CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 239 & Codon = Aag

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a239E239KnonsynGagAag335335126107-26109

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a239E239KGagAag335335All0.000064
ORF3a239E239KGagAag151151AY.440.000919
ORF3a239E239KGagAag9797B.1.177.70.015991
ORF3a239E239KGagAag1717B.1.1.70.000015
ORF3a239E239KGagAag1212AY.40.000019
ORF3a239E239KGagAag77B.1.1.3480.005573
ORF3a239E239KGagAag66A.30.012579
ORF3a239E239KGagAag66B.1.6370.000438
ORF3a239E239KGagAag44AY.1020.000106
ORF3a239E239KGagAag44B.10.000037
ORF3a239E239KGagAag33AY.1200.000112
ORF3a239E239KGagAag33AY.430.000013
ORF3a239E239KGagAag33B.1.617.20.000011
ORF3a239E239KGagAag220.111111
ORF3a239E239KGagAag22AY.1210.000271
ORF3a239E239KGagAag22AY.30.00002
ORF3a239E239KGagAag22AY.90.000135
ORF3a239E239KGagAag22B.1.5950.000522
ORF3a239E239KGagAag11AD.20.000219
ORF3a239E239KGagAag11AY.1030.000006
ORF3a239E239KGagAag11AY.250.000006
ORF3a239E239KGagAag11AY.390.000025
ORF3a239E239KGagAag11B.1.1.1980.001468
ORF3a239E239KGagAag11B.1.1.250.000569
ORF3a239E239KGagAag11B.1.1770.000013
ORF3a239E239KGagAag11B.1.4730.019231
ORF3a239E239KGagAag11B.1.4970.000315
ORF3a239E239KGagAag11B.1.840.020833
ORF3a239E239KGagAag11P.20.000187
ORF3a239E239KGagAag11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.