctTct22B.1.4040.002604
ORF3a240P240LcCtcTt22B.1.4280.002041
ORF3a240P240LcCtcTt22B.1.4600.035714
ORF3a240P240FCCtTTt22B.1.466.10.014388
ORF3a240P240LcCtcTt22B.1.4780.023529
ORF3a240P240SCctTct22B.1.4800.004975
ORF3a240P240SCctTct22B.1.4990.002101
ORF3a240P240LcCtcTt22B.1.5170.000854
ORF3a240P240TCctAct22B.1.5250.000226
ORF3a240P240HcCtcAt22B.1.5260.000047
ORF3a240P240LcCtcTt22B.1.5270.007407
ORF3a240P240SCctTct22B.1.5320.012422
ORF3a240P240SCctTct22B.1.575.10.004878
ORF3a240P240LcCtcTt22B.1.6090.000959
ORF3a240P240PccTccC22C.36.3.10.005435
ORF3a240P240LcCtcTt22D.20.00015
ORF3a240P240LcCtcTt22N.50.003534
ORF3a240P240HcCtcAt22P.1.10.000635
ORF3a240P240LcCtcTt22P.1.100.000539
ORF3a240P240SCctTct22P.1.140.000096
ORF3a240P240LcCtcTt22Q.10.000253
ORF3a240P240SCctTct22Q.70.002222
ORF3a240P240SCctTct22R.10.00018
ORF3a240P240LcCtcTt22R.10.00018
ORF3a240P240SCctTct22S.10.009901
ORF3a240P240SCctTct11A0.000387
ORF3a240P240LcCtcTt11A.10.000282
ORF3a240P240SCctTct11A.2.20.001689
ORF3a240P240SCctTct11A.2.50.000499
ORF3a240P240SCctTct11A.2.5.10.004808
ORF3a240P240LcCtcTt11A.2.5.20.001572
ORF3a240P240LcCtcTt11A.240.071429
ORF3a240P240SCctTct11AE.10.011364
ORF3a240P240DCCtGAt11All0
ORF3a240P240QcCTcAA11All0
ORF3a240P240SCctTct11AM.20.111111
ORF3a240P240LcCtcTt11AT.10.005128
ORF3a240P240HcCtcAt11AU.30.00211
ORF3a240P240SCctTct11AV.10.005051
ORF3a240P240LcCtcTt11AY.10.000396
ORF3a240P240SCctTct11AY.10.000396
ORF3a240P240del1Cct-ct11AY.10.000396
ORF3a240P240SCctTct11AY.100.00053
ORF3a240P240SCctTct11AY.1040.001984
ORF3a240P240SCctTct11AY.1110.000183
ORF3a240P240PccTccC11AY.1130.000142
ORF3a240P240SCctTct11AY.1130.000142
ORF3a240P240LcCtcTt11AY.1140.000231
ORF3a240P240HcCtcAt11AY.1170.000085
ORF3a240P240RcCtcGt11AY.1180.000063
ORF3a240P240HcCtcAt11AY.1190.000035
ORF3a240P240HcCtcAt11AY.1210.000135
ORF3a240P240LcCtcTt11AY.1210.000135
ORF3a240P240SCctTct11AY.140.000088
ORF3a240P240SCctTct11AY.16.10.00047
ORF3a240P240SCctTct11AY.190.00114
ORF3a240P240SCctTct11AY.20.000356
ORF3a240P240HcCtcAt11AY.200.000039
ORF3a240P240LcCtcTt11AY.220.002092
ORF3a240P240SCctTct11AY.23.10.000417
ORF3a240P240RcCtcGt11AY.250.000006
ORF3a240P240PccTccC11AY.270.000065
ORF3a240P240SCctTct11AY.300.000396
ORF3a240P240HcCtcAt11AY.300.000396
ORF3a240P240HcCtcAt11AY.330.000067
ORF3a240P240ACctGct11AY.350.000233
ORF3a240P240LcCtcTt11AY.380.000499
ORF3a240P240RcCtcGt11AY.390.000025
ORF3a240P240HcCtcAt11AY.39.10.00004
ORF3a240P240RcCtcGt11AY.39.10.00004
ORF3a240P240PccTccA11AY.4.20.000022
ORF3a240P240HcCtcAt11AY.4.40.000409
ORF3a240P240LcCtcTt11AY.4.50.000107
ORF3a240P240PccTccC11AY.46.10.001027
ORF3a240P240LcCtcTt11AY.46.30.000934
ORF3a240P240RcCtcGt11AY.46.30.000934
ORF3a240P240LcCtcTt11AY.46.60.000072
ORF3a240P240PccTccC11AY.46.60.000072
ORF3a240P240HcCtcAt11AY.470.000031
ORF3a240P240SCctTct11AY.5.30.000337
ORF3a240P240SCctTct11AY.530.000288
ORF3a240P240PccTccC11AY.530.000288
ORF3a240P240PccTccG11AY.540.000095
ORF3a240P240LcCtcTt11AY.550.000917
ORF3a240P240LcCtcTt11AY.560.001605
ORF3a240P240LcCtcTt11AY.570.000656
ORF3a240P240PccTccC11AY.580.000907
ORF3a240P240LcCtcTt11AY.60.000041
ORF3a240P240PccTccG11AY.60.000041
ORF3a240P240HcCtcAt11AY.610.000105
ORF3a240P240SCctTct11AY.620.000436
ORF3a240P240SCctTct11AY.630.000387
ORF3a240P240ACctGct11AY.670.000464
ORF3a240P240delCCT---11AY.680.000274
ORF3a240P240PccTccC11AY.690.000187
ORF3a240P240delCCT---11AY.70.000196
ORF3a240P240SCctTct11AY.730.000665
ORF3a240P240SCctTct11AY.75.10.00018
ORF3a240P240LcCtcTt11AY.770.001127
ORF3a240P240HcCtcAt11AY.820.001357
ORF3a240P240PccTccC11AY.840.000437
ORF3a240P240LcCtcTt11AY.840.000437
ORF3a240P240LcCtcTt11AY.850.000427
ORF3a240P240SCctTct11AY.850.000427
ORF3a240P240SCctTct11AY.870.000833
ORF3a240P240PccTccC11AY.9.20.000037
ORF3a240P240TCctAct11AY.910.00073
ORF3a240P240del1ccTcc-11AY.930.000273
ORF3a240P240SCctTct11AY.950.000761
ORF3a240P240PccTccC11AY.980.000079
ORF3a240P240TCctAct11B0.000128
ORF3a240P240PccTccC11B0.000128
ORF3a240P240ACctGct11B.10.000009
ORF3a240P240ACctGct11B.1.10.000018
ORF3a240P240RcCtcGt11B.1.10.000018
ORF3a240P240LcCtcTt11B.1.1.100.001115
ORF3a240P240SCctTct11B.1.1.1410.002012
ORF3a240P240LcCtcTt11B.1.1.1530.001095
ORF3a240P240LcCtcTt11B.1.1.1570.000913
ORF3a240P240SCctTct11B.1.1.1600.02381
ORF3a240P240SCctTct11B.1.1.1810.004545
ORF3a240P240SCctTct11B.1.1.1890.001513
ORF3a240P240SCctTct11B.1.1.2100.005714
ORF3a240P240SCctTct11B.1.1.2210.010101
ORF3a240P240TCctAct11B.1.1.2320.001815
ORF3a240P240LcCtcTt11B.1.1.2360.006897
ORF3a240P240LcCtcTt11B.1.1.2580.003257
ORF3a240P240SCctTct11B.1.1.2580.003257
ORF3a240P240SCctTct11B.1.1.2650.003155
ORF3a240P240LcCtcTt11B.1.1.2690.001353
ORF3a240P240LcCtcTt11B.1.1.2770.000759
ORF3a240P240SCctTct11B.1.1.2790.001121
ORF3a240P240FCCtTTt11B.1.1.280.000311
ORF3a240P240TCctAct11B.1.1.280.000311
ORF3a240P240LcCtcTt11B.1.1.2800.003086
ORF3a240P240SCctTct11B.1.1.2970.002237
ORF3a240P240LcCtcTt11B.1.1.3020.002075
ORF3a240P240SCctTct11B.1.1.3050.003861
ORF3a240P240delCCT---11B.1.1.3060.000438
ORF3a240P240DCCtGAt11B.1.1.3060.000438
ORF3a240P240delCCT---11B.1.1.3110.000358
ORF3a240P240LcCtcTt11B.1.1.3150.008475
ORF3a240P240LcCtcTt11B.1.1.3170.000412
ORF3a240P240LcCtcTt11B.1.1.3180.000302
ORF3a240P240HcCtcAt11B.1.1.3290.003846
ORF3a240P240delCCT---11B.1.1.330.000421
ORF3a240P240QcCTcAA11B.1.1.330.000421
ORF3a240P240SCctTct11B.1.1.3310.011628
ORF3a240P240SCctTct11B.1.1.3350.012987
ORF3a240P240LcCtcTt11B.1.1.3400.045455
ORF3a240P240SCctTct11B.1.1.3480.000796
ORF3a240P240LcCtcTt11B.1.1.3520.03125
ORF3a240P240SCctTct11B.1.1.3540.004386
ORF3a240P240LcCtcTt11B.1.1.370.000193
ORF3a240P240SCctTct11B.1.1.3850.004464
ORF3a240P240SCctTct11B.1.1.3970.002252
ORF3a240P240LcCtcTt11B.1.1.4060.006494
ORF3a240P240LcCtcTt11B.1.1.4090.002833
ORF3a240P240SCctTct11B.1.1.4090.002833
ORF3a240P240SCctTct11B.1.1.4290.004608
ORF3a240P240PccTccC11B.1.1.4320.001266
ORF3a240P240LcCtcTt11B.1.1.4480.002033
ORF3a240P240SCctTct11B.1.1.4860.001577
ORF3a240P240SCctTct11B.1.1.500.000679
ORF3a240P240SCctTct11B.1.1.5070.008696
ORF3a240P240TCctAct11B.1.1.5190.00004
ORF3a240P240HcCtcAt11B.1.1.5190.00004
ORF3a240P240ACctGct11B.1.1.5210.005348
ORF3a240P240SCctTct11B.1.1.5210.005348
ORF3a240P240LcCtcTt11B.1.1.5210.005348
ORF3a240P240SCctTct11B.1.1.5250.005464
ORF3a240P240SCctTct11B.1.1.5260.003546
ORF3a240P240LcCtcTt11B.1.1.5260.003546
ORF3a240P240SCctTct11B.1.1.5280.004808
ORF3a240P240SCctTct11B.1.1.700.000341
ORF3a240P240LcCtcTt11B.1.110.20.166667
ORF3a240P240LcCtcTt11B.1.1180.006711
ORF3a240P240LcCtcTt11B.1.1190.010526
ORF3a240P240LcCtcTt11B.1.1390.000733
ORF3a240P240RcCtcGt11B.1.1470.000756
ORF3a240P240SCctTct11B.1.1470.000756
ORF3a240P240SCctTct11B.1.160.100.008065
ORF3a240P240TCctAct11B.1.160.90.007194
ORF3a240P240delCCT---11B.1.1770.000013
ORF3a240P240LcCtcTt11B.1.177.120.000152
ORF3a240P240PccTccA11B.1.177.170.000821
ORF3a240P240SCctTct11B.1.177.240.001295
ORF3a240P240SCctTct11B.1.177.320.00135
ORF3a240P240SCctTct11B.1.177.350.000691
ORF3a240P240SCctTct11B.1.177.40.000211
ORF3a240P240SCctTct11B.1.177.440.000519
ORF3a240P240LcCtcTt11B.1.177.440.000519
ORF3a240P240LcCtcTt11B.1.177.50.001242
ORF3a240P240SCctTct11B.1.177.520.001757
ORF3a240P240LcCtcTt11B.1.177.600.000218
ORF3a240P240LcCtcTt11B.1.177.620.001192
ORF3a240P240SCctTct11B.1.177.690.001484
ORF3a240P240LcCtcTt11B.1.177.70.000165
ORF3a240P240LcCtcTt11B.1.177.730.000566
ORF3a240P240delCCT---11B.1.177.730.000566
ORF3a240P240SCctTct11B.1.177.820.000477
ORF3a240P240LcCtcTt11B.1.177.820.000477
ORF3a240P240LcCtcTt11B.1.177.860.000183
ORF3a240P240LcCtcTt11B.1.1990.004132
ORF3a240P240SCctTct11B.1.2390.001221
ORF3a240P240LcCtcTt11B.1.2390.001221
ORF3a240P240LcCtcTt11B.1.2400.000216
ORF3a240P240LcCtcTt11B.1.2410.000812
ORF3a240P240PccTccA11B.1.2580.000067
ORF3a240P240SCctTct11B.1.258.140.00098
ORF3a240P240SCctTct11B.1.2640.012346
ORF3a240P240LcCtcTt11B.1.2650.001271
ORF3a240P240LcCtcTt11B.1.2840.013158
ORF3a240P240LcCtcTt11B.1.3010.005917
ORF3a240P240LcCtcTt11B.1.3200.001245
ORF3a240P240LcCtcTt11B.1.3300.028571
ORF3a240P240LcCtcTt11B.1.3350.010309
ORF3a240P240LcCtcTt11B.1.3460.001311
ORF3a240P240TCctAct11B.1.3510.00003
ORF3a240P240PccTccC11B.1.3510.00003
ORF3a240P240RcCtcGt11B.1.3510.00003
ORF3a240P240SCctTct11B.1.351.20.000303
ORF3a240P240SCctTct11B.1.351.30.000876
ORF3a240P240LcCtcTt11B.1.3560.001727
ORF3a240P240LcCtcTt11B.1.36.100.004785
ORF3a240P240LcCtcTt11B.1.36.160.001425
ORF3a240P240LcCtcTt11B.1.36.180.00042
ORF3a240P240LcCtcTt11B.1.36.290.000517
ORF3a240P240SCctTct11B.1.36.350.002604
ORF3a240P240SCctTct11B.1.36.390.002217
ORF3a240P240SCctTct11B.1.36.70.004
ORF3a240P240PccTccA11B.1.36.80.001
ORF3a240P240SCctTct11B.1.36.80.001
ORF3a240P240LcCtcTt11B.1.36.90.003215
ORF3a240P240SCctTct11B.1.362.20.004717
ORF3a240P240LcCtcTt11B.1.3690.000285
ORF3a240P240LcCtcTt11B.1.3710.001122
ORF3a240P240SCctTct11B.1.3750.00082
ORF3a240P240LcCtcTt11B.1.3770.004566
ORF3a240P240SCctTct11B.1.3820.008929
ORF3a240P240LcCtcTt11B.1.3890.001002
ORF3a240P240ACctGct11B.1.4000.000429
ORF3a240P240LcCtcTt11B.1.400.10.015152
ORF3a240P240LcCtcTt11B.1.4080.00369
ORF3a240P240SCctTct11B.1.4080.00369
ORF3a240P240SCctTct11B.1.4110.003704
ORF3a240P240SCctTct11B.1.416.10.001563
ORF3a240P240SCctTct11B.1.4260.001009
ORF3a240P240TCctAct11B.1.4270.00005
ORF3a240P240RcCtcGt11B.1.4290.000024
ORF3a240P240PccTccC11B.1.4290.000024
ORF3a240P240SCctTct11B.1.4510.008197
ORF3a240P240LcCtcTt11B.1.4620.007246
ORF3a240P240LcCtcTt11B.1.466.20.000391
ORF3a240P240LcCtcTt11B.1.4680.005714
ORF3a240P240SCctTct11B.1.4680.005714
ORF3a240P240SCctTct11B.1.4740.001901
ORF3a240P240HcCtcAt11B.1.4970.000315
ORF3a240P240TCcTAcG11B.1.4970.000315
ORF3a240P240delCCT---11B.1.4970.000315
ORF3a240P240PccTccC11B.1.5230.002451
ORF3a240P240SCctTct11B.1.5250.000113
ORF3a240P240LcCtcTt11B.1.5380.008065
ORF3a240P240SCctTct11B.1.5510.00129
ORF3a240P240LcCtcTt11B.1.5610.000397
ORF3a240P240SCctTct11B.1.564.10.001577
ORF3a240P240LcCtcTt11B.1.5650.00081
ORF3a240P240SCctTct11B.1.5650.00081
ORF3a240P240SCctTct11B.1.5680.001111
ORF3a240P240PccTccC11B.1.5760.000907
ORF3a240P240SCctTct11B.1.5770.000687
ORF3a240P240HcCtcAt11B.1.5800.004065
ORF3a240P240SCctTct11B.1.5820.000491
ORF3a240P240PccTccC11B.1.5960.000087
ORF3a240P240LcCtcTt11B.1.5970.00463
ORF3a240P240SCctTct11B.1.6060.006024
ORF3a240P240RcCtcGt11B.1.617.20.000004
ORF3a240P240SCctTct11B.1.6190.000871
ORF3a240P240LcCtcTt11B.1.6200.000946
ORF3a240P240SCctTct11B.1.6200.000946
ORF3a240P240LcCtcTt11B.1.6230.000536
ORF3a240P240PccTccC11B.1.6280.000352
ORF3a240P240SCctTct11B.1.6310.003367
ORF3a240P240PccTccC11B.1.6370.000073
ORF3a240P240SCctTct11B.1.80.001972
ORF3a240P240SCctTct11B.1.930.000934
ORF3a240P240SCctTct11B.280.003279
ORF3a240P240LcCtcTt11B.30.000831
ORF3a240P240SCctTct11B.30.000831
ORF3a240P240LcCtcTt11B.3.10.001658
ORF3a240P240LcCtcTt11B.40.002208
ORF3a240P240LcCtcTt11B.400.000364
ORF3a240P240SCctTct11B.400.000364
ORF3a240P240PccTccC11B.450.003831
ORF3a240P240SCctTct11B.60.00091
ORF3a240P240HcCtcAt11B.6.60.000889
ORF3a240P240LcCtcTt11C.10.002392
ORF3a240P240LcCtcTt11C.1.20.004255
ORF3a240P240LcCtcTt11C.160.00106
ORF3a240P240LcCtcTt11C.230.005814
ORF3a240P240SCctTct11C.350.000774
ORF3a240P240SCctTct11C.360.000911
ORF3a240P240LcCtcTt11C.37.10.002618
ORF3a240P240LcCtcTt11N.30.005814
ORF3a240P240LcCtcTt11N.90.005952
ORF3a240P240LcCtcTt11P.1.10.000318
ORF3a240P240RcCtcGt11P.1.100.000269
ORF3a240P240LcCtcTt11P.1.120.000484
ORF3a240P240SCctTct11P.1.120.000484
ORF3a240P240HcCtcAt11P.1.140.000048
ORF3a240P240SCctTct11P.1.150.000232
ORF3a240P240HcCtcAt11P.1.170.000162
ORF3a240P240PccTccG11P.1.20.001156
ORF3a240P240SCctTct11P.1.60.001946
ORF3a240P240SCctTct11P.30.001595
ORF3a240P240PccTccC11Q.10.000126
ORF3a240P240LcCtcTt11Q.40.000455
ORF3a240P240delCCT---11R.10.00009
ORF3a240P240LcCtcTt11S.10.00495