CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 209 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a209S209AnonsynTcaGca206206126017-26019

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a209S209ATcaGca206206All0.000039
ORF3a209S209ATcaGca140140B.1.3800.927152
ORF3a209S209ATcaGca2929B.1.20.000255
ORF3a209S209ATcaGca99AY.99.20.000829
ORF3a209S209ATcaGca55B.1.1.70.000004
ORF3a209S209ATcaGca33AY.250.000018
ORF3a209S209ATcaGca33AY.440.000018
ORF3a209S209ATcaGca33B.1.1770.00004
ORF3a209S209ATcaGca22AY.1020.000053
ORF3a209S209ATcaGca22B.1.617.20.000008
ORF3a209S209ATcaGca11AY.1200.000037
ORF3a209S209ATcaGca11AY.160.00038
ORF3a209S209ATcaGca11AY.40.000002
ORF3a209S209ATcaGca11AY.690.000187
ORF3a209S209ATcaGca11AY.700.000209
ORF3a209S209ATcaGca11AY.750.000056
ORF3a209S209ATcaGca11B.10.000009
ORF3a209S209ATcaGca11B.1.10.000018
ORF3a209S209ATcaGca11B.1.4270.00005
ORF3a209S209ATcaGca11B.1.617.10.000129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.