CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 22 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a22D22AnonsyngAtgCt3434125456-25458

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a22D22AgAtgCt3434All0.000007
ORF3a22D22AgAtgCt66B.1.1.4580.25
ORF3a22D22AgAtgCt55B.1.10.000091
ORF3a22D22AgAtgCt44AY.1180.000251
ORF3a22D22AgAtgCt44AY.40.000006
ORF3a22D22AgAtgCt33C.370.000348
ORF3a22D22AgAtgCt22B.1.1.2190.01
ORF3a22D22AgAtgCt11AY.1020.000027
ORF3a22D22AgAtgCt11AY.250.000006
ORF3a22D22AgAtgCt11AY.330.000067
ORF3a22D22AgAtgCt11AY.4.50.000107
ORF3a22D22AgAtgCt11AY.450.000122
ORF3a22D22AgAtgCt11B.1.1.3630.005988
ORF3a22D22AgAtgCt11B.1.1.70.000001
ORF3a22D22AgAtgCt11B.1.2580.000067
ORF3a22D22AgAtgCt11B.1.4160.001269
ORF3a22D22AgAtgCt11C.350.000774

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.