CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 213 & Codon = cTg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a213Q213LnonsyncAgcTg388388126029-26031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a213Q213LcAgcTg388388All0.000074
ORF3a213Q213LcAgcTg138138B.1.9.40.846626
ORF3a213Q213LcAgcTg107107B.10.00098
ORF3a213Q213LcAgcTg7676B.1.1.70.000068
ORF3a213Q213LcAgcTg2525AY.40.000039
ORF3a213Q213LcAgcTg1010AY.1200.000372
ORF3a213Q213LcAgcTg66B.1.90.037037
ORF3a213Q213LcAgcTg44B.1.4250.011976
ORF3a213Q213LcAgcTg44B.1.9.50.022727
ORF3a213Q213LcAgcTg33B0.000383
ORF3a213Q213LcAgcTg22AY.260.000057
ORF3a213Q213LcAgcTg22AY.3.10.000171
ORF3a213Q213LcAgcTg22B.1.20.000018
ORF3a213Q213LcAgcTg22B.1.3240.00321
ORF3a213Q213LcAgcTg11AY.1030.000006
ORF3a213Q213LcAgcTg11AY.30.00001
ORF3a213Q213LcAgcTg11AY.540.000095
ORF3a213Q213LcAgcTg11AY.610.000105
ORF3a213Q213LcAgcTg11AY.990.001049
ORF3a213Q213LcAgcTg11B.1.177.860.000183
ORF3a213Q213LcAgcTg11B.1.617.10.000129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.