CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 223

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a223T223InonsynaCtaTt35141351370.99988626059-26061
ORF3a223T223InonsynaCTaTA3514140.00011382726059-26061
ORF3a223T223NnonsynaCtaAt28102810126059-26061
ORF3a223T223TsynacTacA11076120.55284626059-26061
ORF3a223T223TsynacTacC11074810.43450826059-26061
ORF3a223T223TsynacTacG1107140.012646826059-26061
ORF3a223T223SnonsynActTct7014980.71041426059-26061
ORF3a223T223SnonsynaCtaGt7012030.28958626059-26061
ORF3a223T223AnonsynActGct5025010.99800826059-26061
ORF3a223T223AnonsynAcTGcA50210.0019920326059-26061
ORF3a223T223deldelACT---3232126059-26061
ORF3a223T223PnonsynActCct3030126059-26061
ORF3a223T223FnonsynACtTTt1212126059-26061
ORF3a223T223VnonsynACtGTt66126059-26061
ORF3a223T223del1delacTac-320.66666726059-26061
ORF3a223T223del1delaCta-t310.33333326059-26061
ORF3a223T223LnonsynACTCTG210.526059-26061
ORF3a223T223LnonsynACTCTC210.526059-26061
ORF3a223T223del2delACT--N11126059-26061
ORF3a223T223YnonsynACtTAt11126059-26061

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a223T223IaCtaTt3513735141All0.00672
ORF3a223T223IaCTaTA435141All0.000001
ORF3a223T223IaCtaTt69006900B.1.20.060757
ORF3a223T223IaCtaTt45364536AD.20.993212
ORF3a223T223IaCtaTt34803480B.1.1.70.003115
ORF3a223T223NaCtaAt28102810All0.000537
ORF3a223T223IaCtaTt24582458AY.360.36431
ORF3a223T223IaCtaTt17991799AY.40.0028
ORF3a223T223IaCtaTt17881791B.10.016377
ORF3a223T223IaCTaTA31791B.10.000027
ORF3a223T223NaCtaAt12531253B.1.177.730.709513
ORF3a223T223IaCtaTt11191119B.1.1.2160.996438
ORF3a223T223TacTacA6121107All0.000117
ORF3a223T223TacTacC4811107All0.000092
ORF3a223T223TacTacG141107All0.000003
ORF3a223T223IaCtaTt10511051B.1.1.4160.951131
ORF3a223T223IaCtaTt784784B.1.36.270.598473
ORF3a223T223NaCtaAt724724B.1.1.70.000648
ORF3a223T223IaCtaTt718718AY.430.003181
ORF3a223T223SActTct498701All0.000095
ORF3a223T223SaCtaGt203701All0.000039
ORF3a223T223IaCtaTt648648B.1.360.094543
ORF3a223T223IaCtaTt634634B.1.1.4330.903134
ORF3a223T223IaCtaTt582582B.1.10.010558
ORF3a223T223AActGct501502All0.000096
ORF3a223T223AAcTGcA1502All0
ORF3a223T223IaCtaTt432432B.1.1110.507638
ORF3a223T223IaCtaTt407407P.1.140.019455
ORF3a223T223NaCtaAt338338B.10.003096
ORF3a223T223TacTacA318318B.1.3960.224418
ORF3a223T223IaCtaTt310310B.1.1770.004082
ORF3a223T223TacTacC245277B.1.617.20.000923
ORF3a223T223TacTacA30277B.1.617.20.000113
ORF3a223T223TacTacG2277B.1.617.20.000008
ORF3a223T223IaCtaTt271271AM.40.967857
ORF3a223T223IaCtaTt269269P.1.160.100636
ORF3a223T223IaCtaTt256256C.160.271474
ORF3a223T223IaCtaTt254254AY.250.001528
ORF3a223T223IaCtaTt243243B.1.617.20.000915
ORF3a223T223IaCtaTt240240AD.10.987654
ORF3a223T223IaCtaTt229229AY.1030.001422
ORF3a223T223IaCtaTt226226AY.30.002248
ORF3a223T223IaCtaTt219219B.1.1600.00683
ORF3a223T223IaCtaTt218218B.1.1.5190.008657
ORF3a223T223AActGct216216B.1.2790.11094
ORF3a223T223IaCtaTt204204P.10.003214
ORF3a223T223IaCtaTt160160B.1.2430.011134
ORF3a223T223IaCtaTt143143B.1.2650.181703
ORF3a223T223IaCtaTt135135AY.1200.005019
ORF3a223T223IaCtaTt131131B.1.3370.731844
ORF3a223T223NaCtaAt130130B.1.4080.479705
ORF3a223T223IaCtaTt127127B.1.1.2940.160759
ORF3a223T223IaCtaTt119119B.1.6090.057047
ORF3a223T223IaCtaTt115115AB.10.942623
ORF3a223T223SaCtaGt113113AY.1030.000702
ORF3a223T223IaCtaTt113113B.1.1.3150.957627
ORF3a223T223SActTct100109B.1.1.70.00009
ORF3a223T223SaCtaGt9109B.1.1.70.000008
ORF3a223T223NaCtaAt109109B.1.1770.001435
ORF3a223T223IaCtaTt108108B.1.4290.002541
ORF3a223T223IaCtaTt107107AY.440.000651
ORF3a223T223TacTacA100106B.10.000916
ORF3a223T223TacTacC6106B.10.000055
ORF3a223T223IaCtaTt106106B.1.1.4281
ORF3a223T223SActTct101103B.1.20.000889
ORF3a223T223SaCtaGt2103B.1.20.000018
ORF3a223T223IaCtaTt103103B.1.5960.008975
ORF3a223T223SActTct9898B.1.4290.002306
ORF3a223T223IaCtaTt9797B.1.1.10.031689
ORF3a223T223IaCtaTt9696B.1.5230.235294
ORF3a223T223TacTacC9293B.1.2210.006535
ORF3a223T223TacTacG193B.1.2210.000071
ORF3a223T223IaCtaTt9393B.1.5770.063918
ORF3a223T223IaCtaTt8383P.1.100.022366
ORF3a223T223AActGct7878B.1.177.720.264407
ORF3a223T223IaCtaTt7878B.1.466.20.030516
ORF3a223T223IaCtaTt7777B.1.3770.351598
ORF3a223T223IaCtaTt7575B.1.3980.223214
ORF3a223T223IaCtaTt7474P.1.70.023627
ORF3a223T223IaCtaTt7171B.1.1.330.029882
ORF3a223T223IaCtaTt6666B.1.36.350.171875
ORF3a223T223IaCtaTt6363AY.1010.030897
ORF3a223T223AActGct6161B.1.258.240.655914
ORF3a223T223IaCtaTt5757B.1.5391
ORF3a223T223IaCtaTt5050AY.1020.001326
ORF3a223T223TacTacC3949B.1.1.70.000035
ORF3a223T223TacTacA949B.1.1.70.000008
ORF3a223T223TacTacG149B.1.1.70.000001
ORF3a223T223IaCtaTt4848AY.200.001866
ORF3a223T223IaCtaTt4747B.1.5950.012265
ORF3a223T223NaCtaAt4646C.310.821429
ORF3a223T223IaCtaTt4545P.1.150.010455
ORF3a223T223SaCtaGt4244AY.470.001306
ORF3a223T223SActTct244AY.470.000062
ORF3a223T223IaCtaTt4444B.1.1.2090.392857
ORF3a223T223IaCtaTt4444B.1.36.220.05314
ORF3a223T223IaCtaTt4444P.1.17.10.038495
ORF3a223T223IaCtaTt4343M.11
ORF3a223T223IaCtaTt4242AY.330.002805
ORF3a223T223IaCtaTt4141B.1.5580.187215
ORF3a223T223NaCtaAt4141Q.10.005179
ORF3a223T223TacTacA4040B.1.1.330.016835
ORF3a223T223IaCtaTt4040B.1.1.4040.634921
ORF3a223T223NaCtaAt3939AY.1190.001377
ORF3a223T223IaCtaTt3939B.1.1.630.015046
ORF3a223T223IaCtaTt3838AY.830.065517
ORF3a223T223IaCtaTt3838B.1.3960.026817
ORF3a223T223SActTct3838B.1.4270.001919
ORF3a223T223IaCtaTt3737B.1.617.10.004772
ORF3a223T223IaCtaTt3636AY.1190.001271
ORF3a223T223IaCtaTt3636B.1.3510.00107
ORF3a223T223IaCtaTt3636B.1.517.10.189474
ORF3a223T223IaCtaTt3434B.1.1.280.010582
ORF3a223T223IaCtaTt3434B.1.4010.278689
ORF3a223T223delACT---3232All0.000006
ORF3a223T223IaCtaTt3131C.10.074163
ORF3a223T223PActCct3030All0.000006
ORF3a223T223IaCtaTt3030AM.31
ORF3a223T223AActGct3030B.1.1.70.000027
ORF3a223T223SActTct2929B.1.258.240.311828
ORF3a223T223IaCtaTt2929B.1.36.290.015003
ORF3a223T223IaCtaTt2929B.1.36.380.047619
ORF3a223T223IaCtaTt2828AY.390.000692
ORF3a223T223IaCtaTt2828C.1.20.119149
ORF3a223T223IaCtaTt2727B.1.1.1530.029573
ORF3a223T223IaCtaTt2525C.360.022769
ORF3a223T223IaCtaTt2424B.1.5260.000564
ORF3a223T223IaCtaTt2323B.1.1.3060.010083
ORF3a223T223IaCtaTt2323C.370.002669
ORF3a223T223IaCtaTt2222AD.2.11
ORF3a223T223IaCtaTt2222AY.730.014637
ORF3a223T223SActTct1921B.10.000174
ORF3a223T223SaCtaGt221B.10.000018
ORF3a223T223IaCtaTt2020B.1.36.80.02
ORF3a223T223TacTacA2020B.1.416.10.03125
ORF3a223T223IaCtaTt1919AY.1000.000874
ORF3a223T223IaCtaTt1919AY.46.60.001372
ORF3a223T223TacTacA1519B.1.20.000132
ORF3a223T223TacTacC219B.1.20.000018
ORF3a223T223TacTacG219B.1.20.000018
ORF3a223T223SActTct1519B.1.2430.001044
ORF3a223T223SaCtaGt419B.1.2430.000278
ORF3a223T223IaCtaTt1919P.20.003546
ORF3a223T223IaCtaTt1818AY.420.000724
ORF3a223T223IaCtaTt1818B.1.177.810.003408
ORF3a223T223IaCtaTt1818B.1.3910.020293
ORF3a223T223NaCtaAt1717AY.40.000026
ORF3a223T223NaCtaAt1717AY.46.60.001228
ORF3a223T223IaCtaTt1717B.1.1.2840.001826
ORF3a223T223AActGct1717B.1.1770.000224
ORF3a223T223SActTct1617B.1.5960.001394
ORF3a223T223SaCtaGt117B.1.5960.000087
ORF3a223T223TacTacC1616AE.80.007824
ORF3a223T223PActCct1616AY.40.000025
ORF3a223T223TacTacC1616AY.840.006999
ORF3a223T223IaCtaTt1616B.1.1.1740.054054
ORF3a223T223IaCtaTt1616B.1.2580.001065
ORF3a223T223IaCtaTt1616B.1.4560.052288
ORF3a223T223IaCtaTt1616P.1.170.002588
ORF3a223T223IaCtaTt1515A.2.50.007485
ORF3a223T223TacTacA1415AY.1190.000494
ORF3a223T223TacTacC115AY.1190.000035
ORF3a223T223IaCtaTt1515AY.290.000237
ORF3a223T223IaCtaTt1515B.1.177.860.002752
ORF3a223T223IaCtaTt1515B.1.5650.012156
ORF3a223T223IaCtaTt1515B.1.5970.069444
ORF3a223T223IaCtaTt1414AY.4.50.001505
ORF3a223T223IaCtaTt1414AY.920.004022
ORF3a223T223IaCtaTt1414B.1.1.2220.002856
ORF3a223T223IaCtaTt1414B.1.1.250.007959
ORF3a223T223IaCtaTt1414B.1.177.150.008833
ORF3a223T223IaCtaTt1414B.1.2290.135922
ORF3a223T223AActGct1414B.4.81
ORF3a223T223NaCtaAt1414Q.30.00203
ORF3a223T223SActTct1313B.1.1.5190.000516
ORF3a223T223IaCtaTt1313B.1.2210.000923
ORF3a223T223IaCtaTt1313B.1.2400.002802
ORF3a223T223NaCtaAt1313B.1.617.20.000049
ORF3a223T223IaCtaTt1212A0.004644
ORF3a223T223FACtTTt1212All0.000002
ORF3a223T223IaCtaTt1212AY.230.000837
ORF3a223T223IaCtaTt1212AY.4.2.10.001788
ORF3a223T223IaCtaTt1212B.1.2600.040134
ORF3a223T223IaCtaTt1212B.1.6210.001062
ORF3a223T223TacTacC1111AY.430.000049
ORF3a223T223IaCtaTt1111B.1.36.360.006623
ORF3a223T223IaCtaTt1010AY.1170.000845
ORF3a223T223IaCtaTt1010AY.1180.000626
ORF3a223T223TacTacC610AY.40.000009
ORF3a223T223TacTacA410AY.40.000006
ORF3a223T223IaCtaTt1010AY.4.20.000217
ORF3a223T223IaCtaTt1010AY.460.001041
ORF3a223T223IaCtaTt1010AY.470.000311
ORF3a223T223IaCtaTt1010AY.50.000206
ORF3a223T223IaCtaTt1010B.1.2340.001319
ORF3a223T223TacTacC1010B.1.4290.000235
ORF3a223T223IaCtaTt1010B.1.4680.057143
ORF3a223T223IaCtaTt99AM.11
ORF3a223T223IaCtaTt99AM.21
ORF3a223T223IaCtaTt99B.1.1.390.004587
ORF3a223T223IaCtaTt99B.1.1.5260.031915
ORF3a223T223IaCtaTt99B.1.177.210.000688
ORF3a223T223IaCtaTt99B.1.2320.004836
ORF3a223T223IaCtaTt99B.1.4270.000454
ORF3a223T223IaCtaTt88AY.1110.001465
ORF3a223T223IaCtaTt88AY.1210.001083
ORF3a223T223NaCtaAt88AY.390.000198
ORF3a223T223SaCtaGt88AY.540.000763
ORF3a223T223NaCtaAt88B.1.10.000145
ORF3a223T223AActGct88B.1.1.10.002614
ORF3a223T223IaCtaTt88B.1.1.2140.000444
ORF3a223T223AActGct88B.1.1.330.003367
ORF3a223T223IaCtaTt88B.1.1.3571
ORF3a223T223IaCtaTt88B.1.1990.033058
ORF3a223T223SActTct88B.1.2340.001056
ORF3a223T223AActGct88B.1.3510.000238
ORF3a223T223IaCtaTt88B.1.4080.02952
ORF3a223T223SActTct88B.1.5610.003176
ORF3a223T223TacTacA88B.1.5960.000697
ORF3a223T223IaCtaTt88Q.80.001319
ORF3a223T223TacTacC47AY.250.000024
ORF3a223T223TacTacG27AY.250.000012
ORF3a223T223TacTacA17AY.250.000006
ORF3a223T223IaCtaTt77AY.260.000198
ORF3a223T223AActGct77AY.40.000011
ORF3a223T223IaCtaTt77AY.540.000667
ORF3a223T223IaCtaTt77B.1.177.440.003633
ORF3a223T223IaCtaTt77B.1.36.170.003458
ORF3a223T223IaCtaTt77B.1.3710.007856
ORF3a223T223IaCtaTt77B.1.5330.067308
ORF3a223T223IaCtaTt77B.1.5820.003435
ORF3a223T223delACT---660.333333
ORF3a223T223VACtGTt66All0.000001
ORF3a223T223IaCtaTt66AY.350.001398
ORF3a223T223PActCct66AY.390.000148
ORF3a223T223IaCtaTt66AY.39.10.000238
ORF3a223T223TacTacA36AY.440.000018
ORF3a223T223TacTacC36AY.440.000018
ORF3a223T223IaCtaTt66AY.450.00073
ORF3a223T223IaCtaTt66AY.710.00285
ORF3a223T223IaCtaTt66AY.840.002625
ORF3a223T223IaCtaTt66AY.98.10.000291
ORF3a223T223IaCtaTt66AY.99.20.000553
ORF3a223T223TacTacA66B.1.10.000109
ORF3a223T223IaCtaTt66B.1.1.2200.011152
ORF3a223T223IaCtaTt66B.1.1.3510.01676
ORF3a223T223IaCtaTt66B.1.1.5250.032787
ORF3a223T223IaCtaTt66B.1.1390.004399
ORF3a223T223IaCtaTt66B.1.36.190.055556
ORF3a223T223FACtTTt66B.1.3770.027397
ORF3a223T223IaCtaTt66B.1.4000.002574
ORF3a223T223SActTct66B.1.4040.007812
ORF3a223T223IaCtaTt66B.1.5620.111111
ORF3a223T223IaCtaTt66B.1.6280.002114
ORF3a223T223IaCtaTt66D.20.00045
ORF3a223T223IaCtaTt55AY.610.000524
ORF3a223T223IaCtaTt55AY.650.002665
ORF3a223T223IaCtaTt55B0.000639
ORF3a223T223IaCtaTt55B.1.1.3170.002058
ORF3a223T223IaCtaTt55B.1.1.3290.019231
ORF3a223T223IaCtaTt55B.1.1.4030.128205
ORF3a223T223IaCtaTt55B.1.1.580.026882
ORF3a223T223IaCtaTt55B.1.1450.263158
ORF3a223T223IaCtaTt55B.1.177.750.005203
ORF3a223T223IaCtaTt55B.1.1920.046296
ORF3a223T223IaCtaTt55B.1.2140.018315
ORF3a223T223IaCtaTt55B.1.3490.003574
ORF3a223T223IaCtaTt55B.1.5250.000566
ORF3a223T223SActTct55B.1.6090.002397
ORF3a223T223SActTct55B.1.6310.016835
ORF3a223T223TacTacA35P.10.000047
ORF3a223T223TacTacC25P.10.000032
ORF3a223T223SaCtaGt45R.10.00036
ORF3a223T223SActTct15R.10.00009
ORF3a223T223VACtGTt44AM.40.014286
ORF3a223T223IaCtaTt44AY.1130.00057
ORF3a223T223IaCtaTt44AY.1140.000924
ORF3a223T223IaCtaTt44AY.140.000352
ORF3a223T223IaCtaTt44AY.16.10.00188
ORF3a223T223NaCtaAt44AY.250.000024
ORF3a223T223TacTacG34AY.30.00003
ORF3a223T223TacTacA14AY.30.00001
ORF3a223T223IaCtaTt44AY.320.00213
ORF3a223T223IaCtaTt44AY.340.000388
ORF3a223T223IaCtaTt44AY.690.000747
ORF3a223T223NaCtaAt44AY.750.000224
ORF3a223T223IaCtaTt44AY.960.008299
ORF3a223T223AActGct44B.10.000037
ORF3a223T223IaCtaTt44B.1.1.100.004459
ORF3a223T223IaCtaTt44B.1.1.1700.004988
ORF3a223T223SaCtaGt44B.1.1.2140.000222
ORF3a223T223IaCtaTt44B.1.1.2680.059701
ORF3a223T223IaCtaTt44B.1.1.3090.023392
ORF3a223T223IaCtaTt44B.1.1.3350.051948
ORF3a223T223IaCtaTt44B.1.1.370.000771
ORF3a223T223IaCtaTt44B.1.1.3720.002755
ORF3a223T223NaCtaAt44B.1.1.3890.024242
ORF3a223T223IaCtaTt44B.1.1.4090.011331
ORF3a223T223PActCct44B.1.1.70.000004
ORF3a223T223IaCtaTt44B.1.177.160.002658
ORF3a223T223FACtTTt44B.1.20.000035
ORF3a223T223IaCtaTt44B.1.2010.022727
ORF3a223T223IaCtaTt44B.1.2100.008529
ORF3a223T223IaCtaTt44B.1.3360.009756
ORF3a223T223IaCtaTt44B.1.36.160.005698
ORF3a223T223NaCtaAt44B.1.36.190.037037
ORF3a223T223IaCtaTt44B.1.36.240.024691
ORF3a223T223IaCtaTt44B.1.4620.028986
ORF3a223T223delACT---44B.1.5250.000453
ORF3a223T223IaCtaTt44B.1.5380.032258
ORF3a223T223SActTct44B.1.5510.005161
ORF3a223T223IaCtaTt44B.1.5640.001704
ORF3a223T223AActGct44B.1.617.20.000015
ORF3a223T223SaCtaGt44B.1.617.20.000015
ORF3a223T223IaCtaTt44N.50.007067
ORF3a223T223IaCtaTt44Q.10.000505
ORF3a223T223del1acTac-23All0
ORF3a223T223del1aCta-t13All0
ORF3a223T223NaCtaAt33AY.1030.000019
ORF3a223T223TacTacC23AY.1030.000012
ORF3a223T223TacTacA13AY.1030.000006
ORF3a223T223IaCtaTt33AY.1090.002219
ORF3a223T223IaCtaTt33AY.160.001139
ORF3a223T223AActGct33AY.290.000047
ORF3a223T223IaCtaTt33AY.3.10.000256
ORF3a223T223delACT---33AY.430.000013
ORF3a223T223NaCtaAt33AY.440.000018
ORF3a223T223AActGct33AY.440.000018
ORF3a223T223IaCtaTt33AY.620.001307
ORF3a223T223IaCtaTt33B.1.1.2610.025862
ORF3a223T223IaCtaTt33B.1.1.3050.011583
ORF3a223T223IaCtaTt33B.1.1.3180.000905
ORF3a223T223IaCtaTt33B.1.1.3680.009259
ORF3a223T223IaCtaTt33B.1.1.4320.003797
ORF3a223T223IaCtaTt33B.1.1.4590.046154
ORF3a223T223IaCtaTt33B.1.1.460.0131
ORF3a223T223delACT---33B.1.1.70.000003
ORF3a223T223IaCtaTt33B.1.177.100.002634
ORF3a223T223IaCtaTt33B.1.177.120.000455
ORF3a223T223IaCtaTt33B.1.177.40.000633
ORF3a223T223IaCtaTt33B.1.177.70.000495
ORF3a223T223IaCtaTt33B.1.177.730.001699
ORF3a223T223IaCtaTt33B.1.214.20.001799
ORF3a223T223IaCtaTt33B.1.2370.014925
ORF3a223T223SActTct33B.1.3110.000824
ORF3a223T223IaCtaTt33B.1.3110.000824
ORF3a223T223AActGct33B.1.36.80.003
ORF3a223T223IaCtaTt33B.1.3690.000856
ORF3a223T223IaCtaTt33B.1.3890.003006
ORF3a223T223IaCtaTt33B.1.4590.012245
ORF3a223T223SActTct33B.1.5260.000071
ORF3a223T223SActTct33B.1.5950.000783
ORF3a223T223IaCtaTt33B.1.9.50.017045
ORF3a223T223AActGct33C.130.076923
ORF3a223T223IaCtaTt33C.140.012987
ORF3a223T223AActGct33C.60.111111
ORF3a223T223NaCtaAt33P.10.000047
ORF3a223T223IaCtaTt33Q.30.000435
ORF3a223T223IaCtaTt33Q.60.019868
ORF3a223T223IaCtaTt22A.23.10.001408
ORF3a223T223IaCtaTt22A.270.003311
ORF3a223T223LACTCTC12All0
ORF3a223T223LACTCTG12All0
ORF3a223T223TacTacC22AY.1110.000366
ORF3a223T223IaCtaTt22AY.1160.000574
ORF3a223T223TacTacG22AY.1200.000074
ORF3a223T223IaCtaTt22AY.120.20.002571
ORF3a223T223IaCtaTt22AY.270.000129
ORF3a223T223IaCtaTt22AY.29.10.000441
ORF3a223T223TacTacA22AY.300.000791
ORF3a223T223TacTacA22AY.4.20.000043
ORF3a223T223SaCtaGt22AY.440.000012
ORF3a223T223TacTacC22AY.50.000041
ORF3a223T223IaCtaTt22AY.500.001599
ORF3a223T223TacTacA22AY.540.000191
ORF3a223T223TacTacC22AY.670.000929
ORF3a223T223IaCtaTt22AY.70.000392
ORF3a223T223IaCtaTt22AY.750.000112
ORF3a223T223IaCtaTt22AY.820.002714
ORF3a223T223IaCtaTt22AY.850.000854
ORF3a223T223IaCtaTt22AY.950.001522
ORF3a223T223IaCtaTt22AY.980.000158
ORF3a223T223TacTacG12AY.980.000079
ORF3a223T223TacTacA12AY.980.000079
ORF3a223T223AActGct22B0.000256
ORF3a223T223FACtTTt22B.1.10.000036
ORF3a223T223NaCtaAt22B.1.1.10.000653
ORF3a223T223IaCtaTt22B.1.1.1690.036364
ORF3a223T223IaCtaTt22B.1.1.1890.003026
ORF3a223T223IaCtaTt22B.1.1.1960.011429
ORF3a223T223IaCtaTt22B.1.1.2190.01
ORF3a223T223IaCtaTt22B.1.1.2250.014388
ORF3a223T223IaCtaTt22B.1.1.270.011299
ORF3a223T223IaCtaTt22B.1.1.2790.002242
ORF3a223T223AActGct22B.1.1.280.000622
ORF3a223T223IaCtaTt22B.1.1.2910.001485
ORF3a223T223IaCtaTt22B.1.1.3110.000716
ORF3a223T223SActTct22B.1.1.3160.00185
ORF3a223T223IaCtaTt22B.1.1.3260.003521
ORF3a223T223SActTct22B.1.1.4320.002532
ORF3a223T223IaCtaTt22B.1.1160.023256
ORF3a223T223IaCtaTt22B.1.1420.005797
ORF3a223T223IaCtaTt22B.1.1570.00597
ORF3a223T223NaCtaAt22B.1.160.200.017857
ORF3a223T223SaCtaGt22B.1.1770.000026
ORF3a223T223TacTacA22B.1.177.230.006472
ORF3a223T223IaCtaTt22B.1.177.30.015267
ORF3a223T223IaCtaTt22B.1.177.760.004988
ORF3a223T223IaCtaTt22B.1.1950.01005
ORF3a223T223AActGct22B.1.20.000018
ORF3a223T223del1aCta-t12B.1.20.000009
ORF3a223T223del1acTac-12B.1.20.000009
ORF3a223T223NaCtaAt22B.1.2100.004264
ORF3a223T223TacTacA22B.1.2430.000139
ORF3a223T223AActGct22B.1.2580.000133
ORF3a223T223IaCtaTt22B.1.3150.012121
ORF3a223T223IaCtaTt22B.1.351.50.001199
ORF3a223T223AActGct22B.1.360.000292
ORF3a223T223IaCtaTt22B.1.36.100.009569
ORF3a223T223IaCtaTt22B.1.36.310.003503
ORF3a223T223IaCtaTt22B.1.3670.001585
ORF3a223T223IaCtaTt22B.1.3750.001639
ORF3a223T223IaCtaTt22B.1.3950.014085
ORF3a223T223IaCtaTt22B.1.3990.003868
ORF3a223T223IaCtaTt22B.1.4280.002041
ORF3a223T223IaCtaTt22B.1.4360.002058
ORF3a223T223IaCtaTt22B.1.4710.005464
ORF3a223T223AActGct22B.1.5260.000047
ORF3a223T223IaCtaTt22B.1.5270.007407
ORF3a223T223IaCtaTt22B.1.5300.014286
ORF3a223T223SActTct22B.1.5820.000981
ORF3a223T223TacTacA22B.1.5950.000522
ORF3a223T223IaCtaTt22B.1.6230.001073
ORF3a223T223IaCtaTt22B.1.6370.000146
ORF3a223T223IaCtaTt22B.1.780.017094
ORF3a223T223NaCtaAt22B.1.9.50.011364
ORF3a223T223IaCtaTt22B.1.930.001867
ORF3a223T223IaCtaTt22B.550.0059
ORF3a223T223IaCtaTt22C.230.011628
ORF3a223T223IaCtaTt22C.36.3.10.005435
ORF3a223T223IaCtaTt22L.30.007092
ORF3a223T223IaCtaTt22N.30.011628
ORF3a223T223IaCtaTt22N.90.011905
ORF3a223T223AActGct22P.10.000032
ORF3a223T223IaCtaTt22P.1.20.002312
ORF3a223T223SActTct22P.20.000373
ORF3a223T223IaCtaTt22P.30.00319
ORF3a223T223AAcTGcA12Q.10.000126
ORF3a223T223AActGct12Q.10.000126
ORF3a223T223IaCtaTt22Q.40.00091
ORF3a223T223IaCtaTt22R.10.00018
ORF3a223T223NaCtaAt11A0.000387
ORF3a223T223IaCtaTt11A.190.009434
ORF3a223T223IaCtaTt11A.250.018182
ORF3a223T223YACtTAt11All0
ORF3a223T223del2ACT--N11All0
ORF3a223T223IaCtaTt11AT.10.005128
ORF3a223T223IaCtaTt11AU.10.001266
ORF3a223T223SaCtaGt11AY.1000.000046
ORF3a223T223NaCtaAt11AY.1020.000027
ORF3a223T223TacTacC11AY.1020.000027
ORF3a223T223IaCtaTt11AY.1040.001984
ORF3a223T223IaCtaTt11AY.1100.000113
ORF3a223T223VACtGTt11AY.1190.000035
ORF3a223T223IaCtaTt11AY.120.000316
ORF3a223T223SaCtaGt11AY.1200.000037
ORF3a223T223delACT---11AY.1200.000037
ORF3a223T223PActCct11AY.1210.000135
ORF3a223T223NaCtaAt11AY.160.00038
ORF3a223T223TacTacC11AY.16.10.00047
ORF3a223T223TacTacA11AY.20.000356
ORF3a223T223AActGct11AY.200.000039
ORF3a223T223NaCtaAt11AY.200.000039
ORF3a223T223NaCtaAt11AY.230.00007
ORF3a223T223IaCtaTt11AY.23.10.000417
ORF3a223T223AActGct11AY.250.000006
ORF3a223T223del1acTac-11AY.250.000006
ORF3a223T223LACTCTC11AY.30.00001
ORF3a223T223NaCtaAt11AY.3.10.000085
ORF3a223T223IaCtaTt11AY.300.000396
ORF3a223T223IaCtaTt11AY.310.018519
ORF3a223T223TacTacA11AY.320.000532
ORF3a223T223IaCtaTt11AY.34.10.00051
ORF3a223T223SaCtaGt11AY.380.000499
ORF3a223T223AActGct11AY.390.000025
ORF3a223T223TacTacC11AY.390.000025
ORF3a223T223TacTacA11AY.39.10.00004
ORF3a223T223NaCtaAt11AY.39.20.001541
ORF3a223T223IaCtaTt11AY.400.000964
ORF3a223T223SaCtaGt11AY.430.000004
ORF3a223T223TacTacC11AY.450.000122
ORF3a223T223AActGct11AY.450.000122
ORF3a223T223AActGct11AY.460.000104
ORF3a223T223SaCtaGt11AY.460.000104
ORF3a223T223TacTacA11AY.460.000104
ORF3a223T223IaCtaTt11AY.46.10.001027
ORF3a223T223IaCtaTt11AY.46.20.000635
ORF3a223T223IaCtaTt11AY.46.40.000165
ORF3a223T223PActCct11AY.46.60.000072
ORF3a223T223delACT---11AY.46.60.000072
ORF3a223T223TacTacA11AY.490.003195
ORF3a223T223IaCtaTt11AY.5.30.000337
ORF3a223T223TacTacC11AY.5.30.000337
ORF3a223T223IaCtaTt11AY.530.000288
ORF3a223T223IaCtaTt11AY.550.000917
ORF3a223T223NaCtaAt11AY.570.000656
ORF3a223T223IaCtaTt11AY.590.00053
ORF3a223T223TacTacC11AY.60.000041
ORF3a223T223IaCtaTt11AY.600.000938
ORF3a223T223IaCtaTt11AY.630.000387
ORF3a223T223IaCtaTt11AY.640.000595
ORF3a223T223delACT---11AY.670.000464
ORF3a223T223delACT---11AY.680.000274
ORF3a223T223TacTacC11AY.700.000209
ORF3a223T223TacTacC11AY.740.000116
ORF3a223T223TacTacC11AY.75.10.00018
ORF3a223T223IaCtaTt11AY.75.10.00018
ORF3a223T223IaCtaTt11AY.770.001127
ORF3a223T223del2ACT--N11AY.850.000427
ORF3a223T223IaCtaTt11AY.860.00083
ORF3a223T223IaCtaTt11AY.870.000833
ORF3a223T223IaCtaTt11AY.90.000068
ORF3a223T223IaCtaTt11AY.9.10.000084
ORF3a223T223NaCtaAt11AY.9.20.000037
ORF3a223T223IaCtaTt11AY.9.20.000037
ORF3a223T223IaCtaTt11AY.900.000684
ORF3a223T223TacTacC11AY.920.000287
ORF3a223T223PActCct11AY.980.000079
ORF3a223T223TacTacC11AY.990.001049
ORF3a223T223SActTct11AZ.30.00152
ORF3a223T223VACtGTt11B.10.000009
ORF3a223T223delACT---11B.10.000009
ORF3a223T223AActGct11B.1.10.000018
ORF3a223T223IaCtaTt11B.1.1.1210.002427
ORF3a223T223IaCtaTt11B.1.1.1350.004695
ORF3a223T223IaCtaTt11B.1.1.1370.0125
ORF3a223T223delACT---11B.1.1.1390.022727
ORF3a223T223IaCtaTt11B.1.1.1590.004673
ORF3a223T223IaCtaTt11B.1.1.1600.02381
ORF3a223T223IaCtaTt11B.1.1.1760.000439
ORF3a223T223NaCtaAt11B.1.1.1940.00495
ORF3a223T223TacTacA11B.1.1.2010.02439
ORF3a223T223IaCtaTt11B.1.1.2170.003636
ORF3a223T223IaCtaTt11B.1.1.2260.005814
ORF3a223T223SActTct11B.1.1.2310.003096
ORF3a223T223NaCtaAt11B.1.1.250.000569
ORF3a223T223IaCtaTt11B.1.1.2530.002506
ORF3a223T223IaCtaTt11B.1.1.2620.015152
ORF3a223T223IaCtaTt11B.1.1.2770.000759
ORF3a223T223IaCtaTt11B.1.1.3010.001179
ORF3a223T223IaCtaTt11B.1.1.3040.002809
ORF3a223T223NaCtaAt11B.1.1.3060.000438
ORF3a223T223delACT---11B.1.1.3110.000358
ORF3a223T223IaCtaTt11B.1.1.3120.001912
ORF3a223T223IaCtaTt11B.1.1.3160.000925
ORF3a223T223IaCtaTt11B.1.1.3190.017544
ORF3a223T223IaCtaTt11B.1.1.3250.025641
ORF3a223T223IaCtaTt11B.1.1.3340.016393
ORF3a223T223TacTacA11B.1.1.3350.012987
ORF3a223T223IaCtaTt11B.1.1.3360.016667
ORF3a223T223IaCtaTt11B.1.1.3560.008547
ORF3a223T223IaCtaTt11B.1.1.3700.012658
ORF3a223T223IaCtaTt11B.1.1.3710.010417
ORF3a223T223AActGct11B.1.1.3720.000689
ORF3a223T223TacTacA11B.1.1.3880.045455
ORF3a223T223IaCtaTt11B.1.1.3930.111111
ORF3a223T223IaCtaTt11B.1.1.3970.002252
ORF3a223T223IaCtaTt11B.1.1.4110.014706
ORF3a223T223SActTct11B.1.1.4340.000349
ORF3a223T223IaCtaTt11B.1.1.4480.002033
ORF3a223T223IaCtaTt11B.1.1.4840.1
ORF3a223T223TacTacC11B.1.1.50.008333
ORF3a223T223IaCtaTt11B.1.1.5070.008696
ORF3a223T223IaCtaTt11B.1.1.5180.006329
ORF3a223T223TacTacA11B.1.1.5190.00004
ORF3a223T223IaCtaTt11B.1.1.5230.001563
ORF3a223T223IaCtaTt11B.1.1.950.019608
ORF3a223T223NaCtaAt11B.1.1270.002198
ORF3a223T223IaCtaTt11B.1.1280.000635
ORF3a223T223IaCtaTt11B.1.1400.018868
ORF3a223T223IaCtaTt11B.1.1470.000756
ORF3a223T223AActGct11B.1.1570.002985
ORF3a223T223IaCtaTt11B.1.1580.02381
ORF3a223T223IaCtaTt11B.1.160.220.006757
ORF3a223T223AActGct11B.1.160.290.004219
ORF3a223T223IaCtaTt11B.1.160.310.008065
ORF3a223T223IaCtaTt11B.1.1640.014925
ORF3a223T223delACT---11B.1.1770.000013
ORF3a223T223TacTacC11B.1.1770.000013
ORF3a223T223IaCtaTt11B.1.177.170.000821
ORF3a223T223IaCtaTt11B.1.177.350.000691
ORF3a223T223NaCtaAt11B.1.177.420.000894
ORF3a223T223IaCtaTt11B.1.177.570.000281
ORF3a223T223IaCtaTt11B.1.177.600.000218
ORF3a223T223NaCtaAt11B.1.177.630.002703
ORF3a223T223IaCtaTt11B.1.177.650.000665
ORF3a223T223delACT---11B.1.177.730.000566
ORF3a223T223TacTacC11B.1.177.830.001481
ORF3a223T223IaCtaTt11B.1.177.830.001481
ORF3a223T223IaCtaTt11B.1.177.870.000728
ORF3a223T223IaCtaTt11B.1.1890.004292
ORF3a223T223delACT---11B.1.20.000009
ORF3a223T223SActTct11B.1.2030.0625
ORF3a223T223IaCtaTt11B.1.2030.0625
ORF3a223T223IaCtaTt11B.1.2060.000816
ORF3a223T223TacTacA11B.1.2060.000816
ORF3a223T223IaCtaTt11B.1.214.30.007143
ORF3a223T223NaCtaAt11B.1.2210.000071
ORF3a223T223IaCtaTt11B.1.221.30.000833
ORF3a223T223TacTacA11B.1.2340.000132
ORF3a223T223SActTct11B.1.2400.000216
ORF3a223T223TacTacC11B.1.240.10.025
ORF3a223T223SActTct11B.1.2410.000812
ORF3a223T223IaCtaTt11B.1.2420.018868
ORF3a223T223SActTct11B.1.243.10.022222
ORF3a223T223delACT---11B.1.2580.000067
ORF3a223T223TacTacC11B.1.2580.000067
ORF3a223T223IaCtaTt11B.1.258.120.007874
ORF3a223T223IaCtaTt11B.1.258.170.000104
ORF3a223T223IaCtaTt11B.1.2630.047619
ORF3a223T223IaCtaTt11B.1.3190.003049
ORF3a223T223TacTacC11B.1.3190.003049
ORF3a223T223NaCtaAt11B.1.3230.020833
ORF3a223T223IaCtaTt11B.1.3240.001605
ORF3a223T223IaCtaTt11B.1.3400.004292
ORF3a223T223TacTacA11B.1.3490.000715
ORF3a223T223IaCtaTt11B.1.3500.002933
ORF3a223T223NaCtaAt11B.1.3510.00003
ORF3a223T223AActGct11B.1.36.10.00114
ORF3a223T223AActGct11B.1.36.100.004785
ORF3a223T223IaCtaTt11B.1.36.180.00042
ORF3a223T223IaCtaTt11B.1.36.330.007576
ORF3a223T223TacTacA11B.1.36.360.000602
ORF3a223T223SaCtaGt11B.1.36.360.000602
ORF3a223T223IaCtaTt11B.1.36.70.004
ORF3a223T223IaCtaTt11B.1.3620.001541
ORF3a223T223SActTct11B.1.3690.000285
ORF3a223T223SActTct11B.1.3750.00082
ORF3a223T223IaCtaTt11B.1.3790.017241
ORF3a223T223TacTacA11B.1.3890.001002
ORF3a223T223IaCtaTt11B.1.4020.009804
ORF3a223T223TacTacA11B.1.4040.001302
ORF3a223T223AActGct11B.1.4220.000812
ORF3a223T223IaCtaTt11B.1.4260.001009
ORF3a223T223IaCtaTt11B.1.4330.003195
ORF3a223T223IaCtaTt11B.1.4350.011364
ORF3a223T223IaCtaTt11B.1.4430.004673
ORF3a223T223TacTacA11B.1.4430.004673
ORF3a223T223IaCtaTt11B.1.4660.023256
ORF3a223T223AActGct11B.1.4680.005714
ORF3a223T223IaCtaTt11B.1.4700.001404
ORF3a223T223IaCtaTt11B.1.4730.019231
ORF3a223T223IaCtaTt11B.1.4760.1
ORF3a223T223IaCtaTt11B.1.4800.002488
ORF3a223T223IaCTaTA11B.1.4970.000315
ORF3a223T223IaCtaTt11B.1.5050.004386
ORF3a223T223IaCtaTt11B.1.5060.02381
ORF3a223T223IaCtaTt11B.1.5100.026316
ORF3a223T223IaCtaTt11B.1.5170.000427
ORF3a223T223IaCtaTt11B.1.5200.021739
ORF3a223T223IaCtaTt11B.1.5210.004975
ORF3a223T223IaCtaTt11B.1.5410.004425
ORF3a223T223IaCtaTt11B.1.5420.03125
ORF3a223T223IaCtaTt11B.1.5450.014493
ORF3a223T223IaCtaTt11B.1.5540.004405
ORF3a223T223IaCtaTt11B.1.5600.00463
ORF3a223T223IaCtaTt11B.1.5610.000397
ORF3a223T223SActTct11B.1.5640.000426
ORF3a223T223TacTacA11B.1.5670.003333
ORF3a223T223IaCtaTt11B.1.5740.002151
ORF3a223T223IaCtaTt11B.1.575.10.002439
ORF3a223T223IaCtaTt11B.1.5760.000907
ORF3a223T223delACT---11B.1.5770.000687
ORF3a223T223SActTct11B.1.5770.000687
ORF3a223T223IaCtaTt11B.1.5800.004065
ORF3a223T223TacTacA11B.1.5800.004065
ORF3a223T223TacTacA11B.1.5810.009434
ORF3a223T223IaCtaTt11B.1.5890.007576
ORF3a223T223IaCtaTt11B.1.5900.004545
ORF3a223T223NaCtaAt11B.1.5930.01087
ORF3a223T223SActTct11B.1.5990.00365
ORF3a223T223NaCtaAt11B.1.6010.030303
ORF3a223T223IaCtaTt11B.1.6060.006024
ORF3a223T223TacTacA11B.1.6090.000479
ORF3a223T223IaCtaTt11B.1.6120.002653
ORF3a223T223PActCct11B.1.617.20.000004
ORF3a223T223delACT---11B.1.617.20.000004
ORF3a223T223IaCtaTt11B.1.619.10.000641
ORF3a223T223IaCtaTt11B.1.6200.000946
ORF3a223T223LACTCTG11B.1.6210.000089
ORF3a223T223TacTacC11B.1.6370.000073
ORF3a223T223TacTacA11B.1.90.006173
ORF3a223T223TacTacC11B.1.940.027027
ORF3a223T223AActGct11B.40.002208
ORF3a223T223IaCtaTt11B.40.002208
ORF3a223T223AActGct11B.4.10.018868
ORF3a223T223IaCtaTt11B.400.000364
ORF3a223T223IaCtaTt11C.110.010638
ORF3a223T223IaCtaTt11C.30.007634
ORF3a223T223YACtTAt11C.310.017857
ORF3a223T223SActTct11C.310.017857
ORF3a223T223TacTacA11C.370.000116
ORF3a223T223IaCtaTt11C.60.037037
ORF3a223T223TacTacC11D.20.000075
ORF3a223T223TacTacA11N.10.016949
ORF3a223T223TacTacA11N.100.029412
ORF3a223T223IaCtaTt11N.40.004255
ORF3a223T223IaCtaTt11P.1.10.000318
ORF3a223T223IaCtaTt11P.1.120.000484
ORF3a223T223TacTacA11P.20.000187
ORF3a223T223delACT---11Q.10.000126
ORF3a223T223TacTacA11Q.10.000126
ORF3a223T223delACT---11Q.20.000613
ORF3a223T223AActGct11Q.80.000165
ORF3a223T223delACT---11R.10.00009