CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 229 | T229I | nonsyn | aCc | aTc | 3955 | 3955 | 1 | 26077-26079 | |
ORF3a | 229 | T229T | syn | acC | acT | 3674 | 2541 | 0.691617 | 26077-26079 | |
ORF3a | 229 | T229T | syn | acC | acA | 3674 | 1101 | 0.299673 | 26077-26079 | |
ORF3a | 229 | T229T | syn | acC | acG | 3674 | 32 | 0.00870985 | 26077-26079 | |
ORF3a | 229 | T229S | nonsyn | Acc | Tcc | 553 | 469 | 0.848101 | 26077-26079 | |
ORF3a | 229 | T229S | nonsyn | aCc | aGc | 553 | 84 | 0.151899 | 26077-26079 | |
ORF3a | 229 | T229N | nonsyn | aCc | aAc | 295 | 295 | 1 | 26077-26079 | |
ORF3a | 229 | T229A | nonsyn | Acc | Gcc | 178 | 177 | 0.994382 | 26077-26079 | |
ORF3a | 229 | T229A | nonsyn | AcC | GcT | 178 | 1 | 0.00561798 | 26077-26079 | |
ORF3a | 229 | T229del | del | ACC | --- | 24 | 24 | 1 | 26077-26079 | |
ORF3a | 229 | T229P | nonsyn | Acc | Ccc | 4 | 4 | 1 | 26077-26079 | |
ORF3a | 229 | T229del1 | del | aCc | a-c | 2 | 1 | 0.5 | 26077-26079 | |
ORF3a | 229 | T229del1 | del | Acc | -cc | 2 | 1 | 0.5 | 26077-26079 | |
ORF3a | 229 | T229G | nonsyn | ACC | GGT | 1 | 1 | 1 | 26077-26079 | |
ORF3a | 229 | T229L | nonsyn | ACC | TTG | 1 | 1 | 1 | 26077-26079 | |
ORF3a | 229 | T229H | nonsyn | ACc | CAc | 1 | 1 | 1 | 26077-26079 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 229 | T229I | aCc | aTc | 3955 | 3955 | All | 0.000756 |
ORF3a | 229 | T229T | acC | acT | 2541 | 3674 | All | 0.000486 |
ORF3a | 229 | T229T | acC | acA | 1101 | 3674 | All | 0.000211 |
ORF3a | 229 | T229T | acC | acG | 32 | 3674 | All | 0.000006 |
ORF3a | 229 | T229T | acC | acT | 1143 | 1143 | AY.26 | 0.032359 |
ORF3a | 229 | T229I | aCc | aTc | 953 | 953 | B.1.1.7 | 0.000853 |
ORF3a | 229 | T229T | acC | acA | 742 | 742 | AY.58 | 0.673321 |
ORF3a | 229 | T229S | Acc | Tcc | 469 | 553 | All | 0.00009 |
ORF3a | 229 | T229S | aCc | aGc | 84 | 553 | All | 0.000016 |
ORF3a | 229 | T229I | aCc | aTc | 479 | 479 | AY.4 | 0.000746 |
ORF3a | 229 | T229S | Acc | Tcc | 445 | 447 | AY.4 | 0.000693 |
ORF3a | 229 | T229S | aCc | aGc | 2 | 447 | AY.4 | 0.000003 |
ORF3a | 229 | T229N | aCc | aAc | 295 | 295 | All | 0.000056 |
ORF3a | 229 | T229T | acC | acT | 251 | 289 | AY.4 | 0.000391 |
ORF3a | 229 | T229T | acC | acA | 37 | 289 | AY.4 | 0.000058 |
ORF3a | 229 | T229T | acC | acG | 1 | 289 | AY.4 | 0.000002 |
ORF3a | 229 | T229T | acC | acT | 245 | 259 | B.1.1.7 | 0.000219 |
ORF3a | 229 | T229T | acC | acA | 13 | 259 | B.1.1.7 | 0.000012 |
ORF3a | 229 | T229T | acC | acG | 1 | 259 | B.1.1.7 | 0.000001 |
ORF3a | 229 | T229T | acC | acA | 189 | 240 | B.1.617.2 | 0.000712 |
ORF3a | 229 | T229T | acC | acT | 51 | 240 | B.1.617.2 | 0.000192 |
ORF3a | 229 | T229I | aCc | aTc | 205 | 205 | AY.103 | 0.001273 |
ORF3a | 229 | T229A | Acc | Gcc | 177 | 178 | All | 0.000034 |
ORF3a | 229 | T229A | AcC | GcT | 1 | 178 | All | 0 |
ORF3a | 229 | T229I | aCc | aTc | 176 | 176 | AY.25 | 0.001059 |
ORF3a | 229 | T229I | aCc | aTc | 163 | 163 | AY.44 | 0.000992 |
ORF3a | 229 | T229N | aCc | aAc | 151 | 151 | C.1.2 | 0.642553 |
ORF3a | 229 | T229T | acC | acT | 125 | 130 | AY.103 | 0.000776 |
ORF3a | 229 | T229T | acC | acA | 3 | 130 | AY.103 | 0.000019 |
ORF3a | 229 | T229T | acC | acG | 2 | 130 | AY.103 | 0.000012 |
ORF3a | 229 | T229T | acC | acT | 115 | 117 | B.1.2 | 0.001013 |
ORF3a | 229 | T229T | acC | acA | 2 | 117 | B.1.2 | 0.000018 |
ORF3a | 229 | T229I | aCc | aTc | 113 | 113 | B.1 | 0.001035 |
ORF3a | 229 | T229I | aCc | aTc | 111 | 111 | B.1.160 | 0.003462 |
ORF3a | 229 | T229A | Acc | Gcc | 93 | 93 | AY.39.1 | 0.003684 |
ORF3a | 229 | T229I | aCc | aTc | 92 | 92 | AY.26 | 0.002605 |
ORF3a | 229 | T229I | aCc | aTc | 86 | 86 | B.1.617.2 | 0.000324 |
ORF3a | 229 | T229T | acC | acT | 74 | 74 | B.1.524 | 0.104079 |
ORF3a | 229 | T229I | aCc | aTc | 73 | 73 | B.1.177.54 | 0.044269 |
ORF3a | 229 | T229I | aCc | aTc | 68 | 68 | AY.39 | 0.00168 |
ORF3a | 229 | T229T | acC | acT | 65 | 68 | P.1 | 0.001024 |
ORF3a | 229 | T229T | acC | acA | 3 | 68 | P.1 | 0.000047 |
ORF3a | 229 | T229I | aCc | aTc | 64 | 64 | B.1.177.82 | 0.030549 |
ORF3a | 229 | T229I | aCc | aTc | 62 | 62 | B.1.2 | 0.000546 |
ORF3a | 229 | T229I | aCc | aTc | 60 | 60 | P.1 | 0.000945 |
ORF3a | 229 | T229I | aCc | aTc | 58 | 58 | B.1.258.9 | 0.29 |
ORF3a | 229 | T229T | acC | acT | 53 | 53 | AY.29.1 | 0.011687 |
ORF3a | 229 | T229N | aCc | aAc | 53 | 53 | B.1.258.3 | 0.088777 |
ORF3a | 229 | T229T | acC | acT | 32 | 47 | AY.43 | 0.000142 |
ORF3a | 229 | T229T | acC | acA | 15 | 47 | AY.43 | 0.000066 |
ORF3a | 229 | T229I | aCc | aTc | 44 | 44 | AY.47 | 0.001369 |
ORF3a | 229 | T229I | aCc | aTc | 43 | 43 | AY.120 | 0.001599 |
ORF3a | 229 | T229S | aCc | aGc | 43 | 43 | B.1.1.7 | 0.000038 |
ORF3a | 229 | T229T | acC | acT | 42 | 42 | AY.110 | 0.004733 |
ORF3a | 229 | T229I | aCc | aTc | 42 | 42 | AY.39.1 | 0.001664 |
ORF3a | 229 | T229I | aCc | aTc | 42 | 42 | AY.43 | 0.000186 |
ORF3a | 229 | T229I | aCc | aTc | 42 | 42 | B.1.536 | 1 |
ORF3a | 229 | T229I | aCc | aTc | 38 | 38 | AY.4.2 | 0.000824 |
ORF3a | 229 | T229I | aCc | aTc | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 229 | T229I | aCc | aTc | 31 | 31 | AY.5 | 0.00064 |
ORF3a | 229 | T229I | aCc | aTc | 30 | 30 | R.1 | 0.0027 |
ORF3a | 229 | T229I | aCc | aTc | 29 | 29 | AY.102 | 0.000769 |
ORF3a | 229 | T229I | aCc | aTc | 28 | 28 | B.1.1 | 0.000508 |
ORF3a | 229 | T229I | aCc | aTc | 26 | 26 | B.1.1.519 | 0.001032 |
ORF3a | 229 | T229I | aCc | aTc | 26 | 26 | C.37 | 0.003018 |
ORF3a | 229 | T229del | ACC | --- | 24 | 24 | All | 0.000005 |
ORF3a | 229 | T229T | acC | acT | 23 | 24 | B.1.1 | 0.000417 |
ORF3a | 229 | T229T | acC | acG | 1 | 24 | B.1.1 | 0.000018 |
ORF3a | 229 | T229I | aCc | aTc | 24 | 24 | B.1.311 | 0.00659 |
ORF3a | 229 | T229S | aCc | aGc | 23 | 23 | AY.32 | 0.012247 |
ORF3a | 229 | T229I | aCc | aTc | 23 | 23 | B.1.258 | 0.001531 |
ORF3a | 229 | T229T | acC | acT | 20 | 22 | AY.20 | 0.000777 |
ORF3a | 229 | T229T | acC | acA | 1 | 22 | AY.20 | 0.000039 |
ORF3a | 229 | T229T | acC | acG | 1 | 22 | AY.20 | 0.000039 |
ORF3a | 229 | T229I | aCc | aTc | 22 | 22 | AY.3 | 0.000219 |
ORF3a | 229 | T229I | aCc | aTc | 22 | 22 | B.1.596 | 0.001917 |
ORF3a | 229 | T229T | acC | acT | 21 | 21 | B.1.177 | 0.000277 |
ORF3a | 229 | T229I | aCc | aTc | 20 | 20 | AY.20 | 0.000777 |
ORF3a | 229 | T229T | acC | acT | 14 | 20 | B.1 | 0.000128 |
ORF3a | 229 | T229T | acC | acA | 4 | 20 | B.1 | 0.000037 |
ORF3a | 229 | T229T | acC | acG | 2 | 20 | B.1 | 0.000018 |
ORF3a | 229 | T229I | aCc | aTc | 20 | 20 | B.1.1.219 | 0.1 |
ORF3a | 229 | T229T | acC | acT | 17 | 19 | AY.75 | 0.000952 |
ORF3a | 229 | T229T | acC | acA | 2 | 19 | AY.75 | 0.000112 |
ORF3a | 229 | T229T | acC | acT | 13 | 18 | AY.44 | 0.000079 |
ORF3a | 229 | T229T | acC | acA | 5 | 18 | AY.44 | 0.00003 |
ORF3a | 229 | T229T | acC | acT | 18 | 18 | B.1.1.70 | 0.006139 |
ORF3a | 229 | T229T | acC | acG | 17 | 18 | B.1.243 | 0.001183 |
ORF3a | 229 | T229T | acC | acT | 1 | 18 | B.1.243 | 0.00007 |
ORF3a | 229 | T229I | aCc | aTc | 18 | 18 | B.1.429 | 0.000424 |
ORF3a | 229 | T229I | aCc | aTc | 17 | 17 | AY.29 | 0.000268 |
ORF3a | 229 | T229N | aCc | aAc | 15 | 15 | B.1.1.7 | 0.000013 |
ORF3a | 229 | T229N | aCc | aAc | 14 | 14 | B.1.214.2 | 0.008393 |
ORF3a | 229 | T229I | aCc | aTc | 14 | 14 | B.1.258.14 | 0.013725 |
ORF3a | 229 | T229T | acC | acT | 14 | 14 | B.1.36 | 0.002043 |
ORF3a | 229 | T229T | acC | acT | 13 | 14 | B.1.429 | 0.000306 |
ORF3a | 229 | T229T | acC | acA | 1 | 14 | B.1.429 | 0.000024 |
ORF3a | 229 | T229T | acC | acT | 14 | 14 | B.6.6 | 0.012444 |
ORF3a | 229 | T229I | aCc | aTc | 13 | 13 | AY.119 | 0.000459 |
ORF3a | 229 | T229S | Acc | Tcc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF3a | 229 | T229T | acC | acT | 7 | 12 | AY.102 | 0.000186 |
ORF3a | 229 | T229T | acC | acA | 5 | 12 | AY.102 | 0.000133 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | B.1.1.214 | 0.000665 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | B.1.36 | 0.001751 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | B.1.427 | 0.000606 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | B.1.526 | 0.000282 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | D.2 | 0.0009 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | P.1.10 | 0.003234 |
ORF3a | 229 | T229I | aCc | aTc | 12 | 12 | P.1.14 | 0.000574 |
ORF3a | 229 | T229T | acC | acT | 11 | 11 | AY.109 | 0.008136 |
ORF3a | 229 | T229T | acC | acG | 7 | 11 | AY.3 | 0.00007 |
ORF3a | 229 | T229T | acC | acT | 3 | 11 | AY.3 | 0.00003 |
ORF3a | 229 | T229T | acC | acA | 1 | 11 | AY.3 | 0.00001 |
ORF3a | 229 | T229I | aCc | aTc | 11 | 11 | AY.42 | 0.000443 |
ORF3a | 229 | T229T | acC | acA | 8 | 11 | AY.5 | 0.000165 |
ORF3a | 229 | T229T | acC | acT | 3 | 11 | AY.5 | 0.000062 |
ORF3a | 229 | T229A | Acc | Gcc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 229 | T229T | acC | acA | 9 | 10 | AY.120 | 0.000335 |
ORF3a | 229 | T229T | acC | acT | 1 | 10 | AY.120 | 0.000037 |
ORF3a | 229 | T229A | Acc | Gcc | 10 | 10 | B.1 | 0.000092 |
ORF3a | 229 | T229A | Acc | Gcc | 10 | 10 | B.1.617.2 | 0.000038 |
ORF3a | 229 | T229N | aCc | aAc | 10 | 10 | C.36.3.1 | 0.027174 |
ORF3a | 229 | T229I | aCc | aTc | 10 | 10 | Q.1 | 0.001263 |
ORF3a | 229 | T229T | acC | acT | 8 | 9 | AY.116 | 0.002294 |
ORF3a | 229 | T229T | acC | acA | 1 | 9 | AY.116 | 0.000287 |
ORF3a | 229 | T229T | acC | acT | 9 | 9 | AY.119 | 0.000318 |
ORF3a | 229 | T229T | acC | acT | 9 | 9 | AY.25 | 0.000054 |
ORF3a | 229 | T229S | aCc | aGc | 8 | 9 | AY.44 | 0.000049 |
ORF3a | 229 | T229S | Acc | Tcc | 1 | 9 | AY.44 | 0.000006 |
ORF3a | 229 | T229I | aCc | aTc | 9 | 9 | B.1.1.217 | 0.032727 |
ORF3a | 229 | T229I | aCc | aTc | 9 | 9 | B.1.221.1 | 0.026163 |
ORF3a | 229 | T229I | aCc | aTc | 9 | 9 | B.1.588 | 0.008189 |
ORF3a | 229 | T229T | acC | acT | 4 | 8 | AY.39 | 0.000099 |
ORF3a | 229 | T229T | acC | acA | 4 | 8 | AY.39 | 0.000099 |
ORF3a | 229 | T229T | acC | acA | 6 | 8 | AY.75.1 | 0.001082 |
ORF3a | 229 | T229T | acC | acT | 2 | 8 | AY.75.1 | 0.000361 |
ORF3a | 229 | T229I | aCc | aTc | 8 | 8 | AY.99.2 | 0.000737 |
ORF3a | 229 | T229T | acC | acT | 8 | 8 | B.1.221 | 0.000568 |
ORF3a | 229 | T229A | Acc | Gcc | 8 | 8 | B.1.526 | 0.000188 |
ORF3a | 229 | T229I | aCc | aTc | 8 | 8 | B.1.621 | 0.000708 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | AY.46 | 0.000729 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.1.220 | 0.013011 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.1.371 | 0.072917 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.108 | 0.040698 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.221 | 0.000497 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.243 | 0.000487 |
ORF3a | 229 | T229N | aCc | aAc | 7 | 7 | B.1.466.2 | 0.002739 |
ORF3a | 229 | T229I | aCc | aTc | 7 | 7 | B.1.595 | 0.001827 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | AY.100 | 0.000276 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | AY.23 | 0.000418 |
ORF3a | 229 | T229T | acC | acA | 6 | 6 | AY.23 | 0.000418 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | AY.36 | 0.000889 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | AY.45 | 0.00073 |
ORF3a | 229 | T229T | acC | acA | 4 | 6 | AY.61 | 0.000419 |
ORF3a | 229 | T229T | acC | acT | 2 | 6 | AY.61 | 0.00021 |
ORF3a | 229 | T229T | acC | acT | 4 | 6 | AY.9.2 | 0.000147 |
ORF3a | 229 | T229T | acC | acA | 2 | 6 | AY.9.2 | 0.000073 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.1.1.10 | 0.006689 |
ORF3a | 229 | T229T | acC | acT | 6 | 6 | B.1.177.10 | 0.005268 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.1.177.60 | 0.001311 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.1.351 | 0.000178 |
ORF3a | 229 | T229N | aCc | aAc | 6 | 6 | B.1.427 | 0.000303 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.1.438.1 | 0.000644 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.1.517 | 0.002562 |
ORF3a | 229 | T229I | aCc | aTc | 6 | 6 | B.11 | 0.030769 |
ORF3a | 229 | T229T | acC | acT | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 229 | T229T | acC | acT | 4 | 5 | AY.113 | 0.00057 |
ORF3a | 229 | T229T | acC | acA | 1 | 5 | AY.113 | 0.000142 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | AY.121 | 0.000677 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 229 | T229A | Acc | Gcc | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 229 | T229A | Acc | Gcc | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 229 | T229T | acC | acT | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | B.1.1.277 | 0.003794 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | B.1.177.4 | 0.001055 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF3a | 229 | T229A | Acc | Gcc | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 229 | T229T | acC | acA | 3 | 5 | B.1.621 | 0.000266 |
ORF3a | 229 | T229T | acC | acT | 2 | 5 | B.1.621 | 0.000177 |
ORF3a | 229 | T229I | aCc | aTc | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 229 | T229T | acC | acT | 2 | 4 | 0.111111 | |
ORF3a | 229 | T229T | acC | acA | 2 | 4 | 0.111111 | |
ORF3a | 229 | T229P | Acc | Ccc | 4 | 4 | All | 0.000001 |
ORF3a | 229 | T229T | acC | acT | 4 | 4 | AY.1 | 0.001583 |
ORF3a | 229 | T229T | acC | acA | 4 | 4 | AY.10 | 0.00212 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 229 | T229T | acC | acA | 4 | 4 | AY.19 | 0.004561 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | AY.32 | 0.00213 |
ORF3a | 229 | T229del | ACC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | B.1.1.222 | 0.000816 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | B.1.1.311 | 0.001433 |
ORF3a | 229 | T229del | ACC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 229 | T229T | acC | acT | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | B.1.177.86 | 0.000734 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | B.1.478 | 0.047059 |
ORF3a | 229 | T229N | aCc | aAc | 4 | 4 | B.1.497 | 0.001259 |
ORF3a | 229 | T229del | ACC | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 229 | T229T | acC | acT | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 229 | T229N | aCc | aAc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 229 | T229T | acC | acT | 4 | 4 | B.1.88.1 | 0.019231 |
ORF3a | 229 | T229A | Acc | Gcc | 4 | 4 | P.6 | 0.012579 |
ORF3a | 229 | T229I | aCc | aTc | 4 | 4 | Q.4 | 0.001819 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.86 | 0.00249 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 229 | T229S | Acc | Tcc | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.110 | 0.013575 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.177.21 | 0.000229 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.258.3 | 0.005025 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.318 | 0.115385 |
ORF3a | 229 | T229T | acC | acA | 2 | 3 | B.1.351 | 0.000059 |
ORF3a | 229 | T229T | acC | acT | 1 | 3 | B.1.351 | 0.00003 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 229 | T229T | acC | acA | 2 | 3 | B.1.497 | 0.00063 |
ORF3a | 229 | T229T | acC | acT | 1 | 3 | B.1.497 | 0.000315 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.509 | 0.002597 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.564 | 0.001278 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | B.1.619.1 | 0.001924 |
ORF3a | 229 | T229I | aCc | aTc | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 229 | T229T | acC | acT | 3 | 3 | R.1 | 0.00027 |
ORF3a | 229 | T229del | ACC | --- | 2 | 2 | 0.111111 | |
ORF3a | 229 | T229del1 | Acc | -cc | 1 | 2 | All | 0 |
ORF3a | 229 | T229del1 | aCc | a-c | 1 | 2 | All | 0 |
ORF3a | 229 | T229A | Acc | Gcc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 229 | T229A | Acc | Gcc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 229 | T229T | acC | acA | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 229 | T229A | Acc | Gcc | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 229 | T229A | Acc | Gcc | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 229 | T229T | acC | acT | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 229 | T229T | acC | acA | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.77 | 0.002255 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.8 | 0.001212 |
ORF3a | 229 | T229S | Acc | Tcc | 2 | 2 | AY.86 | 0.00166 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.95 | 0.001522 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.97 | 0.003401 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 229 | T229T | acC | acT | 1 | 2 | B | 0.000128 |
ORF3a | 229 | T229T | acC | acA | 1 | 2 | B | 0.000128 |
ORF3a | 229 | T229S | Acc | Tcc | 2 | 2 | B.1 | 0.000018 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.1.382 | 0.071429 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.1.486 | 0.003155 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.127 | 0.004396 |
ORF3a | 229 | T229S | aCc | aGc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.36.39 | 0.004435 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.564.1 | 0.003155 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.565 | 0.001621 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 229 | T229A | Acc | Gcc | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.597 | 0.009259 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 229 | T229S | aCc | aGc | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | B.40 | 0.000729 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | C.36.2 | 0.068966 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 229 | T229T | acC | acT | 2 | 2 | D.2 | 0.00015 |
ORF3a | 229 | T229N | aCc | aAc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | P.1.2 | 0.002312 |
ORF3a | 229 | T229I | aCc | aTc | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 229 | T229P | Acc | Ccc | 1 | 1 | A | 0.000387 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | A.1 | 0.000282 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 229 | T229G | ACC | GGT | 1 | 1 | All | 0 |
ORF3a | 229 | T229L | ACC | TTG | 1 | 1 | All | 0 |
ORF3a | 229 | T229H | ACc | CAc | 1 | 1 | All | 0 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 229 | T229S | Acc | Tcc | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 229 | T229S | aCc | aGc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 229 | T229S | aCc | aGc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 229 | T229S | Acc | Tcc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 229 | T229P | Acc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 229 | T229S | aCc | aGc | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 229 | T229S | aCc | aGc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 229 | T229A | AcC | GcT | 1 | 1 | B | 0.000128 |
ORF3a | 229 | T229L | ACC | TTG | 1 | 1 | B | 0.000128 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.144 | 0.028571 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.225 | 0.007194 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.229 | 0.005747 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.275 | 0.011236 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.386 | 0.066667 |
ORF3a | 229 | T229S | Acc | Tcc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.467 | 0.019231 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.118 | 0.006711 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.160.29 | 0.004219 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.167 | 0.007812 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.85 | 0.005435 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.188 | 0.016667 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.281 | 0.021739 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 229 | T229del1 | Acc | -cc | 1 | 1 | B.1.36.21 | 0.00216 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.363 | 0.012987 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 229 | T229P | Acc | Ccc | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.404 | 0.001302 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.465 | 0.003802 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 229 | T229G | ACC | GGT | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.532 | 0.006211 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.545 | 0.014493 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 229 | T229P | Acc | Ccc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 229 | T229del1 | aCc | a-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 229 | T229T | acC | acA | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | B.39 | 0.002331 |
ORF3a | 229 | T229A | Acc | Gcc | 1 | 1 | C.1 | 0.002392 |
ORF3a | 229 | T229N | aCc | aAc | 1 | 1 | C.26 | 0.007353 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | P.1.10.1 | 0.00813 |
ORF3a | 229 | T229T | acC | acT | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | P.1.4 | 0.000977 |
ORF3a | 229 | T229H | ACc | CAc | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF3a | 229 | T229del | ACC | --- | 1 | 1 | R.1 | 0.00009 |
ORF3a | 229 | T229I | aCc | aTc | 1 | 1 | W.4 | 0.001351 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|