CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 229 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	229	T229T		syn	acC	acT	3674	2541	0.691617	26077-26079

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	229	T229T	acC	acT	2541	3674	All	0.000486
ORF3a	229	T229T	acC	acT	1143	1143	AY.26	0.032359
ORF3a	229	T229T	acC	acT	251	289	AY.4	0.000391
ORF3a	229	T229T	acC	acT	245	259	B.1.1.7	0.000219
ORF3a	229	T229T	acC	acT	51	240	B.1.617.2	0.000192
ORF3a	229	T229T	acC	acT	125	130	AY.103	0.000776
ORF3a	229	T229T	acC	acT	115	117	B.1.2	0.001013
ORF3a	229	T229T	acC	acT	74	74	B.1.524	0.104079
ORF3a	229	T229T	acC	acT	65	68	P.1	0.001024
ORF3a	229	T229T	acC	acT	53	53	AY.29.1	0.011687
ORF3a	229	T229T	acC	acT	32	47	AY.43	0.000142
ORF3a	229	T229T	acC	acT	42	42	AY.110	0.004733
ORF3a	229	T229T	acC	acT	23	24	B.1.1	0.000417
ORF3a	229	T229T	acC	acT	20	22	AY.20	0.000777
ORF3a	229	T229T	acC	acT	21	21	B.1.177	0.000277
ORF3a	229	T229T	acC	acT	14	20	B.1	0.000128
ORF3a	229	T229T	acC	acT	17	19	AY.75	0.000952
ORF3a	229	T229T	acC	acT	13	18	AY.44	0.000079
ORF3a	229	T229T	acC	acT	18	18	B.1.1.70	0.006139
ORF3a	229	T229T	acC	acT	1	18	B.1.243	0.00007
ORF3a	229	T229T	acC	acT	14	14	B.1.36	0.002043
ORF3a	229	T229T	acC	acT	13	14	B.1.429	0.000306
ORF3a	229	T229T	acC	acT	14	14	B.6.6	0.012444
ORF3a	229	T229T	acC	acT	7	12	AY.102	0.000186
ORF3a	229	T229T	acC	acT	11	11	AY.109	0.008136
ORF3a	229	T229T	acC	acT	3	11	AY.3	0.00003
ORF3a	229	T229T	acC	acT	3	11	AY.5	0.000062
ORF3a	229	T229T	acC	acT	1	10	AY.120	0.000037
ORF3a	229	T229T	acC	acT	8	9	AY.116	0.002294
ORF3a	229	T229T	acC	acT	9	9	AY.119	0.000318
ORF3a	229	T229T	acC	acT	9	9	AY.25	0.000054
ORF3a	229	T229T	acC	acT	4	8	AY.39	0.000099
ORF3a	229	T229T	acC	acT	2	8	AY.75.1	0.000361
ORF3a	229	T229T	acC	acT	8	8	B.1.221	0.000568
ORF3a	229	T229T	acC	acT	2	6	AY.61	0.00021
ORF3a	229	T229T	acC	acT	4	6	AY.9.2	0.000147
ORF3a	229	T229T	acC	acT	6	6	B.1.177.10	0.005268
ORF3a	229	T229T	acC	acT	6	6	P.1.14	0.000287
ORF3a	229	T229T	acC	acT	4	5	AY.113	0.00057
ORF3a	229	T229T	acC	acT	5	5	AY.98	0.000395
ORF3a	229	T229T	acC	acT	2	5	B.1.621	0.000177
ORF3a	229	T229T	acC	acT	2	4		0.111111
ORF3a	229	T229T	acC	acT	4	4	AY.1	0.001583
ORF3a	229	T229T	acC	acT	4	4	B.1.160	0.000125
ORF3a	229	T229T	acC	acT	4	4	B.1.575	0.001214
ORF3a	229	T229T	acC	acT	4	4	B.1.88.1	0.019231
ORF3a	229	T229T	acC	acT	1	3	B.1.351	0.00003
ORF3a	229	T229T	acC	acT	1	3	B.1.497	0.000315
ORF3a	229	T229T	acC	acT	3	3	R.1	0.00027
ORF3a	229	T229T	acC	acT	2	2	AY.29	0.000032
ORF3a	229	T229T	acC	acT	2	2	AY.36	0.000296
ORF3a	229	T229T	acC	acT	1	2	AY.4.2	0.000022
ORF3a	229	T229T	acC	acT	2	2	AY.46.2	0.001271
ORF3a	229	T229T	acC	acT	2	2	AY.47	0.000062
ORF3a	229	T229T	acC	acT	2	2	AY.62	0.000871
ORF3a	229	T229T	acC	acT	1	2	B	0.000128
ORF3a	229	T229T	acC	acT	2	2	B.1.1.317	0.000823
ORF3a	229	T229T	acC	acT	2	2	B.1.1.372	0.001377
ORF3a	229	T229T	acC	acT	2	2	B.1.1.486	0.003155
ORF3a	229	T229T	acC	acT	2	2	B.1.258.17	0.000208
ORF3a	229	T229T	acC	acT	2	2	B.1.36.22	0.002415
ORF3a	229	T229T	acC	acT	2	2	B.1.36.29	0.001035
ORF3a	229	T229T	acC	acT	2	2	B.1.36.8	0.002
ORF3a	229	T229T	acC	acT	2	2	B.1.470	0.002809
ORF3a	229	T229T	acC	acT	2	2	B.1.525	0.000226
ORF3a	229	T229T	acC	acT	2	2	B.1.582	0.000981
ORF3a	229	T229T	acC	acT	2	2	D.2	0.00015
ORF3a	229	T229T	acC	acT	1	1	AT.1	0.005128
ORF3a	229	T229T	acC	acT	1	1	AY.100	0.000046
ORF3a	229	T229T	acC	acT	1	1	AY.114	0.000231
ORF3a	229	T229T	acC	acT	1	1	AY.118	0.000063
ORF3a	229	T229T	acC	acT	1	1	AY.23.1	0.000417
ORF3a	229	T229T	acC	acT	1	1	AY.30	0.000396
ORF3a	229	T229T	acC	acT	1	1	AY.38	0.000499
ORF3a	229	T229T	acC	acT	1	1	AY.4.2.1	0.000149
ORF3a	229	T229T	acC	acT	1	1	AY.41	0.000294
ORF3a	229	T229T	acC	acT	1	1	AY.46	0.000104
ORF3a	229	T229T	acC	acT	1	1	AY.6	0.000041
ORF3a	229	T229T	acC	acT	1	1	AY.67	0.000464
ORF3a	229	T229T	acC	acT	1	1	AY.68	0.000274
ORF3a	229	T229T	acC	acT	1	1	AY.71	0.000475
ORF3a	229	T229T	acC	acT	1	1	B.1.1.222	0.000204
ORF3a	229	T229T	acC	acT	1	1	B.1.1.316	0.000925
ORF3a	229	T229T	acC	acT	1	1	B.1.1.37	0.000193
ORF3a	229	T229T	acC	acT	1	1	B.1.1.519	0.00004
ORF3a	229	T229T	acC	acT	1	1	B.1.195	0.005025
ORF3a	229	T229T	acC	acT	1	1	B.1.36.10	0.004785
ORF3a	229	T229T	acC	acT	1	1	B.1.36.17	0.000494
ORF3a	229	T229T	acC	acT	1	1	B.1.526	0.000024
ORF3a	229	T229T	acC	acT	1	1	B.1.577	0.000687
ORF3a	229	T229T	acC	acT	1	1	B.1.617.1	0.000129
ORF3a	229	T229T	acC	acT	1	1	C.37	0.000116
ORF3a	229	T229T	acC	acT	1	1	P.1.12	0.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.