CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 210 | D210Y | nonsyn | Gac | Tac | 1767 | 1751 | 0.990945 | 26020-26022 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 210 | D210Y | Gac | Tac | 1751 | 1767 | All | 0.000335 |
ORF3a | 210 | D210Y | Gac | Tac | 606 | 621 | B.1.1.7 | 0.000543 |
ORF3a | 210 | D210Y | Gac | Tac | 134 | 134 | AY.3 | 0.001333 |
ORF3a | 210 | D210Y | Gac | Tac | 126 | 126 | AY.4 | 0.000196 |
ORF3a | 210 | D210Y | Gac | Tac | 106 | 106 | B.1.177.81 | 0.020068 |
ORF3a | 210 | D210Y | Gac | Tac | 88 | 88 | B.1.621 | 0.00779 |
ORF3a | 210 | D210Y | Gac | Tac | 65 | 65 | B.1.177.53 | 0.155502 |
ORF3a | 210 | D210Y | Gac | Tac | 55 | 55 | AY.25 | 0.000331 |
ORF3a | 210 | D210Y | Gac | Tac | 51 | 51 | AY.4.2.1 | 0.007598 |
ORF3a | 210 | D210Y | Gac | Tac | 47 | 47 | B.1.617.2 | 0.000177 |
ORF3a | 210 | D210Y | Gac | Tac | 37 | 37 | B.1.493 | 0.948718 |
ORF3a | 210 | D210Y | Gac | Tac | 34 | 34 | AY.44 | 0.000207 |
ORF3a | 210 | D210Y | Gac | Tac | 25 | 25 | B.1.2 | 0.00022 |
ORF3a | 210 | D210Y | Gac | Tac | 24 | 24 | B.1.177 | 0.000316 |
ORF3a | 210 | D210Y | Gac | Tac | 19 | 19 | B.1 | 0.000174 |
ORF3a | 210 | D210Y | Gac | Tac | 18 | 18 | N.9 | 0.107143 |
ORF3a | 210 | D210Y | Gac | Tac | 16 | 17 | AY.43 | 0.000071 |
ORF3a | 210 | D210Y | Gac | Tac | 16 | 16 | AY.102 | 0.000424 |
ORF3a | 210 | D210Y | Gac | Tac | 15 | 15 | AY.100 | 0.00069 |
ORF3a | 210 | D210Y | Gac | Tac | 15 | 15 | AY.23 | 0.001046 |
ORF3a | 210 | D210Y | Gac | Tac | 15 | 15 | Q.8 | 0.002474 |
ORF3a | 210 | D210Y | Gac | Tac | 14 | 14 | AY.121 | 0.001894 |
ORF3a | 210 | D210Y | Gac | Tac | 14 | 14 | C.36 | 0.01275 |
ORF3a | 210 | D210Y | Gac | Tac | 10 | 10 | B.1.1.519 | 0.000397 |
ORF3a | 210 | D210Y | Gac | Tac | 10 | 10 | B.1.177.75 | 0.010406 |
ORF3a | 210 | D210Y | Gac | Tac | 9 | 9 | AY.5 | 0.000186 |
ORF3a | 210 | D210Y | Gac | Tac | 9 | 9 | AY.9.1 | 0.000754 |
ORF3a | 210 | D210Y | Gac | Tac | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 210 | D210Y | Gac | Tac | 8 | 8 | AY.45 | 0.000973 |
ORF3a | 210 | D210Y | Gac | Tac | 6 | 6 | B.1.258 | 0.000399 |
ORF3a | 210 | D210Y | Gac | Tac | 6 | 6 | P.1.7 | 0.001916 |
ORF3a | 210 | D210Y | Gac | Tac | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 210 | D210Y | Gac | Tac | 5 | 5 | B.1.1.37 | 0.000964 |
ORF3a | 210 | D210Y | Gac | Tac | 4 | 4 | AY.107 | 0.001864 |
ORF3a | 210 | D210Y | Gac | Tac | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 210 | D210Y | Gac | Tac | 4 | 4 | AY.74 | 0.000463 |
ORF3a | 210 | D210Y | Gac | Tac | 4 | 4 | B.1.243 | 0.000278 |
ORF3a | 210 | D210Y | Gac | Tac | 4 | 4 | P.2 | 0.000747 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | B.1.1.506 | 0.111111 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | B.1.146 | 0.012712 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | C.37 | 0.000348 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | P.1 | 0.000047 |
ORF3a | 210 | D210Y | Gac | Tac | 3 | 3 | Z.1 | 0.008671 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.120.2 | 0.002571 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 210 | D210Y | Gac | Tac | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | A.19 | 0.009434 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | A.27 | 0.001656 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.221 | 0.010101 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.43 | 0.014925 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.411 | 0.003704 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.530 | 0.007143 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | B.1.605 | 0.005952 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | C.4 | 0.01 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 210 | D210Y | Gac | Tac | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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