CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 219 | L219F | nonsyn | ttG | ttT | 2637 | 2633 | 0.998483 | 26047-26049 | |
ORF3a | 219 | L219F | nonsyn | ttG | ttC | 2637 | 4 | 0.00151688 | 26047-26049 | |
ORF3a | 219 | L219L | syn | ttG | ttA | 974 | 613 | 0.629363 | 26047-26049 | |
ORF3a | 219 | L219L | syn | Ttg | Ctg | 974 | 361 | 0.370637 | 26047-26049 | |
ORF3a | 219 | L219V | nonsyn | Ttg | Gtg | 506 | 481 | 0.950593 | 26047-26049 | |
ORF3a | 219 | L219V | nonsyn | TtG | GtT | 506 | 25 | 0.0494071 | 26047-26049 | |
ORF3a | 219 | L219S | nonsyn | tTg | tCg | 116 | 112 | 0.965517 | 26047-26049 | |
ORF3a | 219 | L219S | nonsyn | tTG | tCT | 116 | 4 | 0.0344828 | 26047-26049 | |
ORF3a | 219 | L219del | del | TTG | --- | 24 | 24 | 1 | 26047-26049 | |
ORF3a | 219 | L219W | nonsyn | tTg | tGg | 9 | 9 | 1 | 26047-26049 | |
ORF3a | 219 | L219K | nonsyn | TTg | AAg | 5 | 3 | 0.6 | 26047-26049 | |
ORF3a | 219 | L219K | nonsyn | TTG | AAA | 5 | 2 | 0.4 | 26047-26049 | |
ORF3a | 219 | L219R | nonsyn | TTG | CGA | 3 | 3 | 1 | 26047-26049 | |
ORF3a | 219 | L219P | nonsyn | TTG | CCA | 2 | 2 | 1 | 26047-26049 | |
ORF3a | 219 | L219Q | nonsyn | TTG | CAA | 2 | 2 | 1 | 26047-26049 | |
ORF3a | 219 | L219T | nonsyn | TTG | ACA | 2 | 2 | 1 | 26047-26049 | |
ORF3a | 219 | L219M | nonsyn | Ttg | Atg | 1 | 1 | 1 | 26047-26049 | |
ORF3a | 219 | L219I | nonsyn | TtG | AtA | 1 | 1 | 1 | 26047-26049 | |
ORF3a | 219 | L219X | nonsyn | tTg | tAg | 1 | 1 | 1 | 26047-26049 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 219 | L219F | ttG | ttT | 2633 | 2637 | All | 0.000504 |
ORF3a | 219 | L219F | ttG | ttC | 4 | 2637 | All | 0.000001 |
ORF3a | 219 | L219F | ttG | ttT | 1580 | 1580 | AY.26 | 0.04473 |
ORF3a | 219 | L219L | ttG | ttA | 613 | 974 | All | 0.000117 |
ORF3a | 219 | L219L | Ttg | Ctg | 361 | 974 | All | 0.000069 |
ORF3a | 219 | L219L | ttG | ttA | 533 | 543 | B.1.1.7 | 0.000477 |
ORF3a | 219 | L219L | Ttg | Ctg | 10 | 543 | B.1.1.7 | 0.000009 |
ORF3a | 219 | L219V | Ttg | Gtg | 481 | 506 | All | 0.000092 |
ORF3a | 219 | L219V | TtG | GtT | 25 | 506 | All | 0.000005 |
ORF3a | 219 | L219V | Ttg | Gtg | 379 | 404 | B.1.1.374 | 0.900238 |
ORF3a | 219 | L219V | TtG | GtT | 25 | 404 | B.1.1.374 | 0.059382 |
ORF3a | 219 | L219F | ttG | ttT | 217 | 217 | B.1.617.2 | 0.000817 |
ORF3a | 219 | L219F | ttG | ttT | 185 | 185 | B.1.1.7 | 0.000166 |
ORF3a | 219 | L219F | ttG | ttT | 144 | 144 | B.1.1.37 | 0.027772 |
ORF3a | 219 | L219L | Ttg | Ctg | 132 | 132 | AY.24 | 0.056897 |
ORF3a | 219 | L219S | tTg | tCg | 112 | 116 | All | 0.000021 |
ORF3a | 219 | L219S | tTG | tCT | 4 | 116 | All | 0.000001 |
ORF3a | 219 | L219F | ttG | ttT | 68 | 68 | B.1.1 | 0.001234 |
ORF3a | 219 | L219L | Ttg | Ctg | 64 | 67 | AY.4 | 0.0001 |
ORF3a | 219 | L219L | ttG | ttA | 3 | 67 | AY.4 | 0.000005 |
ORF3a | 219 | L219F | ttG | ttT | 58 | 58 | B.1.2 | 0.000511 |
ORF3a | 219 | L219L | Ttg | Ctg | 35 | 35 | AY.42 | 0.001408 |
ORF3a | 219 | L219F | ttG | ttT | 30 | 30 | P.1.4 | 0.029297 |
ORF3a | 219 | L219S | tTg | tCg | 29 | 29 | AY.4 | 0.000045 |
ORF3a | 219 | L219F | ttG | ttT | 28 | 28 | AY.43 | 0.000124 |
ORF3a | 219 | L219F | ttG | ttT | 26 | 26 | B.1.177 | 0.000342 |
ORF3a | 219 | L219F | ttG | ttT | 26 | 26 | B.1.526 | 0.000611 |
ORF3a | 219 | L219del | TTG | --- | 24 | 24 | All | 0.000005 |
ORF3a | 219 | L219F | ttG | ttT | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 219 | L219F | ttG | ttT | 18 | 19 | AY.103 | 0.000112 |
ORF3a | 219 | L219F | ttG | ttC | 1 | 19 | AY.103 | 0.000006 |
ORF3a | 219 | L219L | Ttg | Ctg | 18 | 19 | AY.25 | 0.000108 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 19 | AY.25 | 0.000006 |
ORF3a | 219 | L219F | ttG | ttT | 19 | 19 | AY.4 | 0.00003 |
ORF3a | 219 | L219S | tTg | tCg | 19 | 19 | B.1.637 | 0.001388 |
ORF3a | 219 | L219F | ttG | ttT | 15 | 15 | B.1.160 | 0.000468 |
ORF3a | 219 | L219L | ttG | ttA | 15 | 15 | P.1.17 | 0.002426 |
ORF3a | 219 | L219F | ttG | ttT | 14 | 14 | AY.113 | 0.001993 |
ORF3a | 219 | L219F | ttG | ttT | 12 | 12 | AY.25 | 0.000072 |
ORF3a | 219 | L219F | ttG | ttT | 12 | 12 | B.1 | 0.00011 |
ORF3a | 219 | L219F | ttG | ttT | 11 | 11 | AY.4.2 | 0.000239 |
ORF3a | 219 | L219F | ttG | ttT | 11 | 11 | AY.44 | 0.000067 |
ORF3a | 219 | L219L | Ttg | Ctg | 11 | 11 | AY.69 | 0.002053 |
ORF3a | 219 | L219V | Ttg | Gtg | 11 | 11 | B.1 | 0.000101 |
ORF3a | 219 | L219S | tTg | tCg | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 219 | L219L | ttG | ttA | 10 | 10 | B.1.637 | 0.000731 |
ORF3a | 219 | L219V | Ttg | Gtg | 10 | 10 | B.1.8 | 0.019724 |
ORF3a | 219 | L219W | tTg | tGg | 9 | 9 | All | 0.000002 |
ORF3a | 219 | L219F | ttG | ttT | 9 | 9 | AY.9.2 | 0.000331 |
ORF3a | 219 | L219V | Ttg | Gtg | 9 | 9 | B.1.1 | 0.000163 |
ORF3a | 219 | L219V | Ttg | Gtg | 9 | 9 | B.1.1.12 | 0.067164 |
ORF3a | 219 | L219F | ttG | ttT | 8 | 8 | AY.114 | 0.001849 |
ORF3a | 219 | L219L | Ttg | Ctg | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 219 | L219L | ttG | ttA | 8 | 8 | B.1 | 0.000073 |
ORF3a | 219 | L219L | Ttg | Ctg | 6 | 8 | P.1 | 0.000095 |
ORF3a | 219 | L219L | ttG | ttA | 2 | 8 | P.1 | 0.000032 |
ORF3a | 219 | L219L | Ttg | Ctg | 6 | 7 | AY.29 | 0.000095 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 7 | AY.29 | 0.000016 |
ORF3a | 219 | L219V | Ttg | Gtg | 7 | 7 | B.1.22 | 0.009223 |
ORF3a | 219 | L219L | Ttg | Ctg | 5 | 7 | B.1.617.2 | 0.000019 |
ORF3a | 219 | L219L | ttG | ttA | 2 | 7 | B.1.617.2 | 0.000008 |
ORF3a | 219 | L219L | Ttg | Ctg | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 219 | L219L | ttG | ttA | 6 | 6 | AY.114 | 0.001387 |
ORF3a | 219 | L219L | ttG | ttA | 5 | 6 | AY.3 | 0.00005 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 6 | AY.3 | 0.00001 |
ORF3a | 219 | L219S | tTg | tCg | 4 | 6 | AY.43 | 0.000018 |
ORF3a | 219 | L219S | tTG | tCT | 2 | 6 | AY.43 | 0.000009 |
ORF3a | 219 | L219L | ttG | ttA | 5 | 6 | B.1.1 | 0.000091 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 6 | B.1.1 | 0.000018 |
ORF3a | 219 | L219V | Ttg | Gtg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF3a | 219 | L219L | ttG | ttA | 3 | 6 | B.1.2 | 0.000026 |
ORF3a | 219 | L219L | Ttg | Ctg | 3 | 6 | B.1.2 | 0.000026 |
ORF3a | 219 | L219F | ttG | ttT | 6 | 6 | B.1.429 | 0.000141 |
ORF3a | 219 | L219F | ttG | ttT | 6 | 6 | P.1 | 0.000095 |
ORF3a | 219 | L219K | TTg | AAg | 3 | 5 | All | 0.000001 |
ORF3a | 219 | L219K | TTG | AAA | 2 | 5 | All | 0 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.14 | 0.00044 |
ORF3a | 219 | L219S | tTg | tCg | 5 | 5 | AY.2 | 0.001781 |
ORF3a | 219 | L219L | Ttg | Ctg | 5 | 5 | AY.26 | 0.000142 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 219 | L219V | Ttg | Gtg | 5 | 5 | B.1.1.192 | 0.011547 |
ORF3a | 219 | L219del | TTG | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 219 | L219L | ttG | ttA | 5 | 5 | B.1.495 | 0.045455 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | AY.100 | 0.000184 |
ORF3a | 219 | L219V | Ttg | Gtg | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 219 | L219W | tTg | tGg | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 219 | L219del | TTG | --- | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 219 | L219V | Ttg | Gtg | 4 | 4 | B.1.1.218 | 0.030769 |
ORF3a | 219 | L219V | Ttg | Gtg | 4 | 4 | B.1.1.462 | 0.034483 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF3a | 219 | L219del | TTG | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 219 | L219R | TTG | CGA | 3 | 3 | All | 0.000001 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 219 | L219V | Ttg | Gtg | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 219 | L219W | tTg | tGg | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 219 | L219L | Ttg | Ctg | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 219 | L219L | Ttg | Ctg | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | AY.46.6 | 0.000217 |
ORF3a | 219 | L219V | Ttg | Gtg | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 219 | L219V | Ttg | Gtg | 3 | 3 | B.1.1.134 | 0.034091 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | B.1.1.419 | 0.022222 |
ORF3a | 219 | L219K | TTg | AAg | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 219 | L219S | tTg | tCg | 3 | 3 | P.1 | 0.000047 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219R | TTG | CGA | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219K | TTG | AAA | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219P | TTG | CCA | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219Q | TTG | CAA | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219T | TTG | ACA | 2 | 2 | 0.111111 | |
ORF3a | 219 | L219T | TTG | ACA | 2 | 2 | All | 0 |
ORF3a | 219 | L219Q | TTG | CAA | 2 | 2 | All | 0 |
ORF3a | 219 | L219P | TTG | CCA | 2 | 2 | All | 0 |
ORF3a | 219 | L219L | ttG | ttA | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 219 | L219S | tTg | tCg | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 219 | L219L | ttG | ttA | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 219 | L219F | ttG | ttC | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 219 | L219S | tTg | tCg | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 219 | L219V | Ttg | Gtg | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | AY.7.2 | 0.001119 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 219 | L219S | tTg | tCg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.203 | 0.033898 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | B.1.160.17 | 0.003401 |
ORF3a | 219 | L219V | Ttg | Gtg | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 2 | B.1.177 | 0.000013 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 2 | B.1.177 | 0.000013 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 219 | L219V | Ttg | Gtg | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 219 | L219S | tTg | tCg | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 219 | L219S | tTg | tCg | 2 | 2 | B.1.214.1 | 0.04 |
ORF3a | 219 | L219L | ttG | ttA | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 219 | L219V | Ttg | Gtg | 2 | 2 | B.1.343 | 0.041667 |
ORF3a | 219 | L219V | Ttg | Gtg | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | B.1.409 | 0.001563 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.425 | 0.005988 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 2 | B.1.526 | 0.000024 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 2 | B.1.526 | 0.000024 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | C.37 | 0.000232 |
ORF3a | 219 | L219L | Ttg | Ctg | 2 | 2 | N.4 | 0.008511 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 2 | Q.1 | 0.000126 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 2 | Q.1 | 0.000126 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 219 | L219M | Ttg | Atg | 1 | 1 | All | 0 |
ORF3a | 219 | L219X | tTg | tAg | 1 | 1 | All | 0 |
ORF3a | 219 | L219I | TtG | AtA | 1 | 1 | All | 0 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 219 | L219I | TtG | AtA | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 219 | L219X | tTg | tAg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 219 | L219S | tTG | tCT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 219 | L219S | tTG | tCT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B | 0.000128 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF3a | 219 | L219W | tTg | tGg | 1 | 1 | B.1.1.136 | 0.021277 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.16 | 0.055556 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 219 | L219F | ttG | ttC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.363 | 0.005988 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.1.428 | 0.009434 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.437 | 0.010417 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.1.56 | 0.017857 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.433 | 0.003195 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 219 | L219R | TTG | CGA | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 219 | L219L | ttG | ttA | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 219 | L219W | tTg | tGg | 1 | 1 | B.6 | 0.00091 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | C.36 | 0.000911 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | C.4 | 0.01 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 219 | L219M | Ttg | Atg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 219 | L219S | tTg | tCg | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 219 | L219L | Ttg | Ctg | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 219 | L219V | Ttg | Gtg | 1 | 1 | P.2 | 0.000187 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 219 | L219del | TTG | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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