CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 232

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a232I232IsynatCatT9398870.94462226086-26088
ORF3a232I232IsynatCatA939520.055378126086-26088
ORF3a232I232VnonsynAtcGtc554554126086-26088
ORF3a232I232TnonsynaTcaCc355355126086-26088
ORF3a232I232FnonsynAtcTtc201201126086-26088
ORF3a232I232MnonsynatCatG9494126086-26088
ORF3a232I232deldelATC---2222126086-26088
ORF3a232I232LnonsynAtcCtc1010126086-26088
ORF3a232I232SnonsynaTcaGc640.66666726086-26088
ORF3a232I232SnonsynaTCaGT620.33333326086-26088
ORF3a232I232NnonsynaTcaAc22126086-26088
ORF3a232I232KnonsynaTCaAA11126086-26088
ORF3a232I232del2delATc--c11126086-26088
ORF3a232I232CnonsynATcTGc11126086-26088
ORF3a232I232PnonsynATcCCc11126086-26088
ORF3a232I232RnonsynaTCaGA11126086-26088

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a232I232IatCatT887939All0.00017
ORF3a232I232IatCatA52939All0.00001
ORF3a232I232VAtcGtc554554All0.000106
ORF3a232I232IatCatT512512A.50.984615
ORF3a232I232TaTcaCc355355All0.000068
ORF3a232I232TaTcaCc225225AY.40.00035
ORF3a232I232FAtcTtc201201All0.000038
ORF3a232I232VAtcGtc144144AY.440.000876
ORF3a232I232VAtcGtc9999B.1.1.70.000089
ORF3a232I232MatCatG9494All0.000018
ORF3a232I232FAtcTtc8888B.1.1600.002745
ORF3a232I232MatCatG8787AY.90.005881
ORF3a232I232VAtcGtc8383AY.40.000129
ORF3a232I232IatCatT7173B.1.1.70.000064
ORF3a232I232IatCatA273B.1.1.70.000002
ORF3a232I232IatCatA3244AY.440.000195
ORF3a232I232IatCatT1244AY.440.000073
ORF3a232I232IatCatT4444AY.98.10.002131
ORF3a232I232IatCatT3434B.1.20.000299
ORF3a232I232VAtcGtc3232B.1.1.5190.001271
ORF3a232I232VAtcGtc2525B.1.1770.000329
ORF3a232I232IatCatT2424AY.250.000144
ORF3a232I232IatCatT2323B.10.000211
ORF3a232I232VAtcGtc2323B.1.617.20.000087
ORF3a232I232delATC---2222All0.000004
ORF3a232I232IatCatT2222B0.002812
ORF3a232I232VAtcGtc1717AY.540.001621
ORF3a232I232IatCatT1416B.1.617.20.000053
ORF3a232I232IatCatA216B.1.617.20.000008
ORF3a232I232IatCatT1616P.10.000252
ORF3a232I232FAtcTtc1515AY.40.000023
ORF3a232I232IatCatT1315AY.40.00002
ORF3a232I232IatCatA215AY.40.000003
ORF3a232I232TaTcaCc1515B.1.1.70.000013
ORF3a232I232IatCatT1515B.1.5810.141509
ORF3a232I232TaTcaCc1414AY.30.000139
ORF3a232I232FAtcTtc1414B.10.000128
ORF3a232I232IatCatT1212AY.1030.000075
ORF3a232I232FAtcTtc1212AY.46.60.000866
ORF3a232I232TaTcaCc1212B.1.2580.000799
ORF3a232I232LAtcCtc1010All0.000002
ORF3a232I232VAtcGtc1010AY.1020.000265
ORF3a232I232TaTcaCc1010B.1.177.560.006676
ORF3a232I232VAtcGtc99AY.1030.000056
ORF3a232I232VAtcGtc99AY.250.000054
ORF3a232I232FAtcTtc99AY.430.00004
ORF3a232I232FAtcTtc99B.1.1770.000119
ORF3a232I232IatCatT99B.1.2210.000639
ORF3a232I232VAtcGtc88AY.30.00008
ORF3a232I232FAtcTtc88P.10.000126
ORF3a232I232TaTcaCc77AY.1110.001282
ORF3a232I232VAtcGtc77AY.430.000031
ORF3a232I232VAtcGtc77B.1.5750.002124
ORF3a232I232TaTcaCc77B.1.617.20.000026
ORF3a232I232FAtcTtc77B.1.617.20.000026
ORF3a232I232SaTcaGc46All0.000001
ORF3a232I232SaTCaGT26All0
ORF3a232I232IatCatT56AY.420.000201
ORF3a232I232IatCatA16AY.420.00004
ORF3a232I232IatCatT66AY.930.001638
ORF3a232I232VAtcGtc66B.10.000055
ORF3a232I232TaTcaCc66B.10.000055
ORF3a232I232FAtcTtc66C.160.006363
ORF3a232I232VAtcGtc55AY.140.00044
ORF3a232I232FAtcTtc55AY.250.00003
ORF3a232I232FAtcTtc55AY.4.50.000537
ORF3a232I232TaTcaCc55AY.430.000022
ORF3a232I232TaTcaCc55AY.440.00003
ORF3a232I232TaTcaCc55AY.50.000103
ORF3a232I232LAtcCtc55B.1.1.70.000004
ORF3a232I232delATC---55B.1.1.70.000004
ORF3a232I232VAtcGtc55B.1.5960.000436
ORF3a232I232VAtcGtc44A.2.5.30.041237
ORF3a232I232TaTcaCc44AY.1020.000106
ORF3a232I232VAtcGtc44AY.390.000099
ORF3a232I232IatCatT34AY.390.000074
ORF3a232I232IatCatA14AY.390.000025
ORF3a232I232VAtcGtc44AY.470.000124
ORF3a232I232VAtcGtc44AY.730.002661
ORF3a232I232IatCatT44B.1.10.000073
ORF3a232I232TaTcaCc44B.1.10.000073
ORF3a232I232VAtcGtc44B.1.20.000035
ORF3a232I232IatCatT44B.1.4290.000094
ORF3a232I232delATC---44B.1.5250.000453
ORF3a232I232IatCatT44C.36.30.002269
ORF3a232I232IatCatT33A0.001161
ORF3a232I232TaTcaCc33AY.1030.000019
ORF3a232I232FAtcTtc33AY.160.001139
ORF3a232I232IatCatT33AY.30.00003
ORF3a232I232IatCatT33AY.430.000013
ORF3a232I232delATC---33AY.430.000013
ORF3a232I232VAtcGtc33AY.46.60.000217
ORF3a232I232VAtcGtc33B.1.10.000054
ORF3a232I232TaTcaCc33B.1.1.2220.000612
ORF3a232I232IatCatT33B.1.1770.00004
ORF3a232I232VAtcGtc33B.1.5260.000071
ORF3a232I232IatCatT23B.1.5960.000174
ORF3a232I232IatCatA13B.1.5960.000087
ORF3a232I232TaTcaCc33P.10.000047
ORF3a232I232delATC---220.111111
ORF3a232I232TaTcaCc220.111111
ORF3a232I232SaTCaGT220.111111
ORF3a232I232NaTcaAc22All0
ORF3a232I232VAtcGtc22AY.1170.000169
ORF3a232I232TaTcaCc22AY.120.2.10.000997
ORF3a232I232IatCatT22AY.200.000078
ORF3a232I232TaTcaCc22AY.250.000012
ORF3a232I232VAtcGtc22AY.4.20.000043
ORF3a232I232FAtcTtc22AY.420.00008
ORF3a232I232LAtcCtc22AY.440.000012
ORF3a232I232IatCatA22AY.470.000062
ORF3a232I232VAtcGtc22AY.50.000041
ORF3a232I232FAtcTtc22AY.610.00021
ORF3a232I232TaTcaCc22AY.9.10.000167
ORF3a232I232TaTcaCc22B0.000256
ORF3a232I232TaTcaCc22B.1.1.3390.021053
ORF3a232I232IatCatT22B.1.1.3820.071429
ORF3a232I232IatCatT12B.1.1.5190.00004
ORF3a232I232IatCatA12B.1.1.5190.00004
ORF3a232I232FAtcTtc22B.1.1.70.000002
ORF3a232I232TaTcaCc22B.1.1770.000026
ORF3a232I232MatCatG22B.1.20.000018
ORF3a232I232VAtcGtc22B.1.2210.000142
ORF3a232I232VAtcGtc22B.1.2390.002442
ORF3a232I232MatCatG22B.1.2430.000139
ORF3a232I232IatCatT22B.1.2580.000133
ORF3a232I232IatCatT22B.1.4990.002101
ORF3a232I232IatCatT22B.1.5260.000047
ORF3a232I232VAtcGtc22R.10.00018
ORF3a232I232IatCatT11A.20.000662
ORF3a232I232RaTCaGA11All0
ORF3a232I232KaTCaAA11All0
ORF3a232I232del2ATc--c11All0
ORF3a232I232PATcCCc11All0
ORF3a232I232CATcTGc11All0
ORF3a232I232VAtcGtc11AY.10.000396
ORF3a232I232VAtcGtc11AY.1000.000046
ORF3a232I232IatCatA11AY.1020.000027
ORF3a232I232IatCatA11AY.1050.000643
ORF3a232I232VAtcGtc11AY.1060.000335
ORF3a232I232TaTcaCc11AY.1060.000335
ORF3a232I232IatCatA11AY.1110.000183
ORF3a232I232delATC---11AY.1200.000037
ORF3a232I232VAtcGtc11AY.190.00114
ORF3a232I232VAtcGtc11AY.200.000039
ORF3a232I232FAtcTtc11AY.200.000039
ORF3a232I232IatCatA11AY.220.002092
ORF3a232I232SaTcaGc11AY.230.00007
ORF3a232I232VAtcGtc11AY.230.00007
ORF3a232I232IatCatT11AY.23.10.000417
ORF3a232I232FAtcTtc11AY.260.000028
ORF3a232I232TaTcaCc11AY.290.000016
ORF3a232I232IatCatT11AY.290.000016
ORF3a232I232VAtcGtc11AY.330.000067
ORF3a232I232VAtcGtc11AY.340.000097
ORF3a232I232FAtcTtc11AY.340.000097
ORF3a232I232TaTcaCc11AY.390.000025
ORF3a232I232IatCatA11AY.4.20.000022
ORF3a232I232SaTcaGc11AY.4.20.000022
ORF3a232I232VAtcGtc11AY.410.000294
ORF3a232I232MatCatG11AY.430.000004
ORF3a232I232FAtcTtc11AY.440.000006
ORF3a232I232VAtcGtc11AY.450.000122
ORF3a232I232MatCatG11AY.460.000104
ORF3a232I232VAtcGtc11AY.46.20.000635
ORF3a232I232VAtcGtc11AY.46.40.000165
ORF3a232I232VAtcGtc11AY.46.50.000198
ORF3a232I232IatCatT11AY.610.000105
ORF3a232I232IatCatT11AY.660.00107
ORF3a232I232CATcTGc11AY.670.000464
ORF3a232I232delATC---11AY.680.000274
ORF3a232I232del2ATc--c11AY.760.004831
ORF3a232I232FAtcTtc11AY.820.001357
ORF3a232I232FAtcTtc11AY.9.10.000084
ORF3a232I232IatCatT11AY.9.20.000037
ORF3a232I232VAtcGtc11AY.900.000684
ORF3a232I232RaTCaGA11AY.990.001049
ORF3a232I232IatCatT11AY.990.001049
ORF3a232I232SaTcaGc11AY.990.001049
ORF3a232I232IatCatT11AY.99.20.000092
ORF3a232I232delATC---11B.10.000009
ORF3a232I232SaTcaGc11B.10.000009
ORF3a232I232IatCatT11B.1.1.2220.000204
ORF3a232I232VAtcGtc11B.1.1.2280.003049
ORF3a232I232TaTcaCc11B.1.1.2420.043478
ORF3a232I232VAtcGtc11B.1.1.280.000311
ORF3a232I232delATC---11B.1.1.3110.000358
ORF3a232I232IatCatA11B.1.1.3180.000302
ORF3a232I232VAtcGtc11B.1.1.330.000421
ORF3a232I232TaTcaCc11B.1.1.4090.002833
ORF3a232I232IatCatT11B.1.1.500.000679
ORF3a232I232NaTcaAc11B.1.1.70.000001
ORF3a232I232VAtcGtc11B.1.110.30.000718
ORF3a232I232KaTCaAA11B.1.1180.006711
ORF3a232I232FAtcTtc11B.1.1470.000756
ORF3a232I232delATC---11B.1.1770.000013
ORF3a232I232FAtcTtc11B.1.177.210.000076
ORF3a232I232FAtcTtc11B.1.177.440.000519
ORF3a232I232delATC---11B.1.177.730.000566
ORF3a232I232TaTcaCc11B.1.20.000009
ORF3a232I232FAtcTtc11B.1.20.000009
ORF3a232I232delATC---11B.1.20.000009
ORF3a232I232FAtcTtc11B.1.2130.014925
ORF3a232I232LAtcCtc11B.1.2210.000071
ORF3a232I232FAtcTtc11B.1.2580.000067
ORF3a232I232LAtcCtc11B.1.2580.000067
ORF3a232I232TaTcaCc11B.1.258.160.001637
ORF3a232I232TaTcaCc11B.1.258.170.000104
ORF3a232I232VAtcGtc11B.1.3510.00003
ORF3a232I232TaTcaCc11B.1.3510.00003
ORF3a232I232IatCatA11B.1.360.000146
ORF3a232I232IatCatT11B.1.36.180.00042
ORF3a232I232IatCatT11B.1.4270.00005
ORF3a232I232PATcCCc11B.1.4970.000315
ORF3a232I232IatCatT11B.1.5250.000113
ORF3a232I232IatCatT11B.1.5510.00129
ORF3a232I232NaTcaAc11B.1.5610.000397
ORF3a232I232IatCatA11B.1.5770.000687
ORF3a232I232IatCatT11B.1.5950.000261
ORF3a232I232VAtcGtc11B.1.6000.005848
ORF3a232I232FAtcTtc11B.1.6090.000479
ORF3a232I232MatCatG11B.1.617.20.000004
ORF3a232I232TaTcaCc11B.1.6200.000946
ORF3a232I232FAtcTtc11B.1.6270.00202
ORF3a232I232TaTcaCc11C.370.000116
ORF3a232I232VAtcGtc11C.370.000116
ORF3a232I232TaTcaCc11D.20.000075
ORF3a232I232VAtcGtc11P.10.000016
ORF3a232I232LAtcCtc11P.1.140.000048
ORF3a232I232TaTcaCc11P.1.170.000162
ORF3a232I232VAtcGtc11Q.40.000455
ORF3a232I232VAtcGtc11Q.80.000165
ORF3a232I232delATC---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.