CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 216 | S216L | nonsyn | tCa | tTa | 1389 | 1387 | 0.99856 | 26038-26040 | |
ORF3a | 216 | S216L | nonsyn | TCa | CTa | 1389 | 1 | 0.000719942 | 26038-26040 | |
ORF3a | 216 | S216L | nonsyn | TCA | CTC | 1389 | 1 | 0.000719942 | 26038-26040 | |
ORF3a | 216 | S216P | nonsyn | Tca | Cca | 1289 | 1287 | 0.998448 | 26038-26040 | |
ORF3a | 216 | S216P | nonsyn | TcA | CcG | 1289 | 1 | 0.000775795 | 26038-26040 | |
ORF3a | 216 | S216P | nonsyn | TcA | CcC | 1289 | 1 | 0.000775795 | 26038-26040 | |
ORF3a | 216 | S216S | syn | tcA | tcG | 275 | 120 | 0.436364 | 26038-26040 | |
ORF3a | 216 | S216S | syn | tcA | tcT | 275 | 90 | 0.327273 | 26038-26040 | |
ORF3a | 216 | S216S | syn | tcA | tcC | 275 | 65 | 0.236364 | 26038-26040 | |
ORF3a | 216 | S216T | nonsyn | Tca | Aca | 149 | 149 | 1 | 26038-26040 | |
ORF3a | 216 | S216A | nonsyn | Tca | Gca | 39 | 39 | 1 | 26038-26040 | |
ORF3a | 216 | S216del | del | TCA | --- | 23 | 23 | 1 | 26038-26040 | |
ORF3a | 216 | S216X | nonsyn | tCa | tAa | 11 | 11 | 1 | 26038-26040 | |
ORF3a | 216 | S216V | nonsyn | TCa | GTa | 2 | 2 | 1 | 26038-26040 | |
ORF3a | 216 | S216del1 | del | TCa | -Ta | 2 | 2 | 1 | 26038-26040 | |
ORF3a | 216 | S216Y | nonsyn | tCA | tAT | 1 | 1 | 1 | 26038-26040 | |
ORF3a | 216 | S216G | nonsyn | TCA | GGC | 1 | 1 | 1 | 26038-26040 | |
ORF3a | 216 | S216C | nonsyn | tCA | tGT | 1 | 1 | 1 | 26038-26040 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 216 | S216L | tCa | tTa | 1387 | 1389 | All | 0.000265 |
ORF3a | 216 | S216L | TCA | CTC | 1 | 1389 | All | 0 |
ORF3a | 216 | S216L | TCa | CTa | 1 | 1389 | All | 0 |
ORF3a | 216 | S216P | Tca | Cca | 1287 | 1289 | All | 0.000246 |
ORF3a | 216 | S216P | TcA | CcC | 1 | 1289 | All | 0 |
ORF3a | 216 | S216P | TcA | CcG | 1 | 1289 | All | 0 |
ORF3a | 216 | S216P | Tca | Cca | 505 | 505 | B.1.474 | 0.960076 |
ORF3a | 216 | S216L | tCa | tTa | 402 | 402 | B.1.617.2 | 0.001514 |
ORF3a | 216 | S216S | tcA | tcG | 120 | 275 | All | 0.000023 |
ORF3a | 216 | S216S | tcA | tcT | 90 | 275 | All | 0.000017 |
ORF3a | 216 | S216S | tcA | tcC | 65 | 275 | All | 0.000012 |
ORF3a | 216 | S216P | Tca | Cca | 231 | 231 | B.1 | 0.002116 |
ORF3a | 216 | S216L | tCa | tTa | 209 | 209 | P.1.8 | 1 |
ORF3a | 216 | S216L | tCa | tTa | 198 | 200 | AY.43 | 0.000877 |
ORF3a | 216 | S216L | TCA | CTC | 1 | 200 | AY.43 | 0.000004 |
ORF3a | 216 | S216L | TCa | CTa | 1 | 200 | AY.43 | 0.000004 |
ORF3a | 216 | S216L | tCa | tTa | 186 | 186 | B.1 | 0.001704 |
ORF3a | 216 | S216L | tCa | tTa | 166 | 166 | P.1 | 0.002615 |
ORF3a | 216 | S216T | Tca | Aca | 149 | 149 | All | 0.000028 |
ORF3a | 216 | S216P | Tca | Cca | 142 | 142 | B.1.1.7 | 0.000127 |
ORF3a | 216 | S216T | Tca | Aca | 78 | 78 | B.1.258 | 0.005191 |
ORF3a | 216 | S216P | Tca | Cca | 74 | 74 | B.1.622 | 0.961039 |
ORF3a | 216 | S216P | Tca | Cca | 71 | 71 | B.1.629 | 0.946667 |
ORF3a | 216 | S216S | tcA | tcC | 41 | 60 | B.1.617.2 | 0.000154 |
ORF3a | 216 | S216S | tcA | tcG | 18 | 60 | B.1.617.2 | 0.000068 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 60 | B.1.617.2 | 0.000004 |
ORF3a | 216 | S216L | tCa | tTa | 47 | 47 | B.1.1.7 | 0.000042 |
ORF3a | 216 | S216P | Tca | Cca | 46 | 46 | B.1.258 | 0.003061 |
ORF3a | 216 | S216P | Tca | Cca | 40 | 40 | B.1.617.2 | 0.000151 |
ORF3a | 216 | S216A | Tca | Gca | 39 | 39 | All | 0.000007 |
ORF3a | 216 | S216S | tcA | tcT | 33 | 38 | B.1.1.7 | 0.00003 |
ORF3a | 216 | S216S | tcA | tcG | 5 | 38 | B.1.1.7 | 0.000004 |
ORF3a | 216 | S216T | Tca | Aca | 35 | 35 | B.1.36.29 | 0.018107 |
ORF3a | 216 | S216L | tCa | tTa | 33 | 33 | AY.4 | 0.000051 |
ORF3a | 216 | S216L | tCa | tTa | 29 | 29 | C.1.2 | 0.123404 |
ORF3a | 216 | S216del | TCA | --- | 23 | 23 | All | 0.000004 |
ORF3a | 216 | S216L | tCa | tTa | 23 | 23 | AY.102 | 0.00061 |
ORF3a | 216 | S216P | Tca | Cca | 23 | 23 | P.1 | 0.000362 |
ORF3a | 216 | S216P | Tca | Cca | 22 | 22 | C.39 | 0.415094 |
ORF3a | 216 | S216S | tcA | tcC | 19 | 20 | AY.100 | 0.000874 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 20 | AY.100 | 0.000046 |
ORF3a | 216 | S216S | tcA | tcG | 19 | 19 | B.1.617.1 | 0.00245 |
ORF3a | 216 | S216S | tcA | tcT | 17 | 17 | B.1.595 | 0.004436 |
ORF3a | 216 | S216L | tCa | tTa | 12 | 12 | AY.3 | 0.000119 |
ORF3a | 216 | S216S | tcA | tcT | 5 | 12 | AY.44 | 0.00003 |
ORF3a | 216 | S216S | tcA | tcG | 5 | 12 | AY.44 | 0.00003 |
ORF3a | 216 | S216S | tcA | tcC | 2 | 12 | AY.44 | 0.000012 |
ORF3a | 216 | S216X | tCa | tAa | 11 | 11 | All | 0.000002 |
ORF3a | 216 | S216P | Tca | Cca | 11 | 11 | P.1.15 | 0.002556 |
ORF3a | 216 | S216P | Tca | Cca | 10 | 10 | AY.47 | 0.000311 |
ORF3a | 216 | S216T | Tca | Aca | 10 | 10 | B.1.1 | 0.000181 |
ORF3a | 216 | S216L | tCa | tTa | 9 | 9 | AY.103 | 0.000056 |
ORF3a | 216 | S216P | Tca | Cca | 9 | 9 | AY.103 | 0.000056 |
ORF3a | 216 | S216P | Tca | Cca | 8 | 9 | AY.43 | 0.000035 |
ORF3a | 216 | S216P | TcA | CcC | 1 | 9 | AY.43 | 0.000004 |
ORF3a | 216 | S216A | Tca | Gca | 9 | 9 | B.1.596 | 0.000784 |
ORF3a | 216 | S216P | Tca | Cca | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 216 | S216T | Tca | Aca | 8 | 8 | B.1 | 0.000073 |
ORF3a | 216 | S216L | tCa | tTa | 8 | 8 | B.1.177 | 0.000105 |
ORF3a | 216 | S216S | tcA | tcG | 7 | 8 | P.1 | 0.00011 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 8 | P.1 | 0.000016 |
ORF3a | 216 | S216S | tcA | tcG | 4 | 7 | AY.4 | 0.000006 |
ORF3a | 216 | S216S | tcA | tcT | 3 | 7 | AY.4 | 0.000005 |
ORF3a | 216 | S216L | tCa | tTa | 7 | 7 | AY.46.6 | 0.000505 |
ORF3a | 216 | S216P | Tca | Cca | 7 | 7 | B.1.1 | 0.000127 |
ORF3a | 216 | S216S | tcA | tcG | 7 | 7 | B.1.1.33 | 0.002946 |
ORF3a | 216 | S216L | tCa | tTa | 7 | 7 | B.1.1.63 | 0.002701 |
ORF3a | 216 | S216S | tcA | tcG | 6 | 7 | B.1.177 | 0.000079 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 7 | B.1.177 | 0.000013 |
ORF3a | 216 | S216P | Tca | Cca | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 216 | S216del | TCA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 216 | S216L | tCa | tTa | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 216 | S216S | tcA | tcG | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 216 | S216S | tcA | tcG | 5 | 6 | B.1 | 0.000046 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 6 | B.1 | 0.000009 |
ORF3a | 216 | S216P | Tca | Cca | 6 | 6 | B.1.351 | 0.000178 |
ORF3a | 216 | S216A | Tca | Gca | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 216 | S216S | tcA | tcG | 3 | 5 | AY.43 | 0.000013 |
ORF3a | 216 | S216S | tcA | tcC | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 216 | S216S | tcA | tcT | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 216 | S216P | Tca | Cca | 4 | 4 | A | 0.001548 |
ORF3a | 216 | S216L | tCa | tTa | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 216 | S216S | tcA | tcT | 4 | 4 | AY.26 | 0.000113 |
ORF3a | 216 | S216A | Tca | Gca | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 216 | S216L | tCa | tTa | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 216 | S216P | Tca | Cca | 4 | 4 | B.1.346 | 0.005242 |
ORF3a | 216 | S216S | tcA | tcT | 2 | 4 | B.1.429 | 0.000047 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 4 | B.1.429 | 0.000047 |
ORF3a | 216 | S216del | TCA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 216 | S216P | Tca | Cca | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 216 | S216S | tcA | tcG | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 216 | S216S | tcA | tcT | 2 | 3 | AY.103 | 0.000012 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 3 | AY.103 | 0.000006 |
ORF3a | 216 | S216S | tcA | tcC | 2 | 3 | AY.117 | 0.000169 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 3 | AY.117 | 0.000085 |
ORF3a | 216 | S216S | tcA | tcG | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 216 | S216L | tCa | tTa | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 216 | S216S | tcA | tcG | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 216 | S216A | Tca | Gca | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 216 | S216A | Tca | Gca | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 216 | S216L | tCa | tTa | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 216 | S216P | Tca | Cca | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 216 | S216P | Tca | Cca | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 216 | S216L | tCa | tTa | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 216 | S216A | Tca | Gca | 3 | 3 | B.1.380 | 0.019868 |
ORF3a | 216 | S216T | Tca | Aca | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 216 | S216del1 | TCa | -Ta | 2 | 2 | 0.111111 | |
ORF3a | 216 | S216V | TCa | GTa | 2 | 2 | 0.111111 | |
ORF3a | 216 | S216X | tCa | tAa | 2 | 2 | 0.111111 | |
ORF3a | 216 | S216del1 | TCa | -Ta | 2 | 2 | All | 0 |
ORF3a | 216 | S216V | TCa | GTa | 2 | 2 | All | 0 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 216 | S216S | tcA | tcT | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 216 | S216A | Tca | Gca | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 2 | AY.3 | 0.00001 |
ORF3a | 216 | S216P | TcA | CcG | 1 | 2 | AY.3 | 0.00001 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 216 | S216T | Tca | Aca | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 216 | S216S | tcA | tcT | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 216 | S216X | tCa | tAa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 216 | S216L | tCa | tTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.416 | 0.002538 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 216 | S216S | tcA | tcG | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 216 | S216S | tcA | tcT | 2 | 2 | B.1.580 | 0.00813 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 216 | S216L | tCa | tTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 216 | S216L | tCa | tTa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF3a | 216 | S216L | tCa | tTa | 2 | 2 | C.37 | 0.000232 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 2 | P.2 | 0.000187 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 2 | P.2 | 0.000187 |
ORF3a | 216 | S216P | Tca | Cca | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 216 | S216G | TCA | GGC | 1 | 1 | All | 0 |
ORF3a | 216 | S216C | tCA | tGT | 1 | 1 | All | 0 |
ORF3a | 216 | S216Y | tCA | tAT | 1 | 1 | All | 0 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 216 | S216Y | tCA | tAT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B | 0.000128 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B | 0.000128 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 216 | S216C | tCA | tGT | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.1.5 | 0.008333 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.177.27 | 0.009434 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | B.1.411 | 0.003704 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.460 | 0.017857 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 216 | S216G | TCA | GGC | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.544 | 0.006024 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | B.1.626 | 0.005714 |
ORF3a | 216 | S216X | tCa | tAa | 1 | 1 | B.4.5 | 0.011905 |
ORF3a | 216 | S216P | Tca | Cca | 1 | 1 | B.6 | 0.00091 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | C.1 | 0.002392 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | N.3 | 0.005814 |
ORF3a | 216 | S216T | Tca | Aca | 1 | 1 | N.4 | 0.004255 |
ORF3a | 216 | S216A | Tca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 216 | S216S | tcA | tcT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 216 | S216L | tCa | tTa | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 216 | S216S | tcA | tcG | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 216 | S216del | TCA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|