CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 213 | Q213K | nonsyn | Cag | Aag | 2662 | 2662 | 1 | 26029-26031 | |
ORF3a | 213 | Q213H | nonsyn | caG | caT | 1715 | 1714 | 0.999417 | 26029-26031 | |
ORF3a | 213 | Q213H | nonsyn | caG | caC | 1715 | 1 | 0.00058309 | 26029-26031 | |
ORF3a | 213 | Q213L | nonsyn | cAg | cTg | 388 | 388 | 1 | 26029-26031 | |
ORF3a | 213 | Q213Q | syn | caG | caA | 285 | 285 | 1 | 26029-26031 | |
ORF3a | 213 | Q213R | nonsyn | cAg | cGg | 170 | 167 | 0.982353 | 26029-26031 | |
ORF3a | 213 | Q213R | nonsyn | cAG | cGT | 170 | 2 | 0.0117647 | 26029-26031 | |
ORF3a | 213 | Q213R | nonsyn | cAG | cGA | 170 | 1 | 0.00588235 | 26029-26031 | |
ORF3a | 213 | Q213X | nonsyn | Cag | Tag | 36 | 35 | 0.972222 | 26029-26031 | |
ORF3a | 213 | Q213X | nonsyn | CaG | TaA | 36 | 1 | 0.0277778 | 26029-26031 | |
ORF3a | 213 | Q213E | nonsyn | Cag | Gag | 31 | 31 | 1 | 26029-26031 | |
ORF3a | 213 | Q213del | del | CAG | --- | 21 | 21 | 1 | 26029-26031 | |
ORF3a | 213 | Q213Y | nonsyn | CaG | TaT | 11 | 11 | 1 | 26029-26031 | |
ORF3a | 213 | Q213W | nonsyn | CAg | TGg | 6 | 6 | 1 | 26029-26031 | |
ORF3a | 213 | Q213S | nonsyn | CAg | TCg | 3 | 3 | 1 | 26029-26031 | |
ORF3a | 213 | Q213del1 | del | CaG | -aC | 3 | 2 | 0.666667 | 26029-26031 | |
ORF3a | 213 | Q213del1 | del | caG | ca- | 3 | 1 | 0.333333 | 26029-26031 | |
ORF3a | 213 | Q213C | nonsyn | CAG | TGT | 2 | 2 | 1 | 26029-26031 | |
ORF3a | 213 | Q213M | nonsyn | CAg | ATg | 1 | 1 | 1 | 26029-26031 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 213 | Q213K | Cag | Aag | 2662 | 2662 | All | 0.000509 |
ORF3a | 213 | Q213H | caG | caT | 1714 | 1715 | All | 0.000328 |
ORF3a | 213 | Q213H | caG | caC | 1 | 1715 | All | 0 |
ORF3a | 213 | Q213H | caG | caT | 1071 | 1071 | B.1.1.7 | 0.000959 |
ORF3a | 213 | Q213K | Cag | Aag | 649 | 649 | B.1.1.7 | 0.000581 |
ORF3a | 213 | Q213L | cAg | cTg | 388 | 388 | All | 0.000074 |
ORF3a | 213 | Q213H | caG | caT | 355 | 355 | AY.119 | 0.012534 |
ORF3a | 213 | Q213Q | caG | caA | 285 | 285 | All | 0.000055 |
ORF3a | 213 | Q213K | Cag | Aag | 201 | 201 | A.2.3 | 0.952607 |
ORF3a | 213 | Q213R | cAg | cGg | 167 | 170 | All | 0.000032 |
ORF3a | 213 | Q213R | cAG | cGT | 2 | 170 | All | 0 |
ORF3a | 213 | Q213R | cAG | cGA | 1 | 170 | All | 0 |
ORF3a | 213 | Q213K | Cag | Aag | 164 | 164 | AY.4 | 0.000255 |
ORF3a | 213 | Q213Q | caG | caA | 139 | 139 | AY.25 | 0.000836 |
ORF3a | 213 | Q213L | cAg | cTg | 138 | 138 | B.1.9.4 | 0.846626 |
ORF3a | 213 | Q213H | caG | caT | 108 | 108 | AY.12 | 0.034134 |
ORF3a | 213 | Q213L | cAg | cTg | 107 | 107 | B.1 | 0.00098 |
ORF3a | 213 | Q213K | Cag | Aag | 107 | 107 | B.1.177.21 | 0.008182 |
ORF3a | 213 | Q213K | Cag | Aag | 97 | 97 | B.1.617.2 | 0.000365 |
ORF3a | 213 | Q213K | Cag | Aag | 90 | 90 | AY.43 | 0.000399 |
ORF3a | 213 | Q213K | Cag | Aag | 78 | 78 | B.1.1 | 0.001415 |
ORF3a | 213 | Q213L | cAg | cTg | 76 | 76 | B.1.1.7 | 0.000068 |
ORF3a | 213 | Q213K | Cag | Aag | 64 | 64 | B.1.2 | 0.000564 |
ORF3a | 213 | Q213R | cAg | cGg | 62 | 62 | AY.73 | 0.041251 |
ORF3a | 213 | Q213K | Cag | Aag | 58 | 58 | B.1 | 0.000531 |
ORF3a | 213 | Q213K | Cag | Aag | 58 | 58 | P.1 | 0.000914 |
ORF3a | 213 | Q213K | Cag | Aag | 56 | 56 | C.37 | 0.0065 |
ORF3a | 213 | Q213K | Cag | Aag | 53 | 53 | AY.103 | 0.000329 |
ORF3a | 213 | Q213K | Cag | Aag | 52 | 52 | AY.5 | 0.001074 |
ORF3a | 213 | Q213K | Cag | Aag | 49 | 49 | AY.25 | 0.000295 |
ORF3a | 213 | Q213K | Cag | Aag | 41 | 41 | AY.44 | 0.00025 |
ORF3a | 213 | Q213X | Cag | Tag | 35 | 36 | All | 0.000007 |
ORF3a | 213 | Q213X | CaG | TaA | 1 | 36 | All | 0 |
ORF3a | 213 | Q213K | Cag | Aag | 34 | 34 | B.1.1.486 | 0.053628 |
ORF3a | 213 | Q213K | Cag | Aag | 34 | 34 | B.1.177 | 0.000448 |
ORF3a | 213 | Q213K | Cag | Aag | 34 | 34 | B.1.639 | 0.73913 |
ORF3a | 213 | Q213K | Cag | Aag | 33 | 33 | AY.60 | 0.030957 |
ORF3a | 213 | Q213H | caG | caT | 33 | 33 | B.1.177.10 | 0.028973 |
ORF3a | 213 | Q213E | Cag | Gag | 31 | 31 | All | 0.000006 |
ORF3a | 213 | Q213Q | caG | caA | 31 | 31 | B.1.1.7 | 0.000028 |
ORF3a | 213 | Q213K | Cag | Aag | 30 | 30 | AY.95 | 0.022831 |
ORF3a | 213 | Q213K | Cag | Aag | 29 | 29 | AY.39 | 0.000717 |
ORF3a | 213 | Q213K | Cag | Aag | 28 | 28 | B.1.1.28 | 0.008715 |
ORF3a | 213 | Q213E | Cag | Gag | 26 | 26 | AY.4 | 0.00004 |
ORF3a | 213 | Q213L | cAg | cTg | 25 | 25 | AY.4 | 0.000039 |
ORF3a | 213 | Q213K | Cag | Aag | 23 | 23 | B.1.1.519 | 0.000913 |
ORF3a | 213 | Q213K | Cag | Aag | 23 | 23 | B.1.258 | 0.001531 |
ORF3a | 213 | Q213K | Cag | Aag | 22 | 22 | A.2.5.1 | 0.105769 |
ORF3a | 213 | Q213del | CAG | --- | 21 | 21 | All | 0.000004 |
ORF3a | 213 | Q213K | Cag | Aag | 21 | 21 | B.1.617.1 | 0.002708 |
ORF3a | 213 | Q213H | caG | caT | 21 | 21 | B.1.617.2 | 0.000079 |
ORF3a | 213 | Q213H | caG | caT | 20 | 20 | AY.4 | 0.000031 |
ORF3a | 213 | Q213K | Cag | Aag | 20 | 20 | B.1.1.70 | 0.006821 |
ORF3a | 213 | Q213Q | caG | caA | 19 | 19 | AY.103 | 0.000118 |
ORF3a | 213 | Q213R | cAg | cGg | 18 | 18 | AY.9.1 | 0.001507 |
ORF3a | 213 | Q213R | cAg | cGg | 18 | 18 | B.1.1.7 | 0.000016 |
ORF3a | 213 | Q213R | cAg | cGg | 18 | 18 | B.1.617.2 | 0.000068 |
ORF3a | 213 | Q213K | Cag | Aag | 17 | 17 | AY.3 | 0.000169 |
ORF3a | 213 | Q213K | Cag | Aag | 16 | 16 | AY.102 | 0.000424 |
ORF3a | 213 | Q213K | Cag | Aag | 16 | 16 | AY.113 | 0.002278 |
ORF3a | 213 | Q213H | caG | caT | 16 | 16 | B.1.595 | 0.004175 |
ORF3a | 213 | Q213Q | caG | caA | 15 | 15 | AY.44 | 0.000091 |
ORF3a | 213 | Q213K | Cag | Aag | 15 | 15 | AY.69 | 0.0028 |
ORF3a | 213 | Q213K | Cag | Aag | 13 | 13 | AY.46.6 | 0.000939 |
ORF3a | 213 | Q213K | Cag | Aag | 12 | 12 | AY.9 | 0.000811 |
ORF3a | 213 | Q213K | Cag | Aag | 12 | 12 | B.1.1.1 | 0.00392 |
ORF3a | 213 | Q213Y | CaG | TaT | 11 | 11 | All | 0.000002 |
ORF3a | 213 | Q213K | Cag | Aag | 11 | 11 | AY.4.2 | 0.000239 |
ORF3a | 213 | Q213K | Cag | Aag | 11 | 11 | AY.47 | 0.000342 |
ORF3a | 213 | Q213K | Cag | Aag | 11 | 11 | B.1.429 | 0.000259 |
ORF3a | 213 | Q213L | cAg | cTg | 10 | 10 | AY.120 | 0.000372 |
ORF3a | 213 | Q213Q | caG | caA | 10 | 10 | AY.43 | 0.000044 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | AE.8 | 0.004401 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | AY.120 | 0.000335 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | AY.39.1 | 0.000357 |
ORF3a | 213 | Q213Q | caG | caA | 9 | 9 | AY.4 | 0.000014 |
ORF3a | 213 | Q213H | caG | caT | 9 | 9 | AY.43 | 0.00004 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | AY.75 | 0.000504 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | B.1.1.189 | 0.013616 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | B.1.1.525 | 0.04918 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | B.1.427 | 0.000454 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | B.1.526 | 0.000212 |
ORF3a | 213 | Q213K | Cag | Aag | 9 | 9 | B.1.637 | 0.000658 |
ORF3a | 213 | Q213K | Cag | Aag | 8 | 8 | AY.20 | 0.000311 |
ORF3a | 213 | Q213H | caG | caT | 8 | 8 | B.1 | 0.000073 |
ORF3a | 213 | Q213K | Cag | Aag | 7 | 7 | AY.29 | 0.00011 |
ORF3a | 213 | Q213K | Cag | Aag | 7 | 7 | B.1.258.14 | 0.006863 |
ORF3a | 213 | Q213K | Cag | Aag | 7 | 7 | B.1.258.16 | 0.011457 |
ORF3a | 213 | Q213H | caG | caT | 7 | 7 | B.28 | 0.022951 |
ORF3a | 213 | Q213W | CAg | TGg | 6 | 6 | All | 0.000001 |
ORF3a | 213 | Q213H | caG | caT | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 213 | Q213K | Cag | Aag | 6 | 6 | B.1.1.67 | 0.027397 |
ORF3a | 213 | Q213L | cAg | cTg | 6 | 6 | B.1.9 | 0.037037 |
ORF3a | 213 | Q213K | Cag | Aag | 6 | 6 | D.2 | 0.00045 |
ORF3a | 213 | Q213K | Cag | Aag | 6 | 6 | L.3 | 0.021277 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | AY.118 | 0.000313 |
ORF3a | 213 | Q213H | caG | caT | 5 | 5 | AY.120 | 0.000186 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | AY.26 | 0.000142 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 213 | Q213H | caG | caT | 5 | 5 | AY.39 | 0.000124 |
ORF3a | 213 | Q213X | Cag | Tag | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 213 | Q213R | cAg | cGg | 5 | 5 | B.1 | 0.000046 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | B.1.1.214 | 0.000277 |
ORF3a | 213 | Q213X | Cag | Tag | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | B.1.351 | 0.000149 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | B.1.561 | 0.001985 |
ORF3a | 213 | Q213Q | caG | caA | 5 | 5 | P.1 | 0.000079 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | P.1.15 | 0.001162 |
ORF3a | 213 | Q213K | Cag | Aag | 5 | 5 | Q.3 | 0.000725 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | A.1 | 0.001127 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | AY.107 | 0.001864 |
ORF3a | 213 | Q213R | cAg | cGg | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 213 | Q213W | CAg | TGg | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | B.1.1.317 | 0.001647 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | B.1.1.368 | 0.012346 |
ORF3a | 213 | Q213Q | caG | caA | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | B.1.243 | 0.000278 |
ORF3a | 213 | Q213L | cAg | cTg | 4 | 4 | B.1.425 | 0.011976 |
ORF3a | 213 | Q213del | CAG | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 213 | Q213K | Cag | Aag | 4 | 4 | B.1.582 | 0.001963 |
ORF3a | 213 | Q213Q | caG | caA | 4 | 4 | B.1.589 | 0.030303 |
ORF3a | 213 | Q213X | Cag | Tag | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 213 | Q213L | cAg | cTg | 4 | 4 | B.1.9.5 | 0.022727 |
ORF3a | 213 | Q213S | CAg | TCg | 3 | 3 | All | 0.000001 |
ORF3a | 213 | Q213del1 | CaG | -aC | 2 | 3 | All | 0 |
ORF3a | 213 | Q213del1 | caG | ca- | 1 | 3 | All | 0 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.100 | 0.000138 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.14 | 0.000264 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 213 | Q213R | cAg | cGg | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.36 | 0.000445 |
ORF3a | 213 | Q213R | cAg | cGg | 3 | 3 | AY.37 | 0.000948 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.39.1.1 | 0.002174 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.41 | 0.000882 |
ORF3a | 213 | Q213R | cAg | cGg | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 213 | Q213del | CAG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | AY.64 | 0.001786 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | AZ.3 | 0.004559 |
ORF3a | 213 | Q213L | cAg | cTg | 3 | 3 | B | 0.000383 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | B.1 | 0.000027 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 3 | B.1.2 | 0.000018 |
ORF3a | 213 | Q213R | cAG | cGT | 1 | 3 | B.1.2 | 0.000009 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.499 | 0.003151 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 213 | Q213Y | CaG | TaT | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 213 | Q213Q | caG | caA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 213 | Q213K | Cag | Aag | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 213 | Q213del | CAG | --- | 2 | 2 | 0.111111 | |
ORF3a | 213 | Q213C | CAG | TGT | 2 | 2 | 0.111111 | |
ORF3a | 213 | Q213del1 | CaG | -aC | 2 | 2 | 0.111111 | |
ORF3a | 213 | Q213C | CAG | TGT | 2 | 2 | All | 0 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 213 | Q213L | cAg | cTg | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 213 | Q213L | cAg | cTg | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 213 | Q213X | Cag | Tag | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 213 | Q213X | Cag | Tag | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 213 | Q213Q | caG | caA | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 213 | Q213Y | CaG | TaT | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | AZ.2 | 0.001642 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | B.1.1.307 | 0.005063 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 2 | B.1.1.416 | 0.00181 |
ORF3a | 213 | Q213Y | CaG | TaT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.177.75 | 0.002081 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.177.77 | 0.001452 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 213 | Q213L | cAg | cTg | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 213 | Q213X | Cag | Tag | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 213 | Q213E | Cag | Gag | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.239 | 0.002442 |
ORF3a | 213 | Q213Q | caG | caA | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 213 | Q213L | cAg | cTg | 2 | 2 | B.1.324 | 0.00321 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 213 | Q213R | cAg | cGg | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 213 | Q213R | cAG | cGT | 1 | 2 | B.1.596 | 0.000087 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 2 | B.1.596 | 0.000087 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.1.93 | 0.001867 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | B.4 | 0.004415 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | C.30 | 0.003454 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | C.37 | 0.000232 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | C.8 | 0.008929 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | P.1 | 0.000032 |
ORF3a | 213 | Q213Q | caG | caA | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 213 | Q213H | caG | caT | 2 | 2 | R.1 | 0.00018 |
ORF3a | 213 | Q213K | Cag | Aag | 2 | 2 | R.1 | 0.00018 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | A | 0.000387 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | A.2 | 0.000662 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | A.2 | 0.000662 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 213 | Q213M | CAg | ATg | 1 | 1 | All | 0 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 213 | Q213S | CAg | TCg | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 213 | Q213Y | CaG | TaT | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 213 | Q213E | Cag | Gag | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 213 | Q213W | CAg | TGg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 213 | Q213M | CAg | ATg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 213 | Q213Y | CaG | TaT | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 213 | Q213S | CAg | TCg | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 213 | Q213R | cAG | cGA | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.97 | 0.001701 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B | 0.000128 |
ORF3a | 213 | Q213E | Cag | Gag | 1 | 1 | B.1 | 0.000009 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 213 | Q213Y | CaG | TaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.3 | 0.008696 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.333 | 0.001076 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.1.347 | 0.018182 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.349 | 0.010309 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.453 | 0.008475 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 213 | Q213Y | CaG | TaT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 213 | Q213S | CAg | TCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.134 | 0.005464 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.160.18 | 0.007299 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 213 | Q213del1 | caG | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 213 | Q213W | CAg | TGg | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.406 | 0.006061 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.424 | 0.008065 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.474 | 0.001901 |
ORF3a | 213 | Q213X | CaG | TaA | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.541 | 0.004425 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.1.610 | 0.003546 |
ORF3a | 213 | Q213L | cAg | cTg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 213 | Q213E | Cag | Gag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.31 | 0.003731 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.33 | 0.021277 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | B.35 | 0.007812 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | B.4.5 | 0.011905 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | C.13 | 0.025641 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | C.36 | 0.000911 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | C.37 | 0.000116 |
ORF3a | 213 | Q213X | Cag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF3a | 213 | Q213H | caG | caC | 1 | 1 | D.2 | 0.000075 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | D.3 | 0.005917 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | P.1 | 0.000016 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | P.2 | 0.000187 |
ORF3a | 213 | Q213K | Cag | Aag | 1 | 1 | P.3 | 0.001595 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 213 | Q213Q | caG | caA | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 213 | Q213H | caG | caT | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 213 | Q213R | cAg | cGg | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 213 | Q213del | CAG | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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