CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 223

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	223	T223I		nonsyn	aCt	aTt	35141	35137	0.999886	26059-26061
ORF3a	223	T223I		nonsyn	aCT	aTA	35141	4	0.000113827	26059-26061
ORF3a	223	T223N		nonsyn	aCt	aAt	2810	2810	1	26059-26061
ORF3a	223	T223T		syn	acT	acA	1107	612	0.552846	26059-26061
ORF3a	223	T223T		syn	acT	acC	1107	481	0.434508	26059-26061
ORF3a	223	T223T		syn	acT	acG	1107	14	0.0126468	26059-26061
ORF3a	223	T223S		nonsyn	Act	Tct	701	498	0.710414	26059-26061
ORF3a	223	T223S		nonsyn	aCt	aGt	701	203	0.289586	26059-26061
ORF3a	223	T223A		nonsyn	Act	Gct	502	501	0.998008	26059-26061
ORF3a	223	T223A		nonsyn	AcT	GcA	502	1	0.00199203	26059-26061
ORF3a	223	T223del		del	ACT	---	32	32	1	26059-26061
ORF3a	223	T223P		nonsyn	Act	Cct	30	30	1	26059-26061
ORF3a	223	T223F		nonsyn	ACt	TTt	12	12	1	26059-26061
ORF3a	223	T223V		nonsyn	ACt	GTt	6	6	1	26059-26061
ORF3a	223	T223del1		del	acT	ac-	3	2	0.666667	26059-26061
ORF3a	223	T223del1		del	aCt	a-t	3	1	0.333333	26059-26061
ORF3a	223	T223L		nonsyn	ACT	CTG	2	1	0.5	26059-26061
ORF3a	223	T223L		nonsyn	ACT	CTC	2	1	0.5	26059-26061
ORF3a	223	T223del2		del	ACT	--N	1	1	1	26059-26061
ORF3a	223	T223Y		nonsyn	ACt	TAt	1	1	1	26059-26061

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	223	T223I	aCt	aTt	35137	35141	All	0.00672
ORF3a	223	T223I	aCT	aTA	4	35141	All	0.000001
ORF3a	223	T223I	aCt	aTt	6900	6900	B.1.2	0.060757
ORF3a	223	T223I	aCt	aTt	4536	4536	AD.2	0.993212
ORF3a	223	T223I	aCt	aTt	3480	3480	B.1.1.7	0.003115
ORF3a	223	T223N	aCt	aAt	2810	2810	All	0.000537
ORF3a	223	T223I	aCt	aTt	2458	2458	AY.36	0.36431
ORF3a	223	T223I	aCt	aTt	1799	1799	AY.4	0.0028
ORF3a	223	T223I	aCt	aTt	1788	1791	B.1	0.016377
ORF3a	223	T223I	aCT	aTA	3	1791	B.1	0.000027
ORF3a	223	T223N	aCt	aAt	1253	1253	B.1.177.73	0.709513
ORF3a	223	T223I	aCt	aTt	1119	1119	B.1.1.216	0.996438
ORF3a	223	T223T	acT	acA	612	1107	All	0.000117
ORF3a	223	T223T	acT	acC	481	1107	All	0.000092
ORF3a	223	T223T	acT	acG	14	1107	All	0.000003
ORF3a	223	T223I	aCt	aTt	1051	1051	B.1.1.416	0.951131
ORF3a	223	T223I	aCt	aTt	784	784	B.1.36.27	0.598473
ORF3a	223	T223N	aCt	aAt	724	724	B.1.1.7	0.000648
ORF3a	223	T223I	aCt	aTt	718	718	AY.43	0.003181
ORF3a	223	T223S	Act	Tct	498	701	All	0.000095
ORF3a	223	T223S	aCt	aGt	203	701	All	0.000039
ORF3a	223	T223I	aCt	aTt	648	648	B.1.36	0.094543
ORF3a	223	T223I	aCt	aTt	634	634	B.1.1.433	0.903134
ORF3a	223	T223I	aCt	aTt	582	582	B.1.1	0.010558
ORF3a	223	T223A	Act	Gct	501	502	All	0.000096
ORF3a	223	T223A	AcT	GcA	1	502	All	0
ORF3a	223	T223I	aCt	aTt	432	432	B.1.111	0.507638
ORF3a	223	T223I	aCt	aTt	407	407	P.1.14	0.019455
ORF3a	223	T223N	aCt	aAt	338	338	B.1	0.003096
ORF3a	223	T223T	acT	acA	318	318	B.1.396	0.224418
ORF3a	223	T223I	aCt	aTt	310	310	B.1.177	0.004082
ORF3a	223	T223T	acT	acC	245	277	B.1.617.2	0.000923
ORF3a	223	T223T	acT	acA	30	277	B.1.617.2	0.000113
ORF3a	223	T223T	acT	acG	2	277	B.1.617.2	0.000008
ORF3a	223	T223I	aCt	aTt	271	271	AM.4	0.967857
ORF3a	223	T223I	aCt	aTt	269	269	P.1.16	0.100636
ORF3a	223	T223I	aCt	aTt	256	256	C.16	0.271474
ORF3a	223	T223I	aCt	aTt	254	254	AY.25	0.001528
ORF3a	223	T223I	aCt	aTt	243	243	B.1.617.2	0.000915
ORF3a	223	T223I	aCt	aTt	240	240	AD.1	0.987654
ORF3a	223	T223I	aCt	aTt	229	229	AY.103	0.001422
ORF3a	223	T223I	aCt	aTt	226	226	AY.3	0.002248
ORF3a	223	T223I	aCt	aTt	219	219	B.1.160	0.00683
ORF3a	223	T223I	aCt	aTt	218	218	B.1.1.519	0.008657
ORF3a	223	T223A	Act	Gct	216	216	B.1.279	0.11094
ORF3a	223	T223I	aCt	aTt	204	204	P.1	0.003214
ORF3a	223	T223I	aCt	aTt	160	160	B.1.243	0.011134
ORF3a	223	T223I	aCt	aTt	143	143	B.1.265	0.181703
ORF3a	223	T223I	aCt	aTt	135	135	AY.120	0.005019
ORF3a	223	T223I	aCt	aTt	131	131	B.1.337	0.731844
ORF3a	223	T223N	aCt	aAt	130	130	B.1.408	0.479705
ORF3a	223	T223I	aCt	aTt	127	127	B.1.1.294	0.160759
ORF3a	223	T223I	aCt	aTt	119	119	B.1.609	0.057047
ORF3a	223	T223I	aCt	aTt	115	115	AB.1	0.942623
ORF3a	223	T223S	aCt	aGt	113	113	AY.103	0.000702
ORF3a	223	T223I	aCt	aTt	113	113	B.1.1.315	0.957627
ORF3a	223	T223S	Act	Tct	100	109	B.1.1.7	0.00009
ORF3a	223	T223S	aCt	aGt	9	109	B.1.1.7	0.000008
ORF3a	223	T223N	aCt	aAt	109	109	B.1.177	0.001435
ORF3a	223	T223I	aCt	aTt	108	108	B.1.429	0.002541
ORF3a	223	T223I	aCt	aTt	107	107	AY.44	0.000651
ORF3a	223	T223T	acT	acA	100	106	B.1	0.000916
ORF3a	223	T223T	acT	acC	6	106	B.1	0.000055
ORF3a	223	T223I	aCt	aTt	106	106	B.1.1.428	1
ORF3a	223	T223S	Act	Tct	101	103	B.1.2	0.000889
ORF3a	223	T223S	aCt	aGt	2	103	B.1.2	0.000018
ORF3a	223	T223I	aCt	aTt	103	103	B.1.596	0.008975
ORF3a	223	T223S	Act	Tct	98	98	B.1.429	0.002306
ORF3a	223	T223I	aCt	aTt	97	97	B.1.1.1	0.031689
ORF3a	223	T223I	aCt	aTt	96	96	B.1.523	0.235294
ORF3a	223	T223T	acT	acC	92	93	B.1.221	0.006535
ORF3a	223	T223T	acT	acG	1	93	B.1.221	0.000071
ORF3a	223	T223I	aCt	aTt	93	93	B.1.577	0.063918
ORF3a	223	T223I	aCt	aTt	83	83	P.1.10	0.022366
ORF3a	223	T223A	Act	Gct	78	78	B.1.177.72	0.264407
ORF3a	223	T223I	aCt	aTt	78	78	B.1.466.2	0.030516
ORF3a	223	T223I	aCt	aTt	77	77	B.1.377	0.351598
ORF3a	223	T223I	aCt	aTt	75	75	B.1.398	0.223214
ORF3a	223	T223I	aCt	aTt	74	74	P.1.7	0.023627
ORF3a	223	T223I	aCt	aTt	71	71	B.1.1.33	0.029882
ORF3a	223	T223I	aCt	aTt	66	66	B.1.36.35	0.171875
ORF3a	223	T223I	aCt	aTt	63	63	AY.101	0.030897
ORF3a	223	T223A	Act	Gct	61	61	B.1.258.24	0.655914
ORF3a	223	T223I	aCt	aTt	57	57	B.1.539	1
ORF3a	223	T223I	aCt	aTt	50	50	AY.102	0.001326
ORF3a	223	T223T	acT	acC	39	49	B.1.1.7	0.000035
ORF3a	223	T223T	acT	acA	9	49	B.1.1.7	0.000008
ORF3a	223	T223T	acT	acG	1	49	B.1.1.7	0.000001
ORF3a	223	T223I	aCt	aTt	48	48	AY.20	0.001866
ORF3a	223	T223I	aCt	aTt	47	47	B.1.595	0.012265
ORF3a	223	T223N	aCt	aAt	46	46	C.31	0.821429
ORF3a	223	T223I	aCt	aTt	45	45	P.1.15	0.010455
ORF3a	223	T223S	aCt	aGt	42	44	AY.47	0.001306
ORF3a	223	T223S	Act	Tct	2	44	AY.47	0.000062
ORF3a	223	T223I	aCt	aTt	44	44	B.1.1.209	0.392857
ORF3a	223	T223I	aCt	aTt	44	44	B.1.36.22	0.05314
ORF3a	223	T223I	aCt	aTt	44	44	P.1.17.1	0.038495
ORF3a	223	T223I	aCt	aTt	43	43	M.1	1
ORF3a	223	T223I	aCt	aTt	42	42	AY.33	0.002805
ORF3a	223	T223I	aCt	aTt	41	41	B.1.558	0.187215
ORF3a	223	T223N	aCt	aAt	41	41	Q.1	0.005179
ORF3a	223	T223T	acT	acA	40	40	B.1.1.33	0.016835
ORF3a	223	T223I	aCt	aTt	40	40	B.1.1.404	0.634921
ORF3a	223	T223N	aCt	aAt	39	39	AY.119	0.001377
ORF3a	223	T223I	aCt	aTt	39	39	B.1.1.63	0.015046
ORF3a	223	T223I	aCt	aTt	38	38	AY.83	0.065517
ORF3a	223	T223I	aCt	aTt	38	38	B.1.396	0.026817
ORF3a	223	T223S	Act	Tct	38	38	B.1.427	0.001919
ORF3a	223	T223I	aCt	aTt	37	37	B.1.617.1	0.004772
ORF3a	223	T223I	aCt	aTt	36	36	AY.119	0.001271
ORF3a	223	T223I	aCt	aTt	36	36	B.1.351	0.00107
ORF3a	223	T223I	aCt	aTt	36	36	B.1.517.1	0.189474
ORF3a	223	T223I	aCt	aTt	34	34	B.1.1.28	0.010582
ORF3a	223	T223I	aCt	aTt	34	34	B.1.401	0.278689
ORF3a	223	T223del	ACT	---	32	32	All	0.000006
ORF3a	223	T223I	aCt	aTt	31	31	C.1	0.074163
ORF3a	223	T223P	Act	Cct	30	30	All	0.000006
ORF3a	223	T223I	aCt	aTt	30	30	AM.3	1
ORF3a	223	T223A	Act	Gct	30	30	B.1.1.7	0.000027
ORF3a	223	T223S	Act	Tct	29	29	B.1.258.24	0.311828
ORF3a	223	T223I	aCt	aTt	29	29	B.1.36.29	0.015003
ORF3a	223	T223I	aCt	aTt	29	29	B.1.36.38	0.047619
ORF3a	223	T223I	aCt	aTt	28	28	AY.39	0.000692
ORF3a	223	T223I	aCt	aTt	28	28	C.1.2	0.119149
ORF3a	223	T223I	aCt	aTt	27	27	B.1.1.153	0.029573
ORF3a	223	T223I	aCt	aTt	25	25	C.36	0.022769
ORF3a	223	T223I	aCt	aTt	24	24	B.1.526	0.000564
ORF3a	223	T223I	aCt	aTt	23	23	B.1.1.306	0.010083
ORF3a	223	T223I	aCt	aTt	23	23	C.37	0.002669
ORF3a	223	T223I	aCt	aTt	22	22	AD.2.1	1
ORF3a	223	T223I	aCt	aTt	22	22	AY.73	0.014637
ORF3a	223	T223S	Act	Tct	19	21	B.1	0.000174
ORF3a	223	T223S	aCt	aGt	2	21	B.1	0.000018
ORF3a	223	T223I	aCt	aTt	20	20	B.1.36.8	0.02
ORF3a	223	T223T	acT	acA	20	20	B.1.416.1	0.03125
ORF3a	223	T223I	aCt	aTt	19	19	AY.100	0.000874
ORF3a	223	T223I	aCt	aTt	19	19	AY.46.6	0.001372
ORF3a	223	T223T	acT	acA	15	19	B.1.2	0.000132
ORF3a	223	T223T	acT	acC	2	19	B.1.2	0.000018
ORF3a	223	T223T	acT	acG	2	19	B.1.2	0.000018
ORF3a	223	T223S	Act	Tct	15	19	B.1.243	0.001044
ORF3a	223	T223S	aCt	aGt	4	19	B.1.243	0.000278
ORF3a	223	T223I	aCt	aTt	19	19	P.2	0.003546
ORF3a	223	T223I	aCt	aTt	18	18	AY.42	0.000724
ORF3a	223	T223I	aCt	aTt	18	18	B.1.177.81	0.003408
ORF3a	223	T223I	aCt	aTt	18	18	B.1.391	0.020293
ORF3a	223	T223N	aCt	aAt	17	17	AY.4	0.000026
ORF3a	223	T223N	aCt	aAt	17	17	AY.46.6	0.001228
ORF3a	223	T223I	aCt	aTt	17	17	B.1.1.284	0.001826
ORF3a	223	T223A	Act	Gct	17	17	B.1.177	0.000224
ORF3a	223	T223S	Act	Tct	16	17	B.1.596	0.001394
ORF3a	223	T223S	aCt	aGt	1	17	B.1.596	0.000087
ORF3a	223	T223T	acT	acC	16	16	AE.8	0.007824
ORF3a	223	T223P	Act	Cct	16	16	AY.4	0.000025
ORF3a	223	T223T	acT	acC	16	16	AY.84	0.006999
ORF3a	223	T223I	aCt	aTt	16	16	B.1.1.174	0.054054
ORF3a	223	T223I	aCt	aTt	16	16	B.1.258	0.001065
ORF3a	223	T223I	aCt	aTt	16	16	B.1.456	0.052288
ORF3a	223	T223I	aCt	aTt	16	16	P.1.17	0.002588
ORF3a	223	T223I	aCt	aTt	15	15	A.2.5	0.007485
ORF3a	223	T223T	acT	acA	14	15	AY.119	0.000494
ORF3a	223	T223T	acT	acC	1	15	AY.119	0.000035
ORF3a	223	T223I	aCt	aTt	15	15	AY.29	0.000237
ORF3a	223	T223I	aCt	aTt	15	15	B.1.177.86	0.002752
ORF3a	223	T223I	aCt	aTt	15	15	B.1.565	0.012156
ORF3a	223	T223I	aCt	aTt	15	15	B.1.597	0.069444
ORF3a	223	T223I	aCt	aTt	14	14	AY.4.5	0.001505
ORF3a	223	T223I	aCt	aTt	14	14	AY.92	0.004022
ORF3a	223	T223I	aCt	aTt	14	14	B.1.1.222	0.002856
ORF3a	223	T223I	aCt	aTt	14	14	B.1.1.25	0.007959
ORF3a	223	T223I	aCt	aTt	14	14	B.1.177.15	0.008833
ORF3a	223	T223I	aCt	aTt	14	14	B.1.229	0.135922
ORF3a	223	T223A	Act	Gct	14	14	B.4.8	1
ORF3a	223	T223N	aCt	aAt	14	14	Q.3	0.00203
ORF3a	223	T223S	Act	Tct	13	13	B.1.1.519	0.000516
ORF3a	223	T223I	aCt	aTt	13	13	B.1.221	0.000923
ORF3a	223	T223I	aCt	aTt	13	13	B.1.240	0.002802
ORF3a	223	T223N	aCt	aAt	13	13	B.1.617.2	0.000049
ORF3a	223	T223I	aCt	aTt	12	12	A	0.004644
ORF3a	223	T223F	ACt	TTt	12	12	All	0.000002
ORF3a	223	T223I	aCt	aTt	12	12	AY.23	0.000837
ORF3a	223	T223I	aCt	aTt	12	12	AY.4.2.1	0.001788
ORF3a	223	T223I	aCt	aTt	12	12	B.1.260	0.040134
ORF3a	223	T223I	aCt	aTt	12	12	B.1.621	0.001062
ORF3a	223	T223T	acT	acC	11	11	AY.43	0.000049
ORF3a	223	T223I	aCt	aTt	11	11	B.1.36.36	0.006623
ORF3a	223	T223I	aCt	aTt	10	10	AY.117	0.000845
ORF3a	223	T223I	aCt	aTt	10	10	AY.118	0.000626
ORF3a	223	T223T	acT	acC	6	10	AY.4	0.000009
ORF3a	223	T223T	acT	acA	4	10	AY.4	0.000006
ORF3a	223	T223I	aCt	aTt	10	10	AY.4.2	0.000217
ORF3a	223	T223I	aCt	aTt	10	10	AY.46	0.001041
ORF3a	223	T223I	aCt	aTt	10	10	AY.47	0.000311
ORF3a	223	T223I	aCt	aTt	10	10	AY.5	0.000206
ORF3a	223	T223I	aCt	aTt	10	10	B.1.234	0.001319
ORF3a	223	T223T	acT	acC	10	10	B.1.429	0.000235
ORF3a	223	T223I	aCt	aTt	10	10	B.1.468	0.057143
ORF3a	223	T223I	aCt	aTt	9	9	AM.1	1
ORF3a	223	T223I	aCt	aTt	9	9	AM.2	1
ORF3a	223	T223I	aCt	aTt	9	9	B.1.1.39	0.004587
ORF3a	223	T223I	aCt	aTt	9	9	B.1.1.526	0.031915
ORF3a	223	T223I	aCt	aTt	9	9	B.1.177.21	0.000688
ORF3a	223	T223I	aCt	aTt	9	9	B.1.232	0.004836
ORF3a	223	T223I	aCt	aTt	9	9	B.1.427	0.000454
ORF3a	223	T223I	aCt	aTt	8	8	AY.111	0.001465
ORF3a	223	T223I	aCt	aTt	8	8	AY.121	0.001083
ORF3a	223	T223N	aCt	aAt	8	8	AY.39	0.000198
ORF3a	223	T223S	aCt	aGt	8	8	AY.54	0.000763
ORF3a	223	T223N	aCt	aAt	8	8	B.1.1	0.000145
ORF3a	223	T223A	Act	Gct	8	8	B.1.1.1	0.002614
ORF3a	223	T223I	aCt	aTt	8	8	B.1.1.214	0.000444
ORF3a	223	T223A	Act	Gct	8	8	B.1.1.33	0.003367
ORF3a	223	T223I	aCt	aTt	8	8	B.1.1.357	1
ORF3a	223	T223I	aCt	aTt	8	8	B.1.199	0.033058
ORF3a	223	T223S	Act	Tct	8	8	B.1.234	0.001056
ORF3a	223	T223A	Act	Gct	8	8	B.1.351	0.000238
ORF3a	223	T223I	aCt	aTt	8	8	B.1.408	0.02952
ORF3a	223	T223S	Act	Tct	8	8	B.1.561	0.003176
ORF3a	223	T223T	acT	acA	8	8	B.1.596	0.000697
ORF3a	223	T223I	aCt	aTt	8	8	Q.8	0.001319
ORF3a	223	T223T	acT	acC	4	7	AY.25	0.000024
ORF3a	223	T223T	acT	acG	2	7	AY.25	0.000012
ORF3a	223	T223T	acT	acA	1	7	AY.25	0.000006
ORF3a	223	T223I	aCt	aTt	7	7	AY.26	0.000198
ORF3a	223	T223A	Act	Gct	7	7	AY.4	0.000011
ORF3a	223	T223I	aCt	aTt	7	7	AY.54	0.000667
ORF3a	223	T223I	aCt	aTt	7	7	B.1.177.44	0.003633
ORF3a	223	T223I	aCt	aTt	7	7	B.1.36.17	0.003458
ORF3a	223	T223I	aCt	aTt	7	7	B.1.371	0.007856
ORF3a	223	T223I	aCt	aTt	7	7	B.1.533	0.067308
ORF3a	223	T223I	aCt	aTt	7	7	B.1.582	0.003435
ORF3a	223	T223del	ACT	---	6	6		0.333333
ORF3a	223	T223V	ACt	GTt	6	6	All	0.000001
ORF3a	223	T223I	aCt	aTt	6	6	AY.35	0.001398
ORF3a	223	T223P	Act	Cct	6	6	AY.39	0.000148
ORF3a	223	T223I	aCt	aTt	6	6	AY.39.1	0.000238
ORF3a	223	T223T	acT	acA	3	6	AY.44	0.000018
ORF3a	223	T223T	acT	acC	3	6	AY.44	0.000018
ORF3a	223	T223I	aCt	aTt	6	6	AY.45	0.00073
ORF3a	223	T223I	aCt	aTt	6	6	AY.71	0.00285
ORF3a	223	T223I	aCt	aTt	6	6	AY.84	0.002625
ORF3a	223	T223I	aCt	aTt	6	6	AY.98.1	0.000291
ORF3a	223	T223I	aCt	aTt	6	6	AY.99.2	0.000553
ORF3a	223	T223T	acT	acA	6	6	B.1.1	0.000109
ORF3a	223	T223I	aCt	aTt	6	6	B.1.1.220	0.011152
ORF3a	223	T223I	aCt	aTt	6	6	B.1.1.351	0.01676
ORF3a	223	T223I	aCt	aTt	6	6	B.1.1.525	0.032787
ORF3a	223	T223I	aCt	aTt	6	6	B.1.139	0.004399
ORF3a	223	T223I	aCt	aTt	6	6	B.1.36.19	0.055556
ORF3a	223	T223F	ACt	TTt	6	6	B.1.377	0.027397
ORF3a	223	T223I	aCt	aTt	6	6	B.1.400	0.002574
ORF3a	223	T223S	Act	Tct	6	6	B.1.404	0.007812
ORF3a	223	T223I	aCt	aTt	6	6	B.1.562	0.111111
ORF3a	223	T223I	aCt	aTt	6	6	B.1.628	0.002114
ORF3a	223	T223I	aCt	aTt	6	6	D.2	0.00045
ORF3a	223	T223I	aCt	aTt	5	5	AY.61	0.000524
ORF3a	223	T223I	aCt	aTt	5	5	AY.65	0.002665
ORF3a	223	T223I	aCt	aTt	5	5	B	0.000639
ORF3a	223	T223I	aCt	aTt	5	5	B.1.1.317	0.002058
ORF3a	223	T223I	aCt	aTt	5	5	B.1.1.329	0.019231
ORF3a	223	T223I	aCt	aTt	5	5	B.1.1.403	0.128205
ORF3a	223	T223I	aCt	aTt	5	5	B.1.1.58	0.026882
ORF3a	223	T223I	aCt	aTt	5	5	B.1.145	0.263158
ORF3a	223	T223I	aCt	aTt	5	5	B.1.177.75	0.005203
ORF3a	223	T223I	aCt	aTt	5	5	B.1.192	0.046296
ORF3a	223	T223I	aCt	aTt	5	5	B.1.214	0.018315
ORF3a	223	T223I	aCt	aTt	5	5	B.1.349	0.003574
ORF3a	223	T223I	aCt	aTt	5	5	B.1.525	0.000566
ORF3a	223	T223S	Act	Tct	5	5	B.1.609	0.002397
ORF3a	223	T223S	Act	Tct	5	5	B.1.631	0.016835
ORF3a	223	T223T	acT	acA	3	5	P.1	0.000047
ORF3a	223	T223T	acT	acC	2	5	P.1	0.000032
ORF3a	223	T223S	aCt	aGt	4	5	R.1	0.00036
ORF3a	223	T223S	Act	Tct	1	5	R.1	0.00009
ORF3a	223	T223V	ACt	GTt	4	4	AM.4	0.014286
ORF3a	223	T223I	aCt	aTt	4	4	AY.113	0.00057
ORF3a	223	T223I	aCt	aTt	4	4	AY.114	0.000924
ORF3a	223	T223I	aCt	aTt	4	4	AY.14	0.000352
ORF3a	223	T223I	aCt	aTt	4	4	AY.16.1	0.00188
ORF3a	223	T223N	aCt	aAt	4	4	AY.25	0.000024
ORF3a	223	T223T	acT	acG	3	4	AY.3	0.00003
ORF3a	223	T223T	acT	acA	1	4	AY.3	0.00001
ORF3a	223	T223I	aCt	aTt	4	4	AY.32	0.00213
ORF3a	223	T223I	aCt	aTt	4	4	AY.34	0.000388
ORF3a	223	T223I	aCt	aTt	4	4	AY.69	0.000747
ORF3a	223	T223N	aCt	aAt	4	4	AY.75	0.000224
ORF3a	223	T223I	aCt	aTt	4	4	AY.96	0.008299
ORF3a	223	T223A	Act	Gct	4	4	B.1	0.000037
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.10	0.004459
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.170	0.004988
ORF3a	223	T223S	aCt	aGt	4	4	B.1.1.214	0.000222
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.268	0.059701
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.309	0.023392
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.335	0.051948
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.37	0.000771
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.372	0.002755
ORF3a	223	T223N	aCt	aAt	4	4	B.1.1.389	0.024242
ORF3a	223	T223I	aCt	aTt	4	4	B.1.1.409	0.011331
ORF3a	223	T223P	Act	Cct	4	4	B.1.1.7	0.000004
ORF3a	223	T223I	aCt	aTt	4	4	B.1.177.16	0.002658
ORF3a	223	T223F	ACt	TTt	4	4	B.1.2	0.000035
ORF3a	223	T223I	aCt	aTt	4	4	B.1.201	0.022727
ORF3a	223	T223I	aCt	aTt	4	4	B.1.210	0.008529
ORF3a	223	T223I	aCt	aTt	4	4	B.1.336	0.009756
ORF3a	223	T223I	aCt	aTt	4	4	B.1.36.16	0.005698
ORF3a	223	T223N	aCt	aAt	4	4	B.1.36.19	0.037037
ORF3a	223	T223I	aCt	aTt	4	4	B.1.36.24	0.024691
ORF3a	223	T223I	aCt	aTt	4	4	B.1.462	0.028986
ORF3a	223	T223del	ACT	---	4	4	B.1.525	0.000453
ORF3a	223	T223I	aCt	aTt	4	4	B.1.538	0.032258
ORF3a	223	T223S	Act	Tct	4	4	B.1.551	0.005161
ORF3a	223	T223I	aCt	aTt	4	4	B.1.564	0.001704
ORF3a	223	T223A	Act	Gct	4	4	B.1.617.2	0.000015
ORF3a	223	T223S	aCt	aGt	4	4	B.1.617.2	0.000015
ORF3a	223	T223I	aCt	aTt	4	4	N.5	0.007067
ORF3a	223	T223I	aCt	aTt	4	4	Q.1	0.000505
ORF3a	223	T223del1	acT	ac-	2	3	All	0
ORF3a	223	T223del1	aCt	a-t	1	3	All	0
ORF3a	223	T223N	aCt	aAt	3	3	AY.103	0.000019
ORF3a	223	T223T	acT	acC	2	3	AY.103	0.000012
ORF3a	223	T223T	acT	acA	1	3	AY.103	0.000006
ORF3a	223	T223I	aCt	aTt	3	3	AY.109	0.002219
ORF3a	223	T223I	aCt	aTt	3	3	AY.16	0.001139
ORF3a	223	T223A	Act	Gct	3	3	AY.29	0.000047
ORF3a	223	T223I	aCt	aTt	3	3	AY.3.1	0.000256
ORF3a	223	T223del	ACT	---	3	3	AY.43	0.000013
ORF3a	223	T223N	aCt	aAt	3	3	AY.44	0.000018
ORF3a	223	T223A	Act	Gct	3	3	AY.44	0.000018
ORF3a	223	T223I	aCt	aTt	3	3	AY.62	0.001307
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.261	0.025862
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.305	0.011583
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.318	0.000905
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.368	0.009259
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.432	0.003797
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.459	0.046154
ORF3a	223	T223I	aCt	aTt	3	3	B.1.1.46	0.0131
ORF3a	223	T223del	ACT	---	3	3	B.1.1.7	0.000003
ORF3a	223	T223I	aCt	aTt	3	3	B.1.177.10	0.002634
ORF3a	223	T223I	aCt	aTt	3	3	B.1.177.12	0.000455
ORF3a	223	T223I	aCt	aTt	3	3	B.1.177.4	0.000633
ORF3a	223	T223I	aCt	aTt	3	3	B.1.177.7	0.000495
ORF3a	223	T223I	aCt	aTt	3	3	B.1.177.73	0.001699
ORF3a	223	T223I	aCt	aTt	3	3	B.1.214.2	0.001799
ORF3a	223	T223I	aCt	aTt	3	3	B.1.237	0.014925
ORF3a	223	T223S	Act	Tct	3	3	B.1.311	0.000824
ORF3a	223	T223I	aCt	aTt	3	3	B.1.311	0.000824
ORF3a	223	T223A	Act	Gct	3	3	B.1.36.8	0.003
ORF3a	223	T223I	aCt	aTt	3	3	B.1.369	0.000856
ORF3a	223	T223I	aCt	aTt	3	3	B.1.389	0.003006
ORF3a	223	T223I	aCt	aTt	3	3	B.1.459	0.012245
ORF3a	223	T223S	Act	Tct	3	3	B.1.526	0.000071
ORF3a	223	T223S	Act	Tct	3	3	B.1.595	0.000783
ORF3a	223	T223I	aCt	aTt	3	3	B.1.9.5	0.017045
ORF3a	223	T223A	Act	Gct	3	3	C.13	0.076923
ORF3a	223	T223I	aCt	aTt	3	3	C.14	0.012987
ORF3a	223	T223A	Act	Gct	3	3	C.6	0.111111
ORF3a	223	T223N	aCt	aAt	3	3	P.1	0.000047
ORF3a	223	T223I	aCt	aTt	3	3	Q.3	0.000435
ORF3a	223	T223I	aCt	aTt	3	3	Q.6	0.019868
ORF3a	223	T223I	aCt	aTt	2	2	A.23.1	0.001408
ORF3a	223	T223I	aCt	aTt	2	2	A.27	0.003311
ORF3a	223	T223L	ACT	CTC	1	2	All	0
ORF3a	223	T223L	ACT	CTG	1	2	All	0
ORF3a	223	T223T	acT	acC	2	2	AY.111	0.000366
ORF3a	223	T223I	aCt	aTt	2	2	AY.116	0.000574
ORF3a	223	T223T	acT	acG	2	2	AY.120	0.000074
ORF3a	223	T223I	aCt	aTt	2	2	AY.120.2	0.002571
ORF3a	223	T223I	aCt	aTt	2	2	AY.27	0.000129
ORF3a	223	T223I	aCt	aTt	2	2	AY.29.1	0.000441
ORF3a	223	T223T	acT	acA	2	2	AY.30	0.000791
ORF3a	223	T223T	acT	acA	2	2	AY.4.2	0.000043
ORF3a	223	T223S	aCt	aGt	2	2	AY.44	0.000012
ORF3a	223	T223T	acT	acC	2	2	AY.5	0.000041
ORF3a	223	T223I	aCt	aTt	2	2	AY.50	0.001599
ORF3a	223	T223T	acT	acA	2	2	AY.54	0.000191
ORF3a	223	T223T	acT	acC	2	2	AY.67	0.000929
ORF3a	223	T223I	aCt	aTt	2	2	AY.7	0.000392
ORF3a	223	T223I	aCt	aTt	2	2	AY.75	0.000112
ORF3a	223	T223I	aCt	aTt	2	2	AY.82	0.002714
ORF3a	223	T223I	aCt	aTt	2	2	AY.85	0.000854
ORF3a	223	T223I	aCt	aTt	2	2	AY.95	0.001522
ORF3a	223	T223I	aCt	aTt	2	2	AY.98	0.000158
ORF3a	223	T223T	acT	acG	1	2	AY.98	0.000079
ORF3a	223	T223T	acT	acA	1	2	AY.98	0.000079
ORF3a	223	T223A	Act	Gct	2	2	B	0.000256
ORF3a	223	T223F	ACt	TTt	2	2	B.1.1	0.000036
ORF3a	223	T223N	aCt	aAt	2	2	B.1.1.1	0.000653
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.169	0.036364
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.189	0.003026
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.196	0.011429
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.219	0.01
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.225	0.014388
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.27	0.011299
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.279	0.002242
ORF3a	223	T223A	Act	Gct	2	2	B.1.1.28	0.000622
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.291	0.001485
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.311	0.000716
ORF3a	223	T223S	Act	Tct	2	2	B.1.1.316	0.00185
ORF3a	223	T223I	aCt	aTt	2	2	B.1.1.326	0.003521
ORF3a	223	T223S	Act	Tct	2	2	B.1.1.432	0.002532
ORF3a	223	T223I	aCt	aTt	2	2	B.1.116	0.023256
ORF3a	223	T223I	aCt	aTt	2	2	B.1.142	0.005797
ORF3a	223	T223I	aCt	aTt	2	2	B.1.157	0.00597
ORF3a	223	T223N	aCt	aAt	2	2	B.1.160.20	0.017857
ORF3a	223	T223S	aCt	aGt	2	2	B.1.177	0.000026
ORF3a	223	T223T	acT	acA	2	2	B.1.177.23	0.006472
ORF3a	223	T223I	aCt	aTt	2	2	B.1.177.3	0.015267
ORF3a	223	T223I	aCt	aTt	2	2	B.1.177.76	0.004988
ORF3a	223	T223I	aCt	aTt	2	2	B.1.195	0.01005
ORF3a	223	T223A	Act	Gct	2	2	B.1.2	0.000018
ORF3a	223	T223del1	aCt	a-t	1	2	B.1.2	0.000009
ORF3a	223	T223del1	acT	ac-	1	2	B.1.2	0.000009
ORF3a	223	T223N	aCt	aAt	2	2	B.1.210	0.004264
ORF3a	223	T223T	acT	acA	2	2	B.1.243	0.000139
ORF3a	223	T223A	Act	Gct	2	2	B.1.258	0.000133
ORF3a	223	T223I	aCt	aTt	2	2	B.1.315	0.012121
ORF3a	223	T223I	aCt	aTt	2	2	B.1.351.5	0.001199
ORF3a	223	T223A	Act	Gct	2	2	B.1.36	0.000292
ORF3a	223	T223I	aCt	aTt	2	2	B.1.36.10	0.009569
ORF3a	223	T223I	aCt	aTt	2	2	B.1.36.31	0.003503
ORF3a	223	T223I	aCt	aTt	2	2	B.1.367	0.001585
ORF3a	223	T223I	aCt	aTt	2	2	B.1.375	0.001639
ORF3a	223	T223I	aCt	aTt	2	2	B.1.395	0.014085
ORF3a	223	T223I	aCt	aTt	2	2	B.1.399	0.003868
ORF3a	223	T223I	aCt	aTt	2	2	B.1.428	0.002041
ORF3a	223	T223I	aCt	aTt	2	2	B.1.436	0.002058
ORF3a	223	T223I	aCt	aTt	2	2	B.1.471	0.005464
ORF3a	223	T223A	Act	Gct	2	2	B.1.526	0.000047
ORF3a	223	T223I	aCt	aTt	2	2	B.1.527	0.007407
ORF3a	223	T223I	aCt	aTt	2	2	B.1.530	0.014286
ORF3a	223	T223S	Act	Tct	2	2	B.1.582	0.000981
ORF3a	223	T223T	acT	acA	2	2	B.1.595	0.000522
ORF3a	223	T223I	aCt	aTt	2	2	B.1.623	0.001073
ORF3a	223	T223I	aCt	aTt	2	2	B.1.637	0.000146
ORF3a	223	T223I	aCt	aTt	2	2	B.1.78	0.017094
ORF3a	223	T223N	aCt	aAt	2	2	B.1.9.5	0.011364
ORF3a	223	T223I	aCt	aTt	2	2	B.1.93	0.001867
ORF3a	223	T223I	aCt	aTt	2	2	B.55	0.0059
ORF3a	223	T223I	aCt	aTt	2	2	C.23	0.011628
ORF3a	223	T223I	aCt	aTt	2	2	C.36.3.1	0.005435
ORF3a	223	T223I	aCt	aTt	2	2	L.3	0.007092
ORF3a	223	T223I	aCt	aTt	2	2	N.3	0.011628
ORF3a	223	T223I	aCt	aTt	2	2	N.9	0.011905
ORF3a	223	T223A	Act	Gct	2	2	P.1	0.000032
ORF3a	223	T223I	aCt	aTt	2	2	P.1.2	0.002312
ORF3a	223	T223S	Act	Tct	2	2	P.2	0.000373
ORF3a	223	T223I	aCt	aTt	2	2	P.3	0.00319
ORF3a	223	T223A	AcT	GcA	1	2	Q.1	0.000126
ORF3a	223	T223A	Act	Gct	1	2	Q.1	0.000126
ORF3a	223	T223I	aCt	aTt	2	2	Q.4	0.00091
ORF3a	223	T223I	aCt	aTt	2	2	R.1	0.00018
ORF3a	223	T223N	aCt	aAt	1	1	A	0.000387
ORF3a	223	T223I	aCt	aTt	1	1	A.19	0.009434
ORF3a	223	T223I	aCt	aTt	1	1	A.25	0.018182
ORF3a	223	T223Y	ACt	TAt	1	1	All	0
ORF3a	223	T223del2	ACT	--N	1	1	All	0
ORF3a	223	T223I	aCt	aTt	1	1	AT.1	0.005128
ORF3a	223	T223I	aCt	aTt	1	1	AU.1	0.001266
ORF3a	223	T223S	aCt	aGt	1	1	AY.100	0.000046
ORF3a	223	T223N	aCt	aAt	1	1	AY.102	0.000027
ORF3a	223	T223T	acT	acC	1	1	AY.102	0.000027
ORF3a	223	T223I	aCt	aTt	1	1	AY.104	0.001984
ORF3a	223	T223I	aCt	aTt	1	1	AY.110	0.000113
ORF3a	223	T223V	ACt	GTt	1	1	AY.119	0.000035
ORF3a	223	T223I	aCt	aTt	1	1	AY.12	0.000316
ORF3a	223	T223S	aCt	aGt	1	1	AY.120	0.000037
ORF3a	223	T223del	ACT	---	1	1	AY.120	0.000037
ORF3a	223	T223P	Act	Cct	1	1	AY.121	0.000135
ORF3a	223	T223N	aCt	aAt	1	1	AY.16	0.00038
ORF3a	223	T223T	acT	acC	1	1	AY.16.1	0.00047
ORF3a	223	T223T	acT	acA	1	1	AY.2	0.000356
ORF3a	223	T223A	Act	Gct	1	1	AY.20	0.000039
ORF3a	223	T223N	aCt	aAt	1	1	AY.20	0.000039
ORF3a	223	T223N	aCt	aAt	1	1	AY.23	0.00007
ORF3a	223	T223I	aCt	aTt	1	1	AY.23.1	0.000417
ORF3a	223	T223A	Act	Gct	1	1	AY.25	0.000006
ORF3a	223	T223del1	acT	ac-	1	1	AY.25	0.000006
ORF3a	223	T223L	ACT	CTC	1	1	AY.3	0.00001
ORF3a	223	T223N	aCt	aAt	1	1	AY.3.1	0.000085
ORF3a	223	T223I	aCt	aTt	1	1	AY.30	0.000396
ORF3a	223	T223I	aCt	aTt	1	1	AY.31	0.018519
ORF3a	223	T223T	acT	acA	1	1	AY.32	0.000532
ORF3a	223	T223I	aCt	aTt	1	1	AY.34.1	0.00051
ORF3a	223	T223S	aCt	aGt	1	1	AY.38	0.000499
ORF3a	223	T223A	Act	Gct	1	1	AY.39	0.000025
ORF3a	223	T223T	acT	acC	1	1	AY.39	0.000025
ORF3a	223	T223T	acT	acA	1	1	AY.39.1	0.00004
ORF3a	223	T223N	aCt	aAt	1	1	AY.39.2	0.001541
ORF3a	223	T223I	aCt	aTt	1	1	AY.40	0.000964
ORF3a	223	T223S	aCt	aGt	1	1	AY.43	0.000004
ORF3a	223	T223T	acT	acC	1	1	AY.45	0.000122
ORF3a	223	T223A	Act	Gct	1	1	AY.45	0.000122
ORF3a	223	T223A	Act	Gct	1	1	AY.46	0.000104
ORF3a	223	T223S	aCt	aGt	1	1	AY.46	0.000104
ORF3a	223	T223T	acT	acA	1	1	AY.46	0.000104
ORF3a	223	T223I	aCt	aTt	1	1	AY.46.1	0.001027
ORF3a	223	T223I	aCt	aTt	1	1	AY.46.2	0.000635
ORF3a	223	T223I	aCt	aTt	1	1	AY.46.4	0.000165
ORF3a	223	T223P	Act	Cct	1	1	AY.46.6	0.000072
ORF3a	223	T223del	ACT	---	1	1	AY.46.6	0.000072
ORF3a	223	T223T	acT	acA	1	1	AY.49	0.003195
ORF3a	223	T223I	aCt	aTt	1	1	AY.5.3	0.000337
ORF3a	223	T223T	acT	acC	1	1	AY.5.3	0.000337
ORF3a	223	T223I	aCt	aTt	1	1	AY.53	0.000288
ORF3a	223	T223I	aCt	aTt	1	1	AY.55	0.000917
ORF3a	223	T223N	aCt	aAt	1	1	AY.57	0.000656
ORF3a	223	T223I	aCt	aTt	1	1	AY.59	0.00053
ORF3a	223	T223T	acT	acC	1	1	AY.6	0.000041
ORF3a	223	T223I	aCt	aTt	1	1	AY.60	0.000938
ORF3a	223	T223I	aCt	aTt	1	1	AY.63	0.000387
ORF3a	223	T223I	aCt	aTt	1	1	AY.64	0.000595
ORF3a	223	T223del	ACT	---	1	1	AY.67	0.000464
ORF3a	223	T223del	ACT	---	1	1	AY.68	0.000274
ORF3a	223	T223T	acT	acC	1	1	AY.70	0.000209
ORF3a	223	T223T	acT	acC	1	1	AY.74	0.000116
ORF3a	223	T223T	acT	acC	1	1	AY.75.1	0.00018
ORF3a	223	T223I	aCt	aTt	1	1	AY.75.1	0.00018
ORF3a	223	T223I	aCt	aTt	1	1	AY.77	0.001127
ORF3a	223	T223del2	ACT	--N	1	1	AY.85	0.000427
ORF3a	223	T223I	aCt	aTt	1	1	AY.86	0.00083
ORF3a	223	T223I	aCt	aTt	1	1	AY.87	0.000833
ORF3a	223	T223I	aCt	aTt	1	1	AY.9	0.000068
ORF3a	223	T223I	aCt	aTt	1	1	AY.9.1	0.000084
ORF3a	223	T223N	aCt	aAt	1	1	AY.9.2	0.000037
ORF3a	223	T223I	aCt	aTt	1	1	AY.9.2	0.000037
ORF3a	223	T223I	aCt	aTt	1	1	AY.90	0.000684
ORF3a	223	T223T	acT	acC	1	1	AY.92	0.000287
ORF3a	223	T223P	Act	Cct	1	1	AY.98	0.000079
ORF3a	223	T223T	acT	acC	1	1	AY.99	0.001049
ORF3a	223	T223S	Act	Tct	1	1	AZ.3	0.00152
ORF3a	223	T223V	ACt	GTt	1	1	B.1	0.000009
ORF3a	223	T223del	ACT	---	1	1	B.1	0.000009
ORF3a	223	T223A	Act	Gct	1	1	B.1.1	0.000018
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.121	0.002427
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.135	0.004695
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.137	0.0125
ORF3a	223	T223del	ACT	---	1	1	B.1.1.139	0.022727
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.159	0.004673
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.160	0.02381
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.176	0.000439
ORF3a	223	T223N	aCt	aAt	1	1	B.1.1.194	0.00495
ORF3a	223	T223T	acT	acA	1	1	B.1.1.201	0.02439
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.217	0.003636
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.226	0.005814
ORF3a	223	T223S	Act	Tct	1	1	B.1.1.231	0.003096
ORF3a	223	T223N	aCt	aAt	1	1	B.1.1.25	0.000569
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.253	0.002506
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.262	0.015152
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.277	0.000759
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.301	0.001179
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.304	0.002809
ORF3a	223	T223N	aCt	aAt	1	1	B.1.1.306	0.000438
ORF3a	223	T223del	ACT	---	1	1	B.1.1.311	0.000358
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.316	0.000925
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.319	0.017544
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.325	0.025641
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.334	0.016393
ORF3a	223	T223T	acT	acA	1	1	B.1.1.335	0.012987
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.336	0.016667
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.356	0.008547
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.370	0.012658
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.371	0.010417
ORF3a	223	T223A	Act	Gct	1	1	B.1.1.372	0.000689
ORF3a	223	T223T	acT	acA	1	1	B.1.1.388	0.045455
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.393	0.111111
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.397	0.002252
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.411	0.014706
ORF3a	223	T223S	Act	Tct	1	1	B.1.1.434	0.000349
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.448	0.002033
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.484	0.1
ORF3a	223	T223T	acT	acC	1	1	B.1.1.5	0.008333
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.507	0.008696
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.518	0.006329
ORF3a	223	T223T	acT	acA	1	1	B.1.1.519	0.00004
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.523	0.001563
ORF3a	223	T223I	aCt	aTt	1	1	B.1.1.95	0.019608
ORF3a	223	T223N	aCt	aAt	1	1	B.1.127	0.002198
ORF3a	223	T223I	aCt	aTt	1	1	B.1.128	0.000635
ORF3a	223	T223I	aCt	aTt	1	1	B.1.140	0.018868
ORF3a	223	T223I	aCt	aTt	1	1	B.1.147	0.000756
ORF3a	223	T223A	Act	Gct	1	1	B.1.157	0.002985
ORF3a	223	T223I	aCt	aTt	1	1	B.1.158	0.02381
ORF3a	223	T223I	aCt	aTt	1	1	B.1.160.22	0.006757
ORF3a	223	T223A	Act	Gct	1	1	B.1.160.29	0.004219
ORF3a	223	T223I	aCt	aTt	1	1	B.1.160.31	0.008065
ORF3a	223	T223I	aCt	aTt	1	1	B.1.164	0.014925
ORF3a	223	T223del	ACT	---	1	1	B.1.177	0.000013
ORF3a	223	T223T	acT	acC	1	1	B.1.177	0.000013
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.17	0.000821
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.35	0.000691
ORF3a	223	T223N	aCt	aAt	1	1	B.1.177.42	0.000894
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.57	0.000281
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.60	0.000218
ORF3a	223	T223N	aCt	aAt	1	1	B.1.177.63	0.002703
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.65	0.000665
ORF3a	223	T223del	ACT	---	1	1	B.1.177.73	0.000566
ORF3a	223	T223T	acT	acC	1	1	B.1.177.83	0.001481
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.83	0.001481
ORF3a	223	T223I	aCt	aTt	1	1	B.1.177.87	0.000728
ORF3a	223	T223I	aCt	aTt	1	1	B.1.189	0.004292
ORF3a	223	T223del	ACT	---	1	1	B.1.2	0.000009
ORF3a	223	T223S	Act	Tct	1	1	B.1.203	0.0625
ORF3a	223	T223I	aCt	aTt	1	1	B.1.203	0.0625
ORF3a	223	T223I	aCt	aTt	1	1	B.1.206	0.000816
ORF3a	223	T223T	acT	acA	1	1	B.1.206	0.000816
ORF3a	223	T223I	aCt	aTt	1	1	B.1.214.3	0.007143
ORF3a	223	T223N	aCt	aAt	1	1	B.1.221	0.000071
ORF3a	223	T223I	aCt	aTt	1	1	B.1.221.3	0.000833
ORF3a	223	T223T	acT	acA	1	1	B.1.234	0.000132
ORF3a	223	T223S	Act	Tct	1	1	B.1.240	0.000216
ORF3a	223	T223T	acT	acC	1	1	B.1.240.1	0.025
ORF3a	223	T223S	Act	Tct	1	1	B.1.241	0.000812
ORF3a	223	T223I	aCt	aTt	1	1	B.1.242	0.018868
ORF3a	223	T223S	Act	Tct	1	1	B.1.243.1	0.022222
ORF3a	223	T223del	ACT	---	1	1	B.1.258	0.000067
ORF3a	223	T223T	acT	acC	1	1	B.1.258	0.000067
ORF3a	223	T223I	aCt	aTt	1	1	B.1.258.12	0.007874
ORF3a	223	T223I	aCt	aTt	1	1	B.1.258.17	0.000104
ORF3a	223	T223I	aCt	aTt	1	1	B.1.263	0.047619
ORF3a	223	T223I	aCt	aTt	1	1	B.1.319	0.003049
ORF3a	223	T223T	acT	acC	1	1	B.1.319	0.003049
ORF3a	223	T223N	aCt	aAt	1	1	B.1.323	0.020833
ORF3a	223	T223I	aCt	aTt	1	1	B.1.324	0.001605
ORF3a	223	T223I	aCt	aTt	1	1	B.1.340	0.004292
ORF3a	223	T223T	acT	acA	1	1	B.1.349	0.000715
ORF3a	223	T223I	aCt	aTt	1	1	B.1.350	0.002933
ORF3a	223	T223N	aCt	aAt	1	1	B.1.351	0.00003
ORF3a	223	T223A	Act	Gct	1	1	B.1.36.1	0.00114
ORF3a	223	T223A	Act	Gct	1	1	B.1.36.10	0.004785
ORF3a	223	T223I	aCt	aTt	1	1	B.1.36.18	0.00042
ORF3a	223	T223I	aCt	aTt	1	1	B.1.36.33	0.007576
ORF3a	223	T223T	acT	acA	1	1	B.1.36.36	0.000602
ORF3a	223	T223S	aCt	aGt	1	1	B.1.36.36	0.000602
ORF3a	223	T223I	aCt	aTt	1	1	B.1.36.7	0.004
ORF3a	223	T223I	aCt	aTt	1	1	B.1.362	0.001541
ORF3a	223	T223S	Act	Tct	1	1	B.1.369	0.000285
ORF3a	223	T223S	Act	Tct	1	1	B.1.375	0.00082
ORF3a	223	T223I	aCt	aTt	1	1	B.1.379	0.017241
ORF3a	223	T223T	acT	acA	1	1	B.1.389	0.001002
ORF3a	223	T223I	aCt	aTt	1	1	B.1.402	0.009804
ORF3a	223	T223T	acT	acA	1	1	B.1.404	0.001302
ORF3a	223	T223A	Act	Gct	1	1	B.1.422	0.000812
ORF3a	223	T223I	aCt	aTt	1	1	B.1.426	0.001009
ORF3a	223	T223I	aCt	aTt	1	1	B.1.433	0.003195
ORF3a	223	T223I	aCt	aTt	1	1	B.1.435	0.011364
ORF3a	223	T223I	aCt	aTt	1	1	B.1.443	0.004673
ORF3a	223	T223T	acT	acA	1	1	B.1.443	0.004673
ORF3a	223	T223I	aCt	aTt	1	1	B.1.466	0.023256
ORF3a	223	T223A	Act	Gct	1	1	B.1.468	0.005714
ORF3a	223	T223I	aCt	aTt	1	1	B.1.470	0.001404
ORF3a	223	T223I	aCt	aTt	1	1	B.1.473	0.019231
ORF3a	223	T223I	aCt	aTt	1	1	B.1.476	0.1
ORF3a	223	T223I	aCt	aTt	1	1	B.1.480	0.002488
ORF3a	223	T223I	aCT	aTA	1	1	B.1.497	0.000315
ORF3a	223	T223I	aCt	aTt	1	1	B.1.505	0.004386
ORF3a	223	T223I	aCt	aTt	1	1	B.1.506	0.02381
ORF3a	223	T223I	aCt	aTt	1	1	B.1.510	0.026316
ORF3a	223	T223I	aCt	aTt	1	1	B.1.517	0.000427
ORF3a	223	T223I	aCt	aTt	1	1	B.1.520	0.021739
ORF3a	223	T223I	aCt	aTt	1	1	B.1.521	0.004975
ORF3a	223	T223I	aCt	aTt	1	1	B.1.541	0.004425
ORF3a	223	T223I	aCt	aTt	1	1	B.1.542	0.03125
ORF3a	223	T223I	aCt	aTt	1	1	B.1.545	0.014493
ORF3a	223	T223I	aCt	aTt	1	1	B.1.554	0.004405
ORF3a	223	T223I	aCt	aTt	1	1	B.1.560	0.00463
ORF3a	223	T223I	aCt	aTt	1	1	B.1.561	0.000397
ORF3a	223	T223S	Act	Tct	1	1	B.1.564	0.000426
ORF3a	223	T223T	acT	acA	1	1	B.1.567	0.003333
ORF3a	223	T223I	aCt	aTt	1	1	B.1.574	0.002151
ORF3a	223	T223I	aCt	aTt	1	1	B.1.575.1	0.002439
ORF3a	223	T223I	aCt	aTt	1	1	B.1.576	0.000907
ORF3a	223	T223del	ACT	---	1	1	B.1.577	0.000687
ORF3a	223	T223S	Act	Tct	1	1	B.1.577	0.000687
ORF3a	223	T223I	aCt	aTt	1	1	B.1.580	0.004065
ORF3a	223	T223T	acT	acA	1	1	B.1.580	0.004065
ORF3a	223	T223T	acT	acA	1	1	B.1.581	0.009434
ORF3a	223	T223I	aCt	aTt	1	1	B.1.589	0.007576
ORF3a	223	T223I	aCt	aTt	1	1	B.1.590	0.004545
ORF3a	223	T223N	aCt	aAt	1	1	B.1.593	0.01087
ORF3a	223	T223S	Act	Tct	1	1	B.1.599	0.00365
ORF3a	223	T223N	aCt	aAt	1	1	B.1.601	0.030303
ORF3a	223	T223I	aCt	aTt	1	1	B.1.606	0.006024
ORF3a	223	T223T	acT	acA	1	1	B.1.609	0.000479
ORF3a	223	T223I	aCt	aTt	1	1	B.1.612	0.002653
ORF3a	223	T223P	Act	Cct	1	1	B.1.617.2	0.000004
ORF3a	223	T223del	ACT	---	1	1	B.1.617.2	0.000004
ORF3a	223	T223I	aCt	aTt	1	1	B.1.619.1	0.000641
ORF3a	223	T223I	aCt	aTt	1	1	B.1.620	0.000946
ORF3a	223	T223L	ACT	CTG	1	1	B.1.621	0.000089
ORF3a	223	T223T	acT	acC	1	1	B.1.637	0.000073
ORF3a	223	T223T	acT	acA	1	1	B.1.9	0.006173
ORF3a	223	T223T	acT	acC	1	1	B.1.94	0.027027
ORF3a	223	T223A	Act	Gct	1	1	B.4	0.002208
ORF3a	223	T223I	aCt	aTt	1	1	B.4	0.002208
ORF3a	223	T223A	Act	Gct	1	1	B.4.1	0.018868
ORF3a	223	T223I	aCt	aTt	1	1	B.40	0.000364
ORF3a	223	T223I	aCt	aTt	1	1	C.11	0.010638
ORF3a	223	T223I	aCt	aTt	1	1	C.3	0.007634
ORF3a	223	T223Y	ACt	TAt	1	1	C.31	0.017857
ORF3a	223	T223S	Act	Tct	1	1	C.31	0.017857
ORF3a	223	T223T	acT	acA	1	1	C.37	0.000116
ORF3a	223	T223I	aCt	aTt	1	1	C.6	0.037037
ORF3a	223	T223T	acT	acC	1	1	D.2	0.000075
ORF3a	223	T223T	acT	acA	1	1	N.1	0.016949
ORF3a	223	T223T	acT	acA	1	1	N.10	0.029412
ORF3a	223	T223I	aCt	aTt	1	1	N.4	0.004255
ORF3a	223	T223I	aCt	aTt	1	1	P.1.1	0.000318
ORF3a	223	T223I	aCt	aTt	1	1	P.1.12	0.000484
ORF3a	223	T223T	acT	acA	1	1	P.2	0.000187
ORF3a	223	T223del	ACT	---	1	1	Q.1	0.000126
ORF3a	223	T223T	acT	acA	1	1	Q.1	0.000126
ORF3a	223	T223del	ACT	---	1	1	Q.2	0.000613
ORF3a	223	T223A	Act	Gct	1	1	Q.8	0.000165
ORF3a	223	T223del	ACT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.