CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 229

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a229T229InonsynaCcaTc39553955126077-26079
ORF3a229T229TsynacCacT367425410.69161726077-26079
ORF3a229T229TsynacCacA367411010.29967326077-26079
ORF3a229T229TsynacCacG3674320.0087098526077-26079
ORF3a229T229SnonsynAccTcc5534690.84810126077-26079
ORF3a229T229SnonsynaCcaGc553840.15189926077-26079
ORF3a229T229NnonsynaCcaAc295295126077-26079
ORF3a229T229AnonsynAccGcc1781770.99438226077-26079
ORF3a229T229AnonsynAcCGcT17810.0056179826077-26079
ORF3a229T229deldelACC---2424126077-26079
ORF3a229T229PnonsynAccCcc44126077-26079
ORF3a229T229del1delaCca-c210.526077-26079
ORF3a229T229del1delAcc-cc210.526077-26079
ORF3a229T229GnonsynACCGGT11126077-26079
ORF3a229T229LnonsynACCTTG11126077-26079
ORF3a229T229HnonsynACcCAc11126077-26079

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a229T229IaCcaTc39553955All0.000756
ORF3a229T229TacCacT25413674All0.000486
ORF3a229T229TacCacA11013674All0.000211
ORF3a229T229TacCacG323674All0.000006
ORF3a229T229TacCacT11431143AY.260.032359
ORF3a229T229IaCcaTc953953B.1.1.70.000853
ORF3a229T229TacCacA742742AY.580.673321
ORF3a229T229SAccTcc469553All0.00009
ORF3a229T229SaCcaGc84553All0.000016
ORF3a229T229IaCcaTc479479AY.40.000746
ORF3a229T229SAccTcc445447AY.40.000693
ORF3a229T229SaCcaGc2447AY.40.000003
ORF3a229T229NaCcaAc295295All0.000056
ORF3a229T229TacCacT251289AY.40.000391
ORF3a229T229TacCacA37289AY.40.000058
ORF3a229T229TacCacG1289AY.40.000002
ORF3a229T229TacCacT245259B.1.1.70.000219
ORF3a229T229TacCacA13259B.1.1.70.000012
ORF3a229T229TacCacG1259B.1.1.70.000001
ORF3a229T229TacCacA189240B.1.617.20.000712
ORF3a229T229TacCacT51240B.1.617.20.000192
ORF3a229T229IaCcaTc205205AY.1030.001273
ORF3a229T229AAccGcc177178All0.000034
ORF3a229T229AAcCGcT1178All0
ORF3a229T229IaCcaTc176176AY.250.001059
ORF3a229T229IaCcaTc163163AY.440.000992
ORF3a229T229NaCcaAc151151C.1.20.642553
ORF3a229T229TacCacT125130AY.1030.000776
ORF3a229T229TacCacA3130AY.1030.000019
ORF3a229T229TacCacG2130AY.1030.000012
ORF3a229T229TacCacT115117B.1.20.001013
ORF3a229T229TacCacA2117B.1.20.000018
ORF3a229T229IaCcaTc113113B.10.001035
ORF3a229T229IaCcaTc111111B.1.1600.003462
ORF3a229T229AAccGcc9393AY.39.10.003684
ORF3a229T229IaCcaTc9292AY.260.002605
ORF3a229T229IaCcaTc8686B.1.617.20.000324
ORF3a229T229TacCacT7474B.1.5240.104079
ORF3a229T229IaCcaTc7373B.1.177.540.044269
ORF3a229T229IaCcaTc6868AY.390.00168
ORF3a229T229TacCacT6568P.10.001024
ORF3a229T229TacCacA368P.10.000047
ORF3a229T229IaCcaTc6464B.1.177.820.030549
ORF3a229T229IaCcaTc6262B.1.20.000546
ORF3a229T229IaCcaTc6060P.10.000945
ORF3a229T229IaCcaTc5858B.1.258.90.29
ORF3a229T229TacCacT5353AY.29.10.011687
ORF3a229T229NaCcaAc5353B.1.258.30.088777
ORF3a229T229TacCacT3247AY.430.000142
ORF3a229T229TacCacA1547AY.430.000066
ORF3a229T229IaCcaTc4444AY.470.001369
ORF3a229T229IaCcaTc4343AY.1200.001599
ORF3a229T229SaCcaGc4343B.1.1.70.000038
ORF3a229T229TacCacT4242AY.1100.004733
ORF3a229T229IaCcaTc4242AY.39.10.001664
ORF3a229T229IaCcaTc4242AY.430.000186
ORF3a229T229IaCcaTc4242B.1.5361
ORF3a229T229IaCcaTc3838AY.4.20.000824
ORF3a229T229IaCcaTc3636B.1.1770.000474
ORF3a229T229IaCcaTc3131AY.50.00064
ORF3a229T229IaCcaTc3030R.10.0027
ORF3a229T229IaCcaTc2929AY.1020.000769
ORF3a229T229IaCcaTc2828B.1.10.000508
ORF3a229T229IaCcaTc2626B.1.1.5190.001032
ORF3a229T229IaCcaTc2626C.370.003018
ORF3a229T229delACC---2424All0.000005
ORF3a229T229TacCacT2324B.1.10.000417
ORF3a229T229TacCacG124B.1.10.000018
ORF3a229T229IaCcaTc2424B.1.3110.00659
ORF3a229T229SaCcaGc2323AY.320.012247
ORF3a229T229IaCcaTc2323B.1.2580.001531
ORF3a229T229TacCacT2022AY.200.000777
ORF3a229T229TacCacA122AY.200.000039
ORF3a229T229TacCacG122AY.200.000039
ORF3a229T229IaCcaTc2222AY.30.000219
ORF3a229T229IaCcaTc2222B.1.5960.001917
ORF3a229T229TacCacT2121B.1.1770.000277
ORF3a229T229IaCcaTc2020AY.200.000777
ORF3a229T229TacCacT1420B.10.000128
ORF3a229T229TacCacA420B.10.000037
ORF3a229T229TacCacG220B.10.000018
ORF3a229T229IaCcaTc2020B.1.1.2190.1
ORF3a229T229TacCacT1719AY.750.000952
ORF3a229T229TacCacA219AY.750.000112
ORF3a229T229TacCacT1318AY.440.000079
ORF3a229T229TacCacA518AY.440.00003
ORF3a229T229TacCacT1818B.1.1.700.006139
ORF3a229T229TacCacG1718B.1.2430.001183
ORF3a229T229TacCacT118B.1.2430.00007
ORF3a229T229IaCcaTc1818B.1.4290.000424
ORF3a229T229IaCcaTc1717AY.290.000268
ORF3a229T229NaCcaAc1515B.1.1.70.000013
ORF3a229T229NaCcaAc1414B.1.214.20.008393
ORF3a229T229IaCcaTc1414B.1.258.140.013725
ORF3a229T229TacCacT1414B.1.360.002043
ORF3a229T229TacCacT1314B.1.4290.000306
ORF3a229T229TacCacA114B.1.4290.000024
ORF3a229T229TacCacT1414B.6.60.012444
ORF3a229T229IaCcaTc1313AY.1190.000459
ORF3a229T229SAccTcc1313B.1.617.20.000049
ORF3a229T229TacCacT712AY.1020.000186
ORF3a229T229TacCacA512AY.1020.000133
ORF3a229T229IaCcaTc1212B.1.1.2140.000665
ORF3a229T229IaCcaTc1212B.1.360.001751
ORF3a229T229IaCcaTc1212B.1.4270.000606
ORF3a229T229IaCcaTc1212B.1.5260.000282
ORF3a229T229IaCcaTc1212D.20.0009
ORF3a229T229IaCcaTc1212P.1.100.003234
ORF3a229T229IaCcaTc1212P.1.140.000574
ORF3a229T229TacCacT1111AY.1090.008136
ORF3a229T229TacCacG711AY.30.00007
ORF3a229T229TacCacT311AY.30.00003
ORF3a229T229TacCacA111AY.30.00001
ORF3a229T229IaCcaTc1111AY.420.000443
ORF3a229T229TacCacA811AY.50.000165
ORF3a229T229TacCacT311AY.50.000062
ORF3a229T229AAccGcc1111B.1.1.70.00001
ORF3a229T229TacCacA910AY.1200.000335
ORF3a229T229TacCacT110AY.1200.000037
ORF3a229T229AAccGcc1010B.10.000092
ORF3a229T229AAccGcc1010B.1.617.20.000038
ORF3a229T229NaCcaAc1010C.36.3.10.027174
ORF3a229T229IaCcaTc1010Q.10.001263
ORF3a229T229TacCacT89AY.1160.002294
ORF3a229T229TacCacA19AY.1160.000287
ORF3a229T229TacCacT99AY.1190.000318
ORF3a229T229TacCacT99AY.250.000054
ORF3a229T229SaCcaGc89AY.440.000049
ORF3a229T229SAccTcc19AY.440.000006
ORF3a229T229IaCcaTc99B.1.1.2170.032727
ORF3a229T229IaCcaTc99B.1.221.10.026163
ORF3a229T229IaCcaTc99B.1.5880.008189
ORF3a229T229TacCacT48AY.390.000099
ORF3a229T229TacCacA48AY.390.000099
ORF3a229T229TacCacA68AY.75.10.001082
ORF3a229T229TacCacT28AY.75.10.000361
ORF3a229T229IaCcaTc88AY.99.20.000737
ORF3a229T229TacCacT88B.1.2210.000568
ORF3a229T229AAccGcc88B.1.5260.000188
ORF3a229T229IaCcaTc88B.1.6210.000708
ORF3a229T229IaCcaTc77AY.460.000729
ORF3a229T229IaCcaTc77B.1.1.2200.013011
ORF3a229T229IaCcaTc77B.1.1.3710.072917
ORF3a229T229IaCcaTc77B.1.1080.040698
ORF3a229T229IaCcaTc77B.1.2210.000497
ORF3a229T229IaCcaTc77B.1.2430.000487
ORF3a229T229NaCcaAc77B.1.466.20.002739
ORF3a229T229IaCcaTc77B.1.5950.001827
ORF3a229T229IaCcaTc66AY.1000.000276
ORF3a229T229IaCcaTc66AY.230.000418
ORF3a229T229TacCacA66AY.230.000418
ORF3a229T229IaCcaTc66AY.360.000889
ORF3a229T229IaCcaTc66AY.450.00073
ORF3a229T229TacCacA46AY.610.000419
ORF3a229T229TacCacT26AY.610.00021
ORF3a229T229TacCacT46AY.9.20.000147
ORF3a229T229TacCacA26AY.9.20.000073
ORF3a229T229IaCcaTc66B.1.1.100.006689
ORF3a229T229TacCacT66B.1.177.100.005268
ORF3a229T229IaCcaTc66B.1.177.600.001311
ORF3a229T229IaCcaTc66B.1.3510.000178
ORF3a229T229NaCcaAc66B.1.4270.000303
ORF3a229T229IaCcaTc66B.1.438.10.000644
ORF3a229T229IaCcaTc66B.1.5170.002562
ORF3a229T229IaCcaTc66B.110.030769
ORF3a229T229TacCacT66P.1.140.000287
ORF3a229T229IaCcaTc55AY.1110.000916
ORF3a229T229TacCacT45AY.1130.00057
ORF3a229T229TacCacA15AY.1130.000142
ORF3a229T229IaCcaTc55AY.1210.000677
ORF3a229T229IaCcaTc55AY.330.000334
ORF3a229T229AAccGcc55AY.40.000008
ORF3a229T229AAccGcc55AY.440.00003
ORF3a229T229IaCcaTc55AY.60.000206
ORF3a229T229TacCacT55AY.980.000395
ORF3a229T229IaCcaTc55B.1.1.2770.003794
ORF3a229T229IaCcaTc55B.1.177.40.001055
ORF3a229T229IaCcaTc55B.1.258.170.00052
ORF3a229T229AAccGcc55B.1.4290.000118
ORF3a229T229TacCacA35B.1.6210.000266
ORF3a229T229TacCacT25B.1.6210.000177
ORF3a229T229IaCcaTc55Q.80.000825
ORF3a229T229TacCacT240.111111
ORF3a229T229TacCacA240.111111
ORF3a229T229PAccCcc44All0.000001
ORF3a229T229TacCacT44AY.10.001583
ORF3a229T229TacCacA44AY.100.00212
ORF3a229T229IaCcaTc44AY.1130.00057
ORF3a229T229IaCcaTc44AY.120.10.001284
ORF3a229T229TacCacA44AY.190.004561
ORF3a229T229IaCcaTc44AY.320.00213
ORF3a229T229delACC---44AY.430.000018
ORF3a229T229IaCcaTc44AY.610.000419
ORF3a229T229IaCcaTc44B.1.1.2220.000816
ORF3a229T229IaCcaTc44B.1.1.3110.001433
ORF3a229T229delACC---44B.1.1.70.000004
ORF3a229T229TacCacT44B.1.1600.000125
ORF3a229T229IaCcaTc44B.1.177.860.000734
ORF3a229T229IaCcaTc44B.1.4780.047059
ORF3a229T229NaCcaAc44B.1.4970.001259
ORF3a229T229delACC---44B.1.5250.000453
ORF3a229T229TacCacT44B.1.5750.001214
ORF3a229T229NaCcaAc44B.1.617.20.000015
ORF3a229T229IaCcaTc44B.1.6370.000292
ORF3a229T229TacCacT44B.1.88.10.019231
ORF3a229T229AAccGcc44P.60.012579
ORF3a229T229IaCcaTc44Q.40.001819
ORF3a229T229IaCcaTc33AY.1170.000254
ORF3a229T229IaCcaTc33AY.3.10.000256
ORF3a229T229IaCcaTc33AY.750.000168
ORF3a229T229IaCcaTc33AY.75.10.000541
ORF3a229T229IaCcaTc33AY.860.00249
ORF3a229T229IaCcaTc33AY.9.10.000251
ORF3a229T229IaCcaTc33AY.980.000237
ORF3a229T229SAccTcc33B.1.10.000054
ORF3a229T229IaCcaTc33B.1.1.250.001706
ORF3a229T229IaCcaTc33B.1.1100.013575
ORF3a229T229IaCcaTc33B.1.177.210.000229
ORF3a229T229IaCcaTc33B.1.258.30.005025
ORF3a229T229IaCcaTc33B.1.3180.115385
ORF3a229T229TacCacA23B.1.3510.000059
ORF3a229T229TacCacT13B.1.3510.00003
ORF3a229T229IaCcaTc33B.1.4000.001287
ORF3a229T229TacCacA23B.1.4970.00063
ORF3a229T229TacCacT13B.1.4970.000315
ORF3a229T229IaCcaTc33B.1.5090.002597
ORF3a229T229IaCcaTc33B.1.5640.001278
ORF3a229T229IaCcaTc33B.1.619.10.001924
ORF3a229T229IaCcaTc33Q.30.000435
ORF3a229T229TacCacT33R.10.00027
ORF3a229T229delACC---220.111111
ORF3a229T229del1Acc-cc12All0
ORF3a229T229del1aCca-c12All0
ORF3a229T229AAccGcc22AY.1020.000053
ORF3a229T229AAccGcc22AY.1030.000012
ORF3a229T229TacCacA22AY.120.10.000642
ORF3a229T229IaCcaTc22AY.16.10.00094
ORF3a229T229NaCcaAc22AY.16.10.00094
ORF3a229T229TacCacT22AY.290.000032
ORF3a229T229IaCcaTc22AY.29.10.000441
ORF3a229T229AAccGcc22AY.30.00002
ORF3a229T229NaCcaAc22AY.340.000194
ORF3a229T229TacCacT22AY.360.000296
ORF3a229T229AAccGcc22AY.390.000049
ORF3a229T229TacCacT12AY.4.20.000022
ORF3a229T229TacCacA12AY.4.20.000022
ORF3a229T229IaCcaTc22AY.46.20.001271
ORF3a229T229TacCacT22AY.46.20.001271
ORF3a229T229TacCacT22AY.470.000062
ORF3a229T229IaCcaTc22AY.590.001059
ORF3a229T229TacCacT22AY.620.000871
ORF3a229T229IaCcaTc22AY.710.00095
ORF3a229T229IaCcaTc22AY.770.002255
ORF3a229T229IaCcaTc22AY.80.001212
ORF3a229T229SAccTcc22AY.860.00166
ORF3a229T229IaCcaTc22AY.950.001522
ORF3a229T229IaCcaTc22AY.970.003401
ORF3a229T229IaCcaTc22AY.98.10.000097
ORF3a229T229TacCacT12B0.000128
ORF3a229T229TacCacA12B0.000128
ORF3a229T229SAccTcc22B.10.000018
ORF3a229T229NaCcaAc22B.1.1.2200.003717
ORF3a229T229TacCacT22B.1.1.3170.000823
ORF3a229T229TacCacT22B.1.1.3720.001377
ORF3a229T229IaCcaTc22B.1.1.3820.071429
ORF3a229T229IaCcaTc22B.1.1.390.001019
ORF3a229T229TacCacT22B.1.1.4860.003155
ORF3a229T229IaCcaTc22B.1.1.630.000772
ORF3a229T229IaCcaTc22B.1.1270.004396
ORF3a229T229SaCcaGc22B.1.20.000018
ORF3a229T229NaCcaAc22B.1.2430.000139
ORF3a229T229TacCacT22B.1.258.170.000208
ORF3a229T229TacCacT22B.1.36.220.002415
ORF3a229T229TacCacT22B.1.36.290.001035
ORF3a229T229IaCcaTc22B.1.36.390.004435
ORF3a229T229TacCacT22B.1.36.80.002
ORF3a229T229IaCcaTc22B.1.3690.00057
ORF3a229T229TacCacT22B.1.4700.002809
ORF3a229T229IaCcaTc22B.1.5250.000226
ORF3a229T229TacCacT22B.1.5250.000226
ORF3a229T229IaCcaTc22B.1.564.10.003155
ORF3a229T229IaCcaTc22B.1.5650.001621
ORF3a229T229IaCcaTc22B.1.5750.000607
ORF3a229T229IaCcaTc22B.1.5760.001813
ORF3a229T229AAccGcc22B.1.5770.001375
ORF3a229T229TacCacT22B.1.5820.000981
ORF3a229T229IaCcaTc22B.1.5970.009259
ORF3a229T229IaCcaTc22B.1.617.10.000258
ORF3a229T229SaCcaGc22B.1.6200.001892
ORF3a229T229NaCcaAc22B.1.6210.000177
ORF3a229T229IaCcaTc22B.400.000729
ORF3a229T229IaCcaTc22C.36.20.068966
ORF3a229T229IaCcaTc22C.37.10.005236
ORF3a229T229TacCacT22D.20.00015
ORF3a229T229NaCcaAc22P.10.000032
ORF3a229T229IaCcaTc22P.1.20.002312
ORF3a229T229IaCcaTc22P.1.70.000639
ORF3a229T229PAccCcc11A0.000387
ORF3a229T229IaCcaTc11A.10.000282
ORF3a229T229NaCcaAc11A.2.50.000499
ORF3a229T229IaCcaTc11A.23.10.000704
ORF3a229T229AAccGcc11A.23.10.000704
ORF3a229T229GACCGGT11All0
ORF3a229T229LACCTTG11All0
ORF3a229T229HACcCAc11All0
ORF3a229T229TacCacT11AT.10.005128
ORF3a229T229TacCacT11AY.1000.000046
ORF3a229T229AAccGcc11AY.1000.000046
ORF3a229T229SAccTcc11AY.1010.00049
ORF3a229T229IaCcaTc11AY.1010.00049
ORF3a229T229NaCcaAc11AY.1020.000027
ORF3a229T229SaCcaGc11AY.1030.000006
ORF3a229T229IaCcaTc11AY.1040.001984
ORF3a229T229IaCcaTc11AY.1060.000335
ORF3a229T229IaCcaTc11AY.1090.00074
ORF3a229T229TacCacT11AY.1140.000231
ORF3a229T229IaCcaTc11AY.1160.000287
ORF3a229T229TacCacT11AY.1180.000063
ORF3a229T229NaCcaAc11AY.1190.000035
ORF3a229T229delACC---11AY.1200.000037
ORF3a229T229TacCacA11AY.130.000161
ORF3a229T229IaCcaTc11AY.160.00038
ORF3a229T229IaCcaTc11AY.210.001898
ORF3a229T229NaCcaAc11AY.230.00007
ORF3a229T229TacCacT11AY.23.10.000417
ORF3a229T229IaCcaTc11AY.23.10.000417
ORF3a229T229AAccGcc11AY.260.000028
ORF3a229T229IaCcaTc11AY.270.000065
ORF3a229T229NaCcaAc11AY.290.000016
ORF3a229T229SaCcaGc11AY.30.00001
ORF3a229T229NaCcaAc11AY.3.10.000085
ORF3a229T229TacCacT11AY.300.000396
ORF3a229T229IaCcaTc11AY.300.000396
ORF3a229T229TacCacA11AY.340.000097
ORF3a229T229IaCcaTc11AY.340.000097
ORF3a229T229IaCcaTc11AY.380.000499
ORF3a229T229TacCacT11AY.380.000499
ORF3a229T229SAccTcc11AY.390.000025
ORF3a229T229PAccCcc11AY.40.000002
ORF3a229T229AAccGcc11AY.4.20.000022
ORF3a229T229TacCacT11AY.4.2.10.000149
ORF3a229T229NaCcaAc11AY.4.30.000842
ORF3a229T229IaCcaTc11AY.4.50.000107
ORF3a229T229IaCcaTc11AY.410.000294
ORF3a229T229TacCacT11AY.410.000294
ORF3a229T229SaCcaGc11AY.420.00004
ORF3a229T229SaCcaGc11AY.430.000004
ORF3a229T229NaCcaAc11AY.430.000004
ORF3a229T229NaCcaAc11AY.440.000006
ORF3a229T229TacCacA11AY.450.000122
ORF3a229T229AAccGcc11AY.450.000122
ORF3a229T229TacCacT11AY.460.000104
ORF3a229T229IaCcaTc11AY.46.30.000934
ORF3a229T229IaCcaTc11AY.46.60.000072
ORF3a229T229IaCcaTc11AY.5.40.000277
ORF3a229T229TacCacA11AY.520.000814
ORF3a229T229TacCacA11AY.540.000095
ORF3a229T229IaCcaTc11AY.560.001605
ORF3a229T229IaCcaTc11AY.580.000907
ORF3a229T229TacCacA11AY.590.00053
ORF3a229T229TacCacT11AY.60.000041
ORF3a229T229IaCcaTc11AY.620.000436
ORF3a229T229IaCcaTc11AY.640.000595
ORF3a229T229AAccGcc11AY.670.000464
ORF3a229T229TacCacT11AY.670.000464
ORF3a229T229TacCacT11AY.680.000274
ORF3a229T229delACC---11AY.680.000274
ORF3a229T229IaCcaTc11AY.690.000187
ORF3a229T229TacCacA11AY.700.000209
ORF3a229T229IaCcaTc11AY.700.000209
ORF3a229T229TacCacT11AY.710.000475
ORF3a229T229IaCcaTc11AY.720.001361
ORF3a229T229AAccGcc11AY.750.000056
ORF3a229T229IaCcaTc11AY.840.000437
ORF3a229T229IaCcaTc11AY.850.000427
ORF3a229T229TacCacA11AY.880.000884
ORF3a229T229IaCcaTc11AY.90.000068
ORF3a229T229AAccGcc11AY.9.10.000084
ORF3a229T229IaCcaTc11AY.9.20.000037
ORF3a229T229IaCcaTc11AY.910.00073
ORF3a229T229IaCcaTc11AY.920.000287
ORF3a229T229TacCacA11AY.98.10.000048
ORF3a229T229IaCcaTc11AY.990.001049
ORF3a229T229AAccGcc11AY.99.20.000092
ORF3a229T229IaCcaTc11AZ.30.00152
ORF3a229T229AAcCGcT11B0.000128
ORF3a229T229LACCTTG11B0.000128
ORF3a229T229delACC---11B.10.000009
ORF3a229T229NaCcaAc11B.10.000009
ORF3a229T229NaCcaAc11B.1.10.000018
ORF3a229T229AAccGcc11B.1.10.000018
ORF3a229T229NaCcaAc11B.1.1.10.000327
ORF3a229T229IaCcaTc11B.1.1.1210.002427
ORF3a229T229IaCcaTc11B.1.1.1440.028571
ORF3a229T229IaCcaTc11B.1.1.1530.001095
ORF3a229T229NaCcaAc11B.1.1.1940.00495
ORF3a229T229TacCacT11B.1.1.2220.000204
ORF3a229T229IaCcaTc11B.1.1.2250.007194
ORF3a229T229IaCcaTc11B.1.1.2290.005747
ORF3a229T229IaCcaTc11B.1.1.2650.003155
ORF3a229T229IaCcaTc11B.1.1.2750.011236
ORF3a229T229IaCcaTc11B.1.1.280.000311
ORF3a229T229IaCcaTc11B.1.1.2980.000862
ORF3a229T229IaCcaTc11B.1.1.3060.000438
ORF3a229T229delACC---11B.1.1.3110.000358
ORF3a229T229TacCacT11B.1.1.3160.000925
ORF3a229T229IaCcaTc11B.1.1.3180.000302
ORF3a229T229IaCcaTc11B.1.1.330.000421
ORF3a229T229IaCcaTc11B.1.1.3480.000796
ORF3a229T229IaCcaTc11B.1.1.3690.000446
ORF3a229T229IaCcaTc11B.1.1.370.000193
ORF3a229T229TacCacT11B.1.1.370.000193
ORF3a229T229IaCcaTc11B.1.1.3860.066667
ORF3a229T229SAccTcc11B.1.1.390.00051
ORF3a229T229IaCcaTc11B.1.1.3980.003226
ORF3a229T229IaCcaTc11B.1.1.4130.006897
ORF3a229T229IaCcaTc11B.1.1.4340.000349
ORF3a229T229TacCacA11B.1.1.440.00241
ORF3a229T229IaCcaTc11B.1.1.4670.019231
ORF3a229T229AAccGcc11B.1.1.5190.00004
ORF3a229T229TacCacT11B.1.1.5190.00004
ORF3a229T229IaCcaTc11B.1.1.700.000341
ORF3a229T229IaCcaTc11B.1.1110.001175
ORF3a229T229TacCacA11B.1.1180.006711
ORF3a229T229IaCcaTc11B.1.160.160.000929
ORF3a229T229IaCcaTc11B.1.160.290.004219
ORF3a229T229IaCcaTc11B.1.1670.007812
ORF3a229T229delACC---11B.1.1770.000013
ORF3a229T229TacCacA11B.1.177.150.000631
ORF3a229T229NaCcaAc11B.1.177.210.000076
ORF3a229T229NaCcaAc11B.1.177.430.001477
ORF3a229T229IaCcaTc11B.1.177.580.001332
ORF3a229T229IaCcaTc11B.1.177.60.000977
ORF3a229T229delACC---11B.1.177.730.000566
ORF3a229T229IaCcaTc11B.1.177.80.000752
ORF3a229T229IaCcaTc11B.1.177.830.001481
ORF3a229T229IaCcaTc11B.1.177.850.005435
ORF3a229T229IaCcaTc11B.1.177.870.000728
ORF3a229T229IaCcaTc11B.1.1880.016667
ORF3a229T229TacCacT11B.1.1950.005025
ORF3a229T229delACC---11B.1.20.000009
ORF3a229T229AAccGcc11B.1.20.000009
ORF3a229T229NaCcaAc11B.1.20.000009
ORF3a229T229IaCcaTc11B.1.2320.000537
ORF3a229T229IaCcaTc11B.1.2340.000132
ORF3a229T229TacCacA11B.1.2340.000132
ORF3a229T229IaCcaTc11B.1.2390.001221
ORF3a229T229IaCcaTc11B.1.2810.021739
ORF3a229T229NaCcaAc11B.1.3110.000275
ORF3a229T229IaCcaTc11B.1.3490.000715
ORF3a229T229AAccGcc11B.1.3510.00003
ORF3a229T229IaCcaTc11B.1.36.10.00114
ORF3a229T229TacCacT11B.1.36.100.004785
ORF3a229T229IaCcaTc11B.1.36.170.000494
ORF3a229T229TacCacT11B.1.36.170.000494
ORF3a229T229del1Acc-cc11B.1.36.210.00216
ORF3a229T229IaCcaTc11B.1.36.290.000517
ORF3a229T229IaCcaTc11B.1.36.360.000602
ORF3a229T229IaCcaTc11B.1.36.380.001642
ORF3a229T229IaCcaTc11B.1.3630.012987
ORF3a229T229IaCcaTc11B.1.3750.00082
ORF3a229T229PAccCcc11B.1.3990.001934
ORF3a229T229IaCcaTc11B.1.4040.001302
ORF3a229T229IaCcaTc11B.1.4220.000812
ORF3a229T229TacCacA11B.1.4270.00005
ORF3a229T229NaCcaAc11B.1.4290.000024
ORF3a229T229IaCcaTc11B.1.4650.003802
ORF3a229T229TacCacA11B.1.466.20.000391
ORF3a229T229GACCGGT11B.1.4970.000315
ORF3a229T229IaCcaTc11B.1.4970.000315
ORF3a229T229IaCcaTc11B.1.4990.00105
ORF3a229T229IaCcaTc11B.1.5240.001406
ORF3a229T229TacCacT11B.1.5260.000024
ORF3a229T229IaCcaTc11B.1.5320.006211
ORF3a229T229IaCcaTc11B.1.5450.014493
ORF3a229T229AAccGcc11B.1.5600.00463
ORF3a229T229TacCacT11B.1.5770.000687
ORF3a229T229delACC---11B.1.5770.000687
ORF3a229T229IaCcaTc11B.1.5900.004545
ORF3a229T229TacCacT11B.1.617.10.000129
ORF3a229T229PAccCcc11B.1.617.20.000004
ORF3a229T229del1aCca-c11B.1.617.20.000004
ORF3a229T229IaCcaTc11B.1.617.30.002985
ORF3a229T229AAccGcc11B.1.6210.000089
ORF3a229T229IaCcaTc11B.1.6280.000352
ORF3a229T229IaCcaTc11B.1.6340.003425
ORF3a229T229TacCacA11B.1.6370.000073
ORF3a229T229IaCcaTc11B.390.002331
ORF3a229T229AAccGcc11C.10.002392
ORF3a229T229NaCcaAc11C.260.007353
ORF3a229T229IaCcaTc11C.36.30.000567
ORF3a229T229TacCacT11C.370.000116
ORF3a229T229IaCcaTc11P.1.10.10.00813
ORF3a229T229TacCacT11P.1.120.000484
ORF3a229T229IaCcaTc11P.1.120.000484
ORF3a229T229IaCcaTc11P.1.150.000232
ORF3a229T229IaCcaTc11P.1.170.000162
ORF3a229T229IaCcaTc11P.1.40.000977
ORF3a229T229HACcCAc11Q.10.000126
ORF3a229T229delACC---11Q.20.000613
ORF3a229T229delACC---11R.10.00009
ORF3a229T229IaCcaTc11W.40.001351