CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 213

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a213Q213KnonsynCagAag26622662126029-26031
ORF3a213Q213HnonsyncaGcaT171517140.99941726029-26031
ORF3a213Q213HnonsyncaGcaC171510.0005830926029-26031
ORF3a213Q213LnonsyncAgcTg388388126029-26031
ORF3a213Q213QsyncaGcaA285285126029-26031
ORF3a213Q213RnonsyncAgcGg1701670.98235326029-26031
ORF3a213Q213RnonsyncAGcGT17020.011764726029-26031
ORF3a213Q213RnonsyncAGcGA17010.0058823526029-26031
ORF3a213Q213XnonsynCagTag36350.97222226029-26031
ORF3a213Q213XnonsynCaGTaA3610.027777826029-26031
ORF3a213Q213EnonsynCagGag3131126029-26031
ORF3a213Q213deldelCAG---2121126029-26031
ORF3a213Q213YnonsynCaGTaT1111126029-26031
ORF3a213Q213WnonsynCAgTGg66126029-26031
ORF3a213Q213SnonsynCAgTCg33126029-26031
ORF3a213Q213del1delCaG-aC320.66666726029-26031
ORF3a213Q213del1delcaGca-310.33333326029-26031
ORF3a213Q213CnonsynCAGTGT22126029-26031
ORF3a213Q213MnonsynCAgATg11126029-26031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a213Q213KCagAag26622662All0.000509
ORF3a213Q213HcaGcaT17141715All0.000328
ORF3a213Q213HcaGcaC11715All0
ORF3a213Q213HcaGcaT10711071B.1.1.70.000959
ORF3a213Q213KCagAag649649B.1.1.70.000581
ORF3a213Q213LcAgcTg388388All0.000074
ORF3a213Q213HcaGcaT355355AY.1190.012534
ORF3a213Q213QcaGcaA285285All0.000055
ORF3a213Q213KCagAag201201A.2.30.952607
ORF3a213Q213RcAgcGg167170All0.000032
ORF3a213Q213RcAGcGT2170All0
ORF3a213Q213RcAGcGA1170All0
ORF3a213Q213KCagAag164164AY.40.000255
ORF3a213Q213QcaGcaA139139AY.250.000836
ORF3a213Q213LcAgcTg138138B.1.9.40.846626
ORF3a213Q213HcaGcaT108108AY.120.034134
ORF3a213Q213LcAgcTg107107B.10.00098
ORF3a213Q213KCagAag107107B.1.177.210.008182
ORF3a213Q213KCagAag9797B.1.617.20.000365
ORF3a213Q213KCagAag9090AY.430.000399
ORF3a213Q213KCagAag7878B.1.10.001415
ORF3a213Q213LcAgcTg7676B.1.1.70.000068
ORF3a213Q213KCagAag6464B.1.20.000564
ORF3a213Q213RcAgcGg6262AY.730.041251
ORF3a213Q213KCagAag5858B.10.000531
ORF3a213Q213KCagAag5858P.10.000914
ORF3a213Q213KCagAag5656C.370.0065
ORF3a213Q213KCagAag5353AY.1030.000329
ORF3a213Q213KCagAag5252AY.50.001074
ORF3a213Q213KCagAag4949AY.250.000295
ORF3a213Q213KCagAag4141AY.440.00025
ORF3a213Q213XCagTag3536All0.000007
ORF3a213Q213XCaGTaA136All0
ORF3a213Q213KCagAag3434B.1.1.4860.053628
ORF3a213Q213KCagAag3434B.1.1770.000448
ORF3a213Q213KCagAag3434B.1.6390.73913
ORF3a213Q213KCagAag3333AY.600.030957
ORF3a213Q213HcaGcaT3333B.1.177.100.028973
ORF3a213Q213ECagGag3131All0.000006
ORF3a213Q213QcaGcaA3131B.1.1.70.000028
ORF3a213Q213KCagAag3030AY.950.022831
ORF3a213Q213KCagAag2929AY.390.000717
ORF3a213Q213KCagAag2828B.1.1.280.008715
ORF3a213Q213ECagGag2626AY.40.00004
ORF3a213Q213LcAgcTg2525AY.40.000039
ORF3a213Q213KCagAag2323B.1.1.5190.000913
ORF3a213Q213KCagAag2323B.1.2580.001531
ORF3a213Q213KCagAag2222A.2.5.10.105769
ORF3a213Q213delCAG---2121All0.000004
ORF3a213Q213KCagAag2121B.1.617.10.002708
ORF3a213Q213HcaGcaT2121B.1.617.20.000079
ORF3a213Q213HcaGcaT2020AY.40.000031
ORF3a213Q213KCagAag2020B.1.1.700.006821
ORF3a213Q213QcaGcaA1919AY.1030.000118
ORF3a213Q213RcAgcGg1818AY.9.10.001507
ORF3a213Q213RcAgcGg1818B.1.1.70.000016
ORF3a213Q213RcAgcGg1818B.1.617.20.000068
ORF3a213Q213KCagAag1717AY.30.000169
ORF3a213Q213KCagAag1616AY.1020.000424
ORF3a213Q213KCagAag1616AY.1130.002278
ORF3a213Q213HcaGcaT1616B.1.5950.004175
ORF3a213Q213QcaGcaA1515AY.440.000091
ORF3a213Q213KCagAag1515AY.690.0028
ORF3a213Q213KCagAag1313AY.46.60.000939
ORF3a213Q213KCagAag1212AY.90.000811
ORF3a213Q213KCagAag1212B.1.1.10.00392
ORF3a213Q213YCaGTaT1111All0.000002
ORF3a213Q213KCagAag1111AY.4.20.000239
ORF3a213Q213KCagAag1111AY.470.000342
ORF3a213Q213KCagAag1111B.1.4290.000259
ORF3a213Q213LcAgcTg1010AY.1200.000372
ORF3a213Q213QcaGcaA1010AY.430.000044
ORF3a213Q213KCagAag99AE.80.004401
ORF3a213Q213KCagAag99AY.1200.000335
ORF3a213Q213KCagAag99AY.39.10.000357
ORF3a213Q213QcaGcaA99AY.40.000014
ORF3a213Q213HcaGcaT99AY.430.00004
ORF3a213Q213KCagAag99AY.750.000504
ORF3a213Q213KCagAag99B.1.1.1890.013616
ORF3a213Q213KCagAag99B.1.1.5250.04918
ORF3a213Q213KCagAag99B.1.4270.000454
ORF3a213Q213KCagAag99B.1.5260.000212
ORF3a213Q213KCagAag99B.1.6370.000658
ORF3a213Q213KCagAag88AY.200.000311
ORF3a213Q213HcaGcaT88B.10.000073
ORF3a213Q213KCagAag77AY.290.00011
ORF3a213Q213KCagAag77B.1.258.140.006863
ORF3a213Q213KCagAag77B.1.258.160.011457
ORF3a213Q213HcaGcaT77B.280.022951
ORF3a213Q213WCAgTGg66All0.000001
ORF3a213Q213HcaGcaT66AY.440.000037
ORF3a213Q213KCagAag66B.1.1.670.027397
ORF3a213Q213LcAgcTg66B.1.90.037037
ORF3a213Q213KCagAag66D.20.00045
ORF3a213Q213KCagAag66L.30.021277
ORF3a213Q213KCagAag55AY.1180.000313
ORF3a213Q213HcaGcaT55AY.1200.000186
ORF3a213Q213KCagAag55AY.260.000142
ORF3a213Q213KCagAag55AY.330.000334
ORF3a213Q213HcaGcaT55AY.390.000124
ORF3a213Q213XCagTag55AY.440.00003
ORF3a213Q213RcAgcGg55B.10.000046
ORF3a213Q213KCagAag55B.1.1.2140.000277
ORF3a213Q213XCagTag55B.1.1.70.000004
ORF3a213Q213KCagAag55B.1.3510.000149
ORF3a213Q213KCagAag55B.1.5250.000566
ORF3a213Q213KCagAag55B.1.5610.001985
ORF3a213Q213QcaGcaA55P.10.000079
ORF3a213Q213KCagAag55P.1.150.001162
ORF3a213Q213KCagAag55Q.30.000725
ORF3a213Q213KCagAag44A.10.001127
ORF3a213Q213KCagAag44AY.1070.001864
ORF3a213Q213RcAgcGg44AY.40.000006
ORF3a213Q213WCAgTGg44AY.40.000006
ORF3a213Q213KCagAag44AY.4.50.00043
ORF3a213Q213KCagAag44AY.460.000416
ORF3a213Q213KCagAag44AY.540.000381
ORF3a213Q213KCagAag44B.1.1.3170.001647
ORF3a213Q213KCagAag44B.1.1.3680.012346
ORF3a213Q213QcaGcaA44B.1.1.5190.000159
ORF3a213Q213KCagAag44B.1.2430.000278
ORF3a213Q213LcAgcTg44B.1.4250.011976
ORF3a213Q213delCAG---44B.1.5250.000453
ORF3a213Q213KCagAag44B.1.5820.001963
ORF3a213Q213QcaGcaA44B.1.5890.030303
ORF3a213Q213XCagTag44B.1.617.20.000015
ORF3a213Q213LcAgcTg44B.1.9.50.022727
ORF3a213Q213SCAgTCg33All0.000001
ORF3a213Q213del1CaG-aC23All0
ORF3a213Q213del1caGca-13All0
ORF3a213Q213KCagAag33AY.1000.000138
ORF3a213Q213QcaGcaA33AY.1020.00008
ORF3a213Q213KCagAag33AY.1110.000549
ORF3a213Q213KCagAag33AY.140.000264
ORF3a213Q213QcaGcaA33AY.30.00003
ORF3a213Q213RcAgcGg33AY.330.0002
ORF3a213Q213KCagAag33AY.360.000445
ORF3a213Q213RcAgcGg33AY.370.000948
ORF3a213Q213QcaGcaA33AY.390.000074
ORF3a213Q213KCagAag33AY.39.1.10.002174
ORF3a213Q213KCagAag33AY.410.000882
ORF3a213Q213RcAgcGg33AY.420.000121
ORF3a213Q213delCAG---33AY.430.000013
ORF3a213Q213QcaGcaA33AY.640.001786
ORF3a213Q213KCagAag33AY.9.10.000251
ORF3a213Q213QcaGcaA33AZ.30.004559
ORF3a213Q213LcAgcTg33B0.000383
ORF3a213Q213QcaGcaA33B.10.000027
ORF3a213Q213KCagAag33B.1.1.2840.000322
ORF3a213Q213KCagAag33B.1.1.390.001529
ORF3a213Q213RcAgcGg23B.1.20.000018
ORF3a213Q213RcAGcGT13B.1.20.000009
ORF3a213Q213KCagAag33B.1.258.170.000312
ORF3a213Q213KCagAag33B.1.4000.001287
ORF3a213Q213KCagAag33B.1.4990.003151
ORF3a213Q213QcaGcaA33B.1.5260.000071
ORF3a213Q213YCaGTaT33B.1.5260.000071
ORF3a213Q213KCagAag33B.1.5960.000261
ORF3a213Q213QcaGcaA33B.1.617.20.000011
ORF3a213Q213KCagAag33P.1.140.000143
ORF3a213Q213delCAG---220.111111
ORF3a213Q213CCAGTGT220.111111
ORF3a213Q213del1CaG-aC220.111111
ORF3a213Q213CCAGTGT22All0
ORF3a213Q213KCagAag22AY.1160.000574
ORF3a213Q213KCagAag22AY.1170.000169
ORF3a213Q213KCagAag22AY.1190.000071
ORF3a213Q213KCagAag22AY.16.10.00094
ORF3a213Q213HcaGcaT22AY.200.000078
ORF3a213Q213HcaGcaT22AY.260.000057
ORF3a213Q213LcAgcTg22AY.260.000057
ORF3a213Q213LcAgcTg22AY.3.10.000171
ORF3a213Q213XCagTag22AY.40.000003
ORF3a213Q213KCagAag22AY.420.00008
ORF3a213Q213XCagTag22AY.430.000009
ORF3a213Q213QcaGcaA22AY.60.000082
ORF3a213Q213KCagAag22AY.60.000082
ORF3a213Q213KCagAag22AY.680.000547
ORF3a213Q213YCaGTaT22AY.750.000112
ORF3a213Q213RcAgcGg22AY.9.20.000073
ORF3a213Q213KCagAag22AY.98.10.000097
ORF3a213Q213KCagAag22AZ.20.001642
ORF3a213Q213HcaGcaT22B.1.10.000036
ORF3a213Q213RcAgcGg22B.1.1.2220.000408
ORF3a213Q213HcaGcaT22B.1.1.3070.005063
ORF3a213Q213RcAgcGg22B.1.1.4160.00181
ORF3a213Q213YCaGTaT22B.1.1.70.000002
ORF3a213Q213KCagAag22B.1.177.750.002081
ORF3a213Q213KCagAag22B.1.177.770.001452
ORF3a213Q213KCagAag22B.1.177.820.000955
ORF3a213Q213LcAgcTg22B.1.20.000018
ORF3a213Q213XCagTag22B.1.20.000018
ORF3a213Q213HcaGcaT22B.1.20.000018
ORF3a213Q213ECagGag22B.1.20.000018
ORF3a213Q213KCagAag22B.1.2210.000142
ORF3a213Q213KCagAag22B.1.2340.000264
ORF3a213Q213KCagAag22B.1.2390.002442
ORF3a213Q213QcaGcaA22B.1.2580.000133
ORF3a213Q213LcAgcTg22B.1.3240.00321
ORF3a213Q213KCagAag22B.1.360.000292
ORF3a213Q213RcAgcGg22B.1.360.000292
ORF3a213Q213HcaGcaT22B.1.4270.000101
ORF3a213Q213RcAgcGg22B.1.4270.000101
ORF3a213Q213KCagAag22B.1.438.10.000215
ORF3a213Q213KCagAag22B.1.466.20.000782
ORF3a213Q213RcAGcGT12B.1.5960.000087
ORF3a213Q213RcAgcGg12B.1.5960.000087
ORF3a213Q213KCagAag22B.1.6210.000177
ORF3a213Q213KCagAag22B.1.930.001867
ORF3a213Q213KCagAag22B.40.004415
ORF3a213Q213KCagAag22C.300.003454
ORF3a213Q213HcaGcaT22C.370.000232
ORF3a213Q213KCagAag22C.37.10.005236
ORF3a213Q213HcaGcaT22C.80.008929
ORF3a213Q213HcaGcaT22P.10.000032
ORF3a213Q213QcaGcaA22P.1.170.000324
ORF3a213Q213KCagAag22Q.10.000253
ORF3a213Q213KCagAag22Q.80.00033
ORF3a213Q213HcaGcaT22R.10.00018
ORF3a213Q213KCagAag22R.10.00018
ORF3a213Q213KCagAag11A0.000387
ORF3a213Q213RcAgcGg11A.20.000662
ORF3a213Q213KCagAag11A.20.000662
ORF3a213Q213KCagAag11AD.20.000219
ORF3a213Q213MCAgATg11All0
ORF3a213Q213HcaGcaT11AY.1020.000027
ORF3a213Q213RcAgcGg11AY.1020.000027
ORF3a213Q213SCAgTCg11AY.1030.000006
ORF3a213Q213RcAgcGg11AY.1030.000006
ORF3a213Q213LcAgcTg11AY.1030.000006
ORF3a213Q213HcaGcaT11AY.1090.00074
ORF3a213Q213HcaGcaT11AY.1100.000113
ORF3a213Q213YCaGTaT11AY.1190.000035
ORF3a213Q213delCAG---11AY.1200.000037
ORF3a213Q213KCagAag11AY.120.20.001285
ORF3a213Q213KCagAag11AY.120.2.10.000498
ORF3a213Q213HcaGcaT11AY.1210.000135
ORF3a213Q213KCagAag11AY.1210.000135
ORF3a213Q213KCagAag11AY.130.000161
ORF3a213Q213ECagGag11AY.160.00038
ORF3a213Q213HcaGcaT11AY.20.000356
ORF3a213Q213KCagAag11AY.230.00007
ORF3a213Q213RcAgcGg11AY.230.00007
ORF3a213Q213RcAgcGg11AY.250.000006
ORF3a213Q213HcaGcaT11AY.250.000006
ORF3a213Q213QcaGcaA11AY.260.000028
ORF3a213Q213KCagAag11AY.270.000065
ORF3a213Q213QcaGcaA11AY.290.000016
ORF3a213Q213KCagAag11AY.29.10.000221
ORF3a213Q213XCagTag11AY.30.00001
ORF3a213Q213LcAgcTg11AY.30.00001
ORF3a213Q213RcAgcGg11AY.30.00001
ORF3a213Q213HcaGcaT11AY.30.00001
ORF3a213Q213QcaGcaA11AY.3.10.000085
ORF3a213Q213QcaGcaA11AY.300.000396
ORF3a213Q213RcAgcGg11AY.320.000532
ORF3a213Q213KCagAag11AY.320.000532
ORF3a213Q213KCagAag11AY.340.000097
ORF3a213Q213KCagAag11AY.350.000233
ORF3a213Q213HcaGcaT11AY.360.000148
ORF3a213Q213XCagTag11AY.390.000025
ORF3a213Q213XCagTag11AY.39.10.00004
ORF3a213Q213delCAG---11AY.40.000002
ORF3a213Q213WCAgTGg11AY.430.000004
ORF3a213Q213MCAgATg11AY.430.000004
ORF3a213Q213YCaGTaT11AY.440.000006
ORF3a213Q213SCAgTCg11AY.440.000006
ORF3a213Q213RcAgcGg11AY.440.000006
ORF3a213Q213KCagAag11AY.450.000122
ORF3a213Q213KCagAag11AY.46.10.001027
ORF3a213Q213KCagAag11AY.46.20.000635
ORF3a213Q213XCagTag11AY.50.000021
ORF3a213Q213RcAgcGg11AY.5.30.000337
ORF3a213Q213LcAgcTg11AY.540.000095
ORF3a213Q213HcaGcaT11AY.550.000917
ORF3a213Q213KCagAag11AY.590.00053
ORF3a213Q213HcaGcaT11AY.60.000041
ORF3a213Q213XCagTag11AY.600.000938
ORF3a213Q213LcAgcTg11AY.610.000105
ORF3a213Q213HcaGcaT11AY.610.000105
ORF3a213Q213QcaGcaA11AY.610.000105
ORF3a213Q213RcAGcGA11AY.670.000464
ORF3a213Q213delCAG---11AY.680.000274
ORF3a213Q213QcaGcaA11AY.70.000196
ORF3a213Q213KCagAag11AY.70.000196
ORF3a213Q213KCagAag11AY.740.000116
ORF3a213Q213HcaGcaT11AY.750.000056
ORF3a213Q213KCagAag11AY.800.001129
ORF3a213Q213QcaGcaA11AY.840.000437
ORF3a213Q213KCagAag11AY.880.000884
ORF3a213Q213RcAgcGg11AY.90.000068
ORF3a213Q213HcaGcaT11AY.9.10.000084
ORF3a213Q213KCagAag11AY.920.000287
ORF3a213Q213RcAgcGg11AY.930.000273
ORF3a213Q213KCagAag11AY.970.001701
ORF3a213Q213KCagAag11AY.980.000079
ORF3a213Q213RcAgcGg11AY.980.000079
ORF3a213Q213QcaGcaA11AY.980.000079
ORF3a213Q213LcAgcTg11AY.990.001049
ORF3a213Q213KCagAag11B0.000128
ORF3a213Q213ECagGag11B.10.000009
ORF3a213Q213XCagTag11B.10.000009
ORF3a213Q213delCAG---11B.10.000009
ORF3a213Q213XCagTag11B.1.1.2140.000055
ORF3a213Q213KCagAag11B.1.1.2690.001353
ORF3a213Q213YCaGTaT11B.1.1.2770.000759
ORF3a213Q213KCagAag11B.1.1.30.008696
ORF3a213Q213KCagAag11B.1.1.3260.001761
ORF3a213Q213KCagAag11B.1.1.330.000421
ORF3a213Q213KCagAag11B.1.1.3330.001076
ORF3a213Q213HcaGcaT11B.1.1.3470.018182
ORF3a213Q213KCagAag11B.1.1.3490.010309
ORF3a213Q213KCagAag11B.1.1.370.000193
ORF3a213Q213HcaGcaT11B.1.1.3750.011905
ORF3a213Q213KCagAag11B.1.1.3970.002252
ORF3a213Q213QcaGcaA11B.1.1.4320.001266
ORF3a213Q213KCagAag11B.1.1.4530.008475
ORF3a213Q213KCagAag11B.1.1.4640.001473
ORF3a213Q213KCagAag11B.1.1.500.000679
ORF3a213Q213RcAgcGg11B.1.1.5190.00004
ORF3a213Q213YCaGTaT11B.1.1.5190.00004
ORF3a213Q213KCagAag11B.1.1.5260.003546
ORF3a213Q213delCAG---11B.1.1.70.000001
ORF3a213Q213SCAgTCg11B.1.1.70.000001
ORF3a213Q213KCagAag11B.1.1.830.00271
ORF3a213Q213KCagAag11B.1.1260.001276
ORF3a213Q213HcaGcaT11B.1.1340.005464
ORF3a213Q213KCagAag11B.1.1460.004237
ORF3a213Q213XCagTag11B.1.1600.000031
ORF3a213Q213KCagAag11B.1.1600.000031
ORF3a213Q213HcaGcaT11B.1.1600.000031
ORF3a213Q213KCagAag11B.1.160.180.007299
ORF3a213Q213HcaGcaT11B.1.1770.000013
ORF3a213Q213delCAG---11B.1.1770.000013
ORF3a213Q213XCagTag11B.1.1770.000013
ORF3a213Q213RcAgcGg11B.1.1770.000013
ORF3a213Q213KCagAag11B.1.177.110.001698
ORF3a213Q213KCagAag11B.1.177.150.000631
ORF3a213Q213KCagAag11B.1.177.330.001645
ORF3a213Q213KCagAag11B.1.177.350.000691
ORF3a213Q213KCagAag11B.1.177.40.000211
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