CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 210 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a210D210YnonsynGacTac176717510.99094526020-26022

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a210D210YGacTac17511767All0.000335
ORF3a210D210YGacTac606621B.1.1.70.000543
ORF3a210D210YGacTac134134AY.30.001333
ORF3a210D210YGacTac126126AY.40.000196
ORF3a210D210YGacTac106106B.1.177.810.020068
ORF3a210D210YGacTac8888B.1.6210.00779
ORF3a210D210YGacTac6565B.1.177.530.155502
ORF3a210D210YGacTac5555AY.250.000331
ORF3a210D210YGacTac5151AY.4.2.10.007598
ORF3a210D210YGacTac4747B.1.617.20.000177
ORF3a210D210YGacTac3737B.1.4930.948718
ORF3a210D210YGacTac3434AY.440.000207
ORF3a210D210YGacTac2525B.1.20.00022
ORF3a210D210YGacTac2424B.1.1770.000316
ORF3a210D210YGacTac1919B.10.000174
ORF3a210D210YGacTac1818N.90.107143
ORF3a210D210YGacTac1617AY.430.000071
ORF3a210D210YGacTac1616AY.1020.000424
ORF3a210D210YGacTac1515AY.1000.00069
ORF3a210D210YGacTac1515AY.230.001046
ORF3a210D210YGacTac1515Q.80.002474
ORF3a210D210YGacTac1414AY.1210.001894
ORF3a210D210YGacTac1414C.360.01275
ORF3a210D210YGacTac1010B.1.1.5190.000397
ORF3a210D210YGacTac1010B.1.177.750.010406
ORF3a210D210YGacTac99AY.50.000186
ORF3a210D210YGacTac99AY.9.10.000754
ORF3a210D210YGacTac88AY.1030.00005
ORF3a210D210YGacTac88AY.450.000973
ORF3a210D210YGacTac66B.1.2580.000399
ORF3a210D210YGacTac66P.1.70.001916
ORF3a210D210YGacTac55AY.290.000079
ORF3a210D210YGacTac55B.1.1.370.000964
ORF3a210D210YGacTac44AY.1070.001864
ORF3a210D210YGacTac44AY.4.50.00043
ORF3a210D210YGacTac44AY.740.000463
ORF3a210D210YGacTac44B.1.2430.000278
ORF3a210D210YGacTac44P.20.000747
ORF3a210D210YGacTac33AY.390.000074
ORF3a210D210YGacTac33AY.4.20.000065
ORF3a210D210YGacTac33AY.420.000121
ORF3a210D210YGacTac33AY.610.000314
ORF3a210D210YGacTac33AY.75.10.000541
ORF3a210D210YGacTac33B.1.1.390.001529
ORF3a210D210YGacTac33B.1.1.5060.111111
ORF3a210D210YGacTac33B.1.1460.012712
ORF3a210D210YGacTac33B.1.4270.000151
ORF3a210D210YGacTac33C.370.000348
ORF3a210D210YGacTac33P.10.000047
ORF3a210D210YGacTac33Z.10.008671
ORF3a210D210YGacTac22AY.1170.000169
ORF3a210D210YGacTac22AY.120.20.002571
ORF3a210D210YGacTac22AY.200.000078
ORF3a210D210YGacTac22AY.240.000862
ORF3a210D210YGacTac22AY.260.000057
ORF3a210D210YGacTac22AY.9.20.000073
ORF3a210D210YGacTac22B.1.1.280.000622
ORF3a210D210YGacTac22B.1.1.2940.002532
ORF3a210D210YGacTac22B.1.360.000292
ORF3a210D210YGacTac22B.1.36.290.001035
ORF3a210D210YGacTac22B.1.4290.000047
ORF3a210D210YGacTac22B.1.617.10.000258
ORF3a210D210YGacTac11A.190.009434
ORF3a210D210YGacTac11A.270.001656
ORF3a210D210YGacTac11AD.20.000219
ORF3a210D210YGacTac11AY.1060.000335
ORF3a210D210YGacTac11AY.1100.000113
ORF3a210D210YGacTac11AY.1200.000037
ORF3a210D210YGacTac11AY.160.00038
ORF3a210D210YGacTac11AY.34.10.00051
ORF3a210D210YGacTac11AY.460.000104
ORF3a210D210YGacTac11AY.46.20.000635
ORF3a210D210YGacTac11AY.46.40.000165
ORF3a210D210YGacTac11AY.490.003195
ORF3a210D210YGacTac11AY.5.30.000337
ORF3a210D210YGacTac11AY.520.000814
ORF3a210D210YGacTac11AY.680.000274
ORF3a210D210YGacTac11AY.730.000665
ORF3a210D210YGacTac11AY.750.000056
ORF3a210D210YGacTac11AY.770.001127
ORF3a210D210YGacTac11AY.840.000437
ORF3a210D210YGacTac11AY.860.00083
ORF3a210D210YGacTac11AY.98.10.000048
ORF3a210D210YGacTac11B0.000128
ORF3a210D210YGacTac11B.1.1.10.000327
ORF3a210D210YGacTac11B.1.1.1610.003534
ORF3a210D210YGacTac11B.1.1.2140.000055
ORF3a210D210YGacTac11B.1.1.2160.00089
ORF3a210D210YGacTac11B.1.1.2210.010101
ORF3a210D210YGacTac11B.1.1.2840.000107
ORF3a210D210YGacTac11B.1.1.3060.000438
ORF3a210D210YGacTac11B.1.1.3980.003226
ORF3a210D210YGacTac11B.1.1.40.002976
ORF3a210D210YGacTac11B.1.1.430.014925
ORF3a210D210YGacTac11B.1.1.5260.003546
ORF3a210D210YGacTac11B.1.1.630.000386
ORF3a210D210YGacTac11B.1.1470.000756
ORF3a210D210YGacTac11B.1.177.500.004695
ORF3a210D210YGacTac11B.1.177.540.000606
ORF3a210D210YGacTac11B.1.2400.000216
ORF3a210D210YGacTac11B.1.351.30.000876
ORF3a210D210YGacTac11B.1.3670.000792
ORF3a210D210YGacTac11B.1.4110.003704
ORF3a210D210YGacTac11B.1.438.10.000107
ORF3a210D210YGacTac11B.1.466.20.000391
ORF3a210D210YGacTac11B.1.5300.007143
ORF3a210D210YGacTac11B.1.5330.009615
ORF3a210D210YGacTac11B.1.564.10.001577
ORF3a210D210YGacTac11B.1.5960.000087
ORF3a210D210YGacTac11B.1.6050.005952
ORF3a210D210YGacTac11C.36.30.000567
ORF3a210D210YGacTac11C.40.01
ORF3a210D210YGacTac11D.20.000075
ORF3a210D210YGacTac11P.1.10.000318
ORF3a210D210YGacTac11P.1.150.000232
ORF3a210D210YGacTac11Q.40.000455
ORF3a210D210YGacTac11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.