CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 216

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a216S216LnonsyntCatTa138913870.9985626038-26040
ORF3a216S216LnonsynTCaCTa138910.00071994226038-26040
ORF3a216S216LnonsynTCACTC138910.00071994226038-26040
ORF3a216S216PnonsynTcaCca128912870.99844826038-26040
ORF3a216S216PnonsynTcACcG128910.00077579526038-26040
ORF3a216S216PnonsynTcACcC128910.00077579526038-26040
ORF3a216S216SsyntcAtcG2751200.43636426038-26040
ORF3a216S216SsyntcAtcT275900.32727326038-26040
ORF3a216S216SsyntcAtcC275650.23636426038-26040
ORF3a216S216TnonsynTcaAca149149126038-26040
ORF3a216S216AnonsynTcaGca3939126038-26040
ORF3a216S216deldelTCA---2323126038-26040
ORF3a216S216XnonsyntCatAa1111126038-26040
ORF3a216S216VnonsynTCaGTa22126038-26040
ORF3a216S216del1delTCa-Ta22126038-26040
ORF3a216S216YnonsyntCAtAT11126038-26040
ORF3a216S216GnonsynTCAGGC11126038-26040
ORF3a216S216CnonsyntCAtGT11126038-26040

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a216S216LtCatTa13871389All0.000265
ORF3a216S216LTCACTC11389All0
ORF3a216S216LTCaCTa11389All0
ORF3a216S216PTcaCca12871289All0.000246
ORF3a216S216PTcACcC11289All0
ORF3a216S216PTcACcG11289All0
ORF3a216S216PTcaCca505505B.1.4740.960076
ORF3a216S216LtCatTa402402B.1.617.20.001514
ORF3a216S216StcAtcG120275All0.000023
ORF3a216S216StcAtcT90275All0.000017
ORF3a216S216StcAtcC65275All0.000012
ORF3a216S216PTcaCca231231B.10.002116
ORF3a216S216LtCatTa209209P.1.81
ORF3a216S216LtCatTa198200AY.430.000877
ORF3a216S216LTCACTC1200AY.430.000004
ORF3a216S216LTCaCTa1200AY.430.000004
ORF3a216S216LtCatTa186186B.10.001704
ORF3a216S216LtCatTa166166P.10.002615
ORF3a216S216TTcaAca149149All0.000028
ORF3a216S216PTcaCca142142B.1.1.70.000127
ORF3a216S216TTcaAca7878B.1.2580.005191
ORF3a216S216PTcaCca7474B.1.6220.961039
ORF3a216S216PTcaCca7171B.1.6290.946667
ORF3a216S216StcAtcC4160B.1.617.20.000154
ORF3a216S216StcAtcG1860B.1.617.20.000068
ORF3a216S216StcAtcT160B.1.617.20.000004
ORF3a216S216LtCatTa4747B.1.1.70.000042
ORF3a216S216PTcaCca4646B.1.2580.003061
ORF3a216S216PTcaCca4040B.1.617.20.000151
ORF3a216S216ATcaGca3939All0.000007
ORF3a216S216StcAtcT3338B.1.1.70.00003
ORF3a216S216StcAtcG538B.1.1.70.000004
ORF3a216S216TTcaAca3535B.1.36.290.018107
ORF3a216S216LtCatTa3333AY.40.000051
ORF3a216S216LtCatTa2929C.1.20.123404
ORF3a216S216delTCA---2323All0.000004
ORF3a216S216LtCatTa2323AY.1020.00061
ORF3a216S216PTcaCca2323P.10.000362
ORF3a216S216PTcaCca2222C.390.415094
ORF3a216S216StcAtcC1920AY.1000.000874
ORF3a216S216StcAtcT120AY.1000.000046
ORF3a216S216StcAtcG1919B.1.617.10.00245
ORF3a216S216StcAtcT1717B.1.5950.004436
ORF3a216S216LtCatTa1212AY.30.000119
ORF3a216S216StcAtcT512AY.440.00003
ORF3a216S216StcAtcG512AY.440.00003
ORF3a216S216StcAtcC212AY.440.000012
ORF3a216S216XtCatAa1111All0.000002
ORF3a216S216PTcaCca1111P.1.150.002556
ORF3a216S216PTcaCca1010AY.470.000311
ORF3a216S216TTcaAca1010B.1.10.000181
ORF3a216S216LtCatTa99AY.1030.000056
ORF3a216S216PTcaCca99AY.1030.000056
ORF3a216S216PTcaCca89AY.430.000035
ORF3a216S216PTcACcC19AY.430.000004
ORF3a216S216ATcaGca99B.1.5960.000784
ORF3a216S216PTcaCca88AY.250.000048
ORF3a216S216TTcaAca88B.10.000073
ORF3a216S216LtCatTa88B.1.1770.000105
ORF3a216S216StcAtcG78P.10.00011
ORF3a216S216StcAtcT18P.10.000016
ORF3a216S216StcAtcG47AY.40.000006
ORF3a216S216StcAtcT37AY.40.000005
ORF3a216S216LtCatTa77AY.46.60.000505
ORF3a216S216PTcaCca77B.1.10.000127
ORF3a216S216StcAtcG77B.1.1.330.002946
ORF3a216S216LtCatTa77B.1.1.630.002701
ORF3a216S216StcAtcG67B.1.1770.000079
ORF3a216S216StcAtcT17B.1.1770.000013
ORF3a216S216PTcaCca66AY.40.000009
ORF3a216S216delTCA---66AY.430.000027
ORF3a216S216LtCatTa66AY.440.000037
ORF3a216S216StcAtcG66AY.460.000624
ORF3a216S216StcAtcG56B.10.000046
ORF3a216S216StcAtcT16B.10.000009
ORF3a216S216PTcaCca66B.1.3510.000178
ORF3a216S216ATcaGca55AY.250.00003
ORF3a216S216StcAtcG35AY.430.000013
ORF3a216S216StcAtcC15AY.430.000004
ORF3a216S216StcAtcT15AY.430.000004
ORF3a216S216StcAtcT55B.1.20.000044
ORF3a216S216PTcaCca44A0.001548
ORF3a216S216LtCatTa44AY.230.000279
ORF3a216S216StcAtcT44AY.260.000113
ORF3a216S216ATcaGca44AY.30.00004
ORF3a216S216LtCatTa44B.1.10.000073
ORF3a216S216PTcaCca44B.1.3460.005242
ORF3a216S216StcAtcT24B.1.4290.000047
ORF3a216S216StcAtcG24B.1.4290.000047
ORF3a216S216delTCA---44B.1.5250.000453
ORF3a216S216PTcaCca44B.1.5260.000094
ORF3a216S216StcAtcG33AY.1020.00008
ORF3a216S216StcAtcT23AY.1030.000012
ORF3a216S216StcAtcG13AY.1030.000006
ORF3a216S216StcAtcC23AY.1170.000169
ORF3a216S216StcAtcG13AY.1170.000085
ORF3a216S216StcAtcG33AY.1190.000106
ORF3a216S216LtCatTa33AY.250.000018
ORF3a216S216StcAtcG33AY.390.000074
ORF3a216S216ATcaGca33AY.430.000013
ORF3a216S216ATcaGca33AY.440.000018
ORF3a216S216LtCatTa33AY.460.000312
ORF3a216S216PTcaCca33B.1.1770.00004
ORF3a216S216PTcaCca33B.1.20.000026
ORF3a216S216LtCatTa33B.1.2210.000213
ORF3a216S216ATcaGca33B.1.3800.019868
ORF3a216S216TTcaAca33B.1.4290.000071
ORF3a216S216del1TCa-Ta220.111111
ORF3a216S216VTCaGTa220.111111
ORF3a216S216XtCatAa220.111111
ORF3a216S216del1TCa-Ta22All0
ORF3a216S216VTCaGTa22All0
ORF3a216S216PTcaCca22AY.1020.000053
ORF3a216S216PTcaCca22AY.16.10.00094
ORF3a216S216StcAtcT22AY.240.000862
ORF3a216S216StcAtcG22AY.250.000012
ORF3a216S216PTcaCca22AY.260.000057
ORF3a216S216ATcaGca22AY.260.000057
ORF3a216S216PTcaCca22AY.290.000032
ORF3a216S216PTcaCca12AY.30.00001
ORF3a216S216PTcACcG12AY.30.00001
ORF3a216S216PTcaCca22AY.3.10.000171
ORF3a216S216TTcaAca22AY.40.000003
ORF3a216S216StcAtcG22AY.470.000062
ORF3a216S216PTcaCca22AY.50.000041
ORF3a216S216StcAtcT22AY.98.10.000097
ORF3a216S216XtCatAa22B.10.000018
ORF3a216S216StcAtcG22B.1.10.000036
ORF3a216S216PTcaCca22B.1.1.10.000653
ORF3a216S216PTcaCca22B.1.1.370.000386
ORF3a216S216PTcaCca22B.1.1470.001512
ORF3a216S216LtCatTa22B.1.177.70.00033
ORF3a216S216StcAtcG22B.1.2400.000431
ORF3a216S216PTcaCca22B.1.4160.002538
ORF3a216S216PTcaCca22B.1.4270.000101
ORF3a216S216StcAtcG22B.1.4970.00063
ORF3a216S216StcAtcT22B.1.5800.00813
ORF3a216S216PTcaCca22B.1.6090.000959
ORF3a216S216LtCatTa22B.1.617.10.000258
ORF3a216S216LtCatTa22C.36.3.10.005435
ORF3a216S216LtCatTa22C.370.000232
ORF3a216S216StcAtcG12P.20.000187
ORF3a216S216StcAtcT12P.20.000187
ORF3a216S216PTcaCca22Q.80.00033
ORF3a216S216TTcaAca11A.23.10.000704
ORF3a216S216GTCAGGC11All0
ORF3a216S216CtCAtGT11All0
ORF3a216S216YtCAtAT11All0
ORF3a216S216TTcaAca11AY.1030.000006
ORF3a216S216ATcaGca11AY.1190.000035
ORF3a216S216PTcaCca11AY.1190.000035
ORF3a216S216delTCA---11AY.1200.000037
ORF3a216S216ATcaGca11AY.130.000161
ORF3a216S216LtCatTa11AY.16.10.00047
ORF3a216S216ATcaGca11AY.270.000065
ORF3a216S216LtCatTa11AY.29.10.000221
ORF3a216S216StcAtcG11AY.30.00001
ORF3a216S216LtCatTa11AY.34.10.00051
ORF3a216S216LtCatTa11AY.390.000025
ORF3a216S216StcAtcG11AY.39.10.00004
ORF3a216S216ATcaGca11AY.40.000002
ORF3a216S216PTcaCca11AY.420.00004
ORF3a216S216LtCatTa11AY.420.00004
ORF3a216S216PTcaCca11AY.440.000006
ORF3a216S216PTcaCca11AY.46.60.000072
ORF3a216S216StcAtcG11AY.50.000021
ORF3a216S216LtCatTa11AY.590.00053
ORF3a216S216YtCAtAT11AY.670.000464
ORF3a216S216TTcaAca11AY.680.000274
ORF3a216S216delTCA---11AY.680.000274
ORF3a216S216StcAtcG11AY.70.000196
ORF3a216S216StcAtcG11AY.740.000116
ORF3a216S216PTcaCca11AY.780.001541
ORF3a216S216StcAtcT11AY.790.001211
ORF3a216S216PTcaCca11AY.90.000068
ORF3a216S216PTcaCca11AY.9.20.000037
ORF3a216S216ATcaGca11AY.9.20.000037
ORF3a216S216StcAtcG11AY.980.000079
ORF3a216S216LtCatTa11AY.990.001049
ORF3a216S216LtCatTa11B0.000128
ORF3a216S216PTcaCca11B0.000128
ORF3a216S216delTCA---11B.10.000009
ORF3a216S216CtCAtGT11B.1.10.000018
ORF3a216S216LtCatTa11B.1.1.2160.00089
ORF3a216S216delTCA---11B.1.1.250.000569
ORF3a216S216StcAtcG11B.1.1.2840.000107
ORF3a216S216delTCA---11B.1.1.3110.000358
ORF3a216S216PTcaCca11B.1.1.3540.004386
ORF3a216S216PTcaCca11B.1.1.390.00051
ORF3a216S216TTcaAca11B.1.1.4090.002833
ORF3a216S216LtCatTa11B.1.1.4200.001006
ORF3a216S216LtCatTa11B.1.1.50.008333
ORF3a216S216delTCA---11B.1.1.70.000001
ORF3a216S216ATcaGca11B.1.1.70.000001
ORF3a216S216ATcaGca11B.1.1.700.000341
ORF3a216S216StcAtcT11B.1.1280.000635
ORF3a216S216PTcaCca11B.1.1570.002985
ORF3a216S216delTCA---11B.1.1770.000013
ORF3a216S216PTcaCca11B.1.177.270.009434
ORF3a216S216PTcaCca11B.1.177.620.001192
ORF3a216S216delTCA---11B.1.177.730.000566
ORF3a216S216XtCatAa11B.1.177.730.000566
ORF3a216S216PTcaCca11B.1.177.820.000477
ORF3a216S216delTCA---11B.1.20.000009
ORF3a216S216TTcaAca11B.1.20.000009
ORF3a216S216TTcaAca11B.1.2340.000132
ORF3a216S216PTcaCca11B.1.2340.000132
ORF3a216S216LtCatTa11B.1.2390.001221
ORF3a216S216XtCatAa11B.1.2430.00007
ORF3a216S216TTcaAca11B.1.258.120.007874
ORF3a216S216XtCatAa11B.1.2600.003344
ORF3a216S216StcAtcG11B.1.3510.00003
ORF3a216S216XtCatAa11B.1.351.20.000303
ORF3a216S216StcAtcT11B.1.360.000146
ORF3a216S216PTcaCca11B.1.360.000146
ORF3a216S216TTcaAca11B.1.36.170.000494
ORF3a216S216PTcaCca11B.1.36.290.000517
ORF3a216S216LtCatTa11B.1.3770.004566
ORF3a216S216StcAtcG11B.1.4110.003704
ORF3a216S216StcAtcG11B.1.4270.00005
ORF3a216S216ATcaGca11B.1.4270.00005
ORF3a216S216PTcaCca11B.1.4600.017857
ORF3a216S216TTcaAca11B.1.4620.007246
ORF3a216S216LtCatTa11B.1.466.20.000391
ORF3a216S216XtCatAa11B.1.466.20.000391
ORF3a216S216TTcaAca11B.1.4970.000315
ORF3a216S216XtCatAa11B.1.4970.000315
ORF3a216S216GTCAGGC11B.1.4970.000315
ORF3a216S216ATcaGca11B.1.4990.00105
ORF3a216S216PTcaCca11B.1.5250.000113
ORF3a216S216TTcaAca11B.1.5330.009615
ORF3a216S216PTcaCca11B.1.5440.006024
ORF3a216S216PTcaCca11B.1.5600.00463
ORF3a216S216PTcaCca11B.1.5610.000397
ORF3a216S216delTCA---11B.1.5770.000687
ORF3a216S216delTCA---11B.1.617.20.000004
ORF3a216S216StcAtcT11B.1.6260.005714
ORF3a216S216XtCatAa11B.4.50.011905
ORF3a216S216PTcaCca11B.60.00091
ORF3a216S216LtCatTa11C.10.002392
ORF3a216S216StcAtcT11C.370.000116
ORF3a216S216TTcaAca11N.30.005814
ORF3a216S216TTcaAca11N.40.004255
ORF3a216S216ATcaGca11P.10.000016
ORF3a216S216LtCatTa11P.1.10.000318
ORF3a216S216LtCatTa11P.1.130.000898
ORF3a216S216StcAtcT11P.1.140.000048
ORF3a216S216LtCatTa11P.1.160.000374
ORF3a216S216LtCatTa11P.1.70.000319
ORF3a216S216delTCA---11Q.10.000126
ORF3a216S216LtCatTa11Q.10.000126
ORF3a216S216StcAtcG11Q.80.000165
ORF3a216S216delTCA---11R.10.00009