CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 239 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a239E239DnonsyngaGgaT398938950.97643526107-26109

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a239E239DgaGgaT38953989All0.000745
ORF3a239E239DgaGgaT13661368AY.40.002126
ORF3a239E239DgaGgaT289294B.1.1.70.000259
ORF3a239E239DgaGgaT236240B.1.617.20.000889
ORF3a239E239DgaGgaT236236B.1.160.290.995781
ORF3a239E239DgaGgaT143143AY.98.10.006926
ORF3a239E239DgaGgaT129132B.1.20.001136
ORF3a239E239DgaGgaT119119AY.430.000527
ORF3a239E239DgaGgaT8787AY.540.008295
ORF3a239E239DgaGgaT8282B.1.2650.104193
ORF3a239E239DgaGgaT7373AY.260.002067
ORF3a239E239DgaGgaT5858AY.30.000577
ORF3a239E239DgaGgaT5556B.1.10.000998
ORF3a239E239DgaGgaT4951B.10.000449
ORF3a239E239DgaGgaT4849AY.1030.000298
ORF3a239E239DgaGgaT4747AY.39.10.001862
ORF3a239E239DgaGgaT546AY.50.000103
ORF3a239E239DgaGgaT4545AY.440.000274
ORF3a239E239DgaGgaT4040B.1.5580.182648
ORF3a239E239DgaGgaT3636B.1.2580.002396
ORF3a239E239DgaGgaT3333B.1.438.10.00354
ORF3a239E239DgaGgaT2929B.1.1.2160.025824
ORF3a239E239DgaGgaT2828AY.1050.018006
ORF3a239E239DgaGgaT2627B.1.1770.000342
ORF3a239E239DgaGgaT2727C.370.003134
ORF3a239E239DgaGgaT2626P.10.00041
ORF3a239E239DgaGgaT2425AY.1020.000636
ORF3a239E239DgaGgaT2525AY.330.001669
ORF3a239E239DgaGgaT2424B.1.2210.001705
ORF3a239E239DgaGgaT2121AY.470.000653
ORF3a239E239DgaGgaT1919B.1.110.30.013649
ORF3a239E239DgaGgaT119B.1.5960.000087
ORF3a239E239DgaGgaT1616B.1.5440.096386
ORF3a239E239DgaGgaT1313A.2.50.006487
ORF3a239E239DgaGgaT1313AY.140.001144
ORF3a239E239DgaGgaT1212AY.420.000483
ORF3a239E239DgaGgaT1212B.1.5770.008247
ORF3a239E239DgaGgaT1010B.1.1.5190.000397
ORF3a239E239DgaGgaT1010B.1.5250.001132
ORF3a239E239DgaGgaT99B.1.1.2140.000499
ORF3a239E239DgaGgaT99B.1.360.001313
ORF3a239E239DgaGgaT88AY.200.000311
ORF3a239E239DgaGgaT88B.1.1.3260.014085
ORF3a239E239DgaGgaT88B.1.1.630.003086
ORF3a239E239DgaGgaT88B.1.3510.000238
ORF3a239E239DgaGgaT88B.1.4290.000188
ORF3a239E239DgaGgaT77AY.1060.002344
ORF3a239E239DgaGgaT77AY.290.00011
ORF3a239E239DgaGgaT77AY.530.002013
ORF3a239E239DgaGgaT77AY.740.00081
ORF3a239E239DgaGgaT37AY.750.000168
ORF3a239E239DgaGgaT17AY.90.000068
ORF3a239E239DgaGgaT77B.1.1.2970.01566
ORF3a239E239DgaGgaT77B.1.1600.000218
ORF3a239E239DgaGgaT77B.1.6210.00062
ORF3a239E239DgaGgaT66AY.1000.000276
ORF3a239E239DgaGgaT66AY.270.000388
ORF3a239E239DgaGgaT66AY.390.000148
ORF3a239E239DgaGgaT66AY.460.000624
ORF3a239E239DgaGgaT55AU.10.006329
ORF3a239E239DgaGgaT55AY.370.00158
ORF3a239E239DgaGgaT55AY.4.50.000537
ORF3a239E239DgaGgaT55AY.600.00469
ORF3a239E239DgaGgaT55B.1.36.80.005
ORF3a239E239DgaGgaT55B.1.5260.000118
ORF3a239E239DgaGgaT55P.1.70.001596
ORF3a239E239DgaGgaT55R.10.00045
ORF3a239E239DgaGgaT44AY.1160.001147
ORF3a239E239DgaGgaT44AY.1190.000141
ORF3a239E239DgaGgaT44AY.610.000419
ORF3a239E239DgaGgaT44AY.9.20.000147
ORF3a239E239DgaGgaT44AY.980.000316
ORF3a239E239DgaGgaT44AY.99.20.000369
ORF3a239E239DgaGgaT44B.1.1.40.011905
ORF3a239E239DgaGgaT44B.1.2400.000862
ORF3a239E239DgaGgaT44B.1.4700.005618
ORF3a239E239DgaGgaT44B.1.4990.004202
ORF3a239E239DgaGgaT44C.350.003096
ORF3a239E239DgaGgaT33AY.46.60.000217
ORF3a239E239DgaGgaT33AY.9.10.000251
ORF3a239E239DgaGgaT23AY.920.000575
ORF3a239E239DgaGgaT33B.1.1.1700.003741
ORF3a239E239DgaGgaT33B.1.1.2220.000612
ORF3a239E239DgaGgaT33B.1.1.280.000934
ORF3a239E239DgaGgaT33B.1.1.3060.001315
ORF3a239E239DgaGgaT33B.1.3490.002144
ORF3a239E239DgaGgaT33B.1.4080.01107
ORF3a239E239DgaGgaT33B.1.6090.001438
ORF3a239E239DgaGgaT33B.1.6370.000219
ORF3a239E239DgaGgaT33C.360.002732
ORF3a239E239DgaGgaT33Q.80.000495
ORF3a239E239DgaGgaT22A.270.003311
ORF3a239E239DgaGgaT22AY.1140.000462
ORF3a239E239DgaGgaT22AY.1170.000169
ORF3a239E239DgaGgaT22AY.1180.000125
ORF3a239E239DgaGgaT22AY.120.000632
ORF3a239E239DgaGgaT12AY.16.10.00047
ORF3a239E239DgaGgaT22AY.230.000139
ORF3a239E239DgaGgaT22AY.400.001929
ORF3a239E239DgaGgaT22AY.450.000243
ORF3a239E239DgaGgaT22AY.5.30.000675
ORF3a239E239DgaGgaT22AY.60.000082
ORF3a239E239DgaGgaT22AY.7.20.001119
ORF3a239E239DgaGgaT22B.1.1.3170.000823
ORF3a239E239DgaGgaT22B.1.1.330.000842
ORF3a239E239DgaGgaT22B.1.1.3540.008772
ORF3a239E239DgaGgaT22B.1.1.4090.005666
ORF3a239E239DgaGgaT22B.1.351.20.000605
ORF3a239E239DgaGgaT22B.1.36.310.003503
ORF3a239E239DgaGgaT22B.1.4000.000858
ORF3a239E239DgaGgaT22B.1.416.10.003125
ORF3a239E239DgaGgaT22B.1.5800.00813
ORF3a239E239DgaGgaT12B.1.617.10.000129
ORF3a239E239DgaGgaT12D.20.000075
ORF3a239E239DgaGgaT22P.1.100.000539
ORF3a239E239DgaGgaT22P.1.150.000465
ORF3a239E239DgaGgaT11A.10.000282
ORF3a239E239DgaGgaT11A.250.018182
ORF3a239E239DgaGgaT11AE.40.043478
ORF3a239E239DgaGgaT11AJ.10.045455
ORF3a239E239DgaGgaT11AY.10.000396
ORF3a239E239DgaGgaT11AY.1010.00049
ORF3a239E239DgaGgaT11AY.1080.001103
ORF3a239E239DgaGgaT11AY.110.001339
ORF3a239E239DgaGgaT11AY.1100.000113
ORF3a239E239DgaGgaT11AY.1110.000183
ORF3a239E239DgaGgaT11AY.1130.000142
ORF3a239E239DgaGgaT11AY.1200.000037
ORF3a239E239DgaGgaT11AY.120.20.001285
ORF3a239E239DgaGgaT11AY.120.2.10.000498
ORF3a239E239DgaGgaT11AY.1210.000135
ORF3a239E239DgaGgaT11AY.160.00038
ORF3a239E239DgaGgaT11AY.240.000431
ORF3a239E239DgaGgaT11AY.34.10.00051
ORF3a239E239DgaGgaT11AY.350.000233
ORF3a239E239DgaGgaT11AY.360.000148
ORF3a239E239DgaGgaT11AY.380.000499
ORF3a239E239DgaGgaT11AY.4.20.000022
ORF3a239E239DgaGgaT11AY.410.000294
ORF3a239E239DgaGgaT11AY.46.20.000635
ORF3a239E239DgaGgaT11AY.46.30.000934
ORF3a239E239DgaGgaT11AY.46.40.000165
ORF3a239E239DgaGgaT11AY.5.40.000277
ORF3a239E239DgaGgaT11AY.550.000917
ORF3a239E239DgaGgaT11AY.590.00053
ORF3a239E239DgaGgaT11AY.620.000436
ORF3a239E239DgaGgaT11AY.700.000209
ORF3a239E239DgaGgaT11AY.730.000665
ORF3a239E239DgaGgaT11AY.75.10.00018
ORF3a239E239DgaGgaT11AY.880.000884
ORF3a239E239DgaGgaT11AY.960.002075
ORF3a239E239DgaGgaT11B0.000128
ORF3a239E239DgaGgaT11B.1.1.10.000327
ORF3a239E239DgaGgaT11B.1.1.1010.01
ORF3a239E239DgaGgaT11B.1.1.250.000569
ORF3a239E239DgaGgaT11B.1.1.3480.000796
ORF3a239E239DgaGgaT11B.1.1.4130.006897
ORF3a239E239DgaGgaT11B.1.1.4860.001577
ORF3a239E239DgaGgaT11B.1.1260.001276
ORF3a239E239DgaGgaT11B.1.160.160.000929
ORF3a239E239DgaGgaT11B.1.1660.008475
ORF3a239E239DgaGgaT11B.1.177.140.006098
ORF3a239E239DgaGgaT11B.1.177.150.000631
ORF3a239E239DgaGgaT11B.1.177.730.000566
ORF3a239E239DgaGgaT11B.1.177.770.000726
ORF3a239E239DgaGgaT11B.1.2100.002132
ORF3a239E239DgaGgaT11B.1.220.001318
ORF3a239E239DgaGgaT11B.1.2220.001692
ORF3a239E239DgaGgaT11B.1.2360.002053
ORF3a239E239DgaGgaT11B.1.258.170.000104
ORF3a239E239DgaGgaT11B.1.350.008475
ORF3a239E239DgaGgaT11B.1.36.360.000602
ORF3a239E239DgaGgaT11B.1.36.370.002778
ORF3a239E239DgaGgaT11B.1.4160.001269
ORF3a239E239DgaGgaT11B.1.4250.002994
ORF3a239E239DgaGgaT11B.1.4270.00005
ORF3a239E239DgaGgaT11B.1.4280.00102
ORF3a239E239DgaGgaT11B.1.4360.001029
ORF3a239E239DgaGgaT11B.1.4620.007246
ORF3a239E239DgaGgaT11B.1.466.20.000391
ORF3a239E239DgaGgaT11B.1.4960.125
ORF3a239E239DgaGgaT11B.1.5330.009615
ORF3a239E239DgaGgaT11B.1.5610.000397
ORF3a239E239DgaGgaT11B.1.5760.000907
ORF3a239E239DgaGgaT11B.1.5820.000491
ORF3a239E239DgaGgaT11B.1.6300.005236
ORF3a239E239DgaGgaT11B.150.017544
ORF3a239E239DgaGgaT11B.230.002924
ORF3a239E239DgaGgaT11B.400.000364
ORF3a239E239DgaGgaT11B.550.00295
ORF3a239E239DgaGgaT11B.6.20.0625
ORF3a239E239DgaGgaT11C.37.10.002618
ORF3a239E239DgaGgaT11N.50.001767
ORF3a239E239DgaGgaT11N.90.005952
ORF3a239E239DgaGgaT11P.1.160.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.