CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 209

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a209S209SsyntcAtcG6514360.66973926017-26019
ORF3a209S209SsyntcAtcT6511580.24270426017-26019
ORF3a209S209SsyntcAtcC651570.087557626017-26019
ORF3a209S209LnonsyntCatTa2922800.95890426017-26019
ORF3a209S209LnonsynTCaCTa292120.041095926017-26019
ORF3a209S209AnonsynTcaGca206206126017-26019
ORF3a209S209PnonsynTcaCca67660.98507526017-26019
ORF3a209S209PnonsynTcACcG6710.014925426017-26019
ORF3a209S209deldelTCA---2727126017-26019
ORF3a209S209TnonsynTcaAca19180.94736826017-26019
ORF3a209S209TnonsynTcAAcG1910.052631626017-26019
ORF3a209S209XnonsyntCatAa760.85714326017-26019
ORF3a209S209XnonsyntCatGa710.14285726017-26019
ORF3a209S209RnonsynTCaCGa520.426017-26019
ORF3a209S209RnonsynTCACGG510.226017-26019
ORF3a209S209RnonsynTCAAGG510.226017-26019
ORF3a209S209RnonsynTCaAGa510.226017-26019
ORF3a209S209del1deltcAtc-310.33333326017-26019
ORF3a209S209del1delTca-ca310.33333326017-26019
ORF3a209S209del1deltCat-a310.33333326017-26019
ORF3a209S209CnonsyntCAtGC11126017-26019
ORF3a209S209VnonsynTCAGTT11126017-26019

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a209S209StcAtcG436651All0.000083
ORF3a209S209StcAtcT158651All0.00003
ORF3a209S209StcAtcC57651All0.000011
ORF3a209S209LtCatTa280292All0.000054
ORF3a209S209LTCaCTa12292All0.000002
ORF3a209S209ATcaGca206206All0.000039
ORF3a209S209StcAtcG138150B.1.1.70.000124
ORF3a209S209StcAtcT12150B.1.1.70.000011
ORF3a209S209StcAtcG146146AY.1090.107988
ORF3a209S209ATcaGca140140B.1.3800.927152
ORF3a209S209PTcaCca6667All0.000013
ORF3a209S209PTcACcG167All0
ORF3a209S209LtCatTa6767B.1.1.70.00006
ORF3a209S209StcAtcT2642AY.40.00004
ORF3a209S209StcAtcG842AY.40.000012
ORF3a209S209StcAtcC842AY.40.000012
ORF3a209S209LtCatTa3737P.10.000583
ORF3a209S209StcAtcT2435B.1.617.20.00009
ORF3a209S209StcAtcG635B.1.617.20.000023
ORF3a209S209StcAtcC535B.1.617.20.000019
ORF3a209S209ATcaGca2929B.1.20.000255
ORF3a209S209delTCA---2727All0.000005
ORF3a209S209LtCatTa2525B.1.20.00022
ORF3a209S209LtCatTa2123B.1.617.20.000079
ORF3a209S209LTCaCTa223B.1.617.20.000008
ORF3a209S209StcAtcG1321AY.250.000078
ORF3a209S209StcAtcC521AY.250.00003
ORF3a209S209StcAtcT321AY.250.000018
ORF3a209S209LtCatTa2020B.1.5950.005219
ORF3a209S209TTcaAca1819All0.000003
ORF3a209S209TTcAAcG119All0
ORF3a209S209LtCatTa1616AY.7.10.001803
ORF3a209S209StcAtcG1616B.1.6200.015137
ORF3a209S209StcAtcC1515B.1.1.4011
ORF3a209S209StcAtcG914AY.430.00004
ORF3a209S209StcAtcT414AY.430.000018
ORF3a209S209StcAtcC114AY.430.000004
ORF3a209S209LtCatTa1313C.370.001509
ORF3a209S209StcAtcT1012AY.440.000061
ORF3a209S209StcAtcG212AY.440.000012
ORF3a209S209PTcaCca1212B.1.351.30.010517
ORF3a209S209StcAtcG1111AY.99.20.001014
ORF3a209S209StcAtcG1011B.1.3510.000297
ORF3a209S209StcAtcT111B.1.3510.00003
ORF3a209S209LtCatTa1010AY.30.000099
ORF3a209S209StcAtcT510B.1.20.000044
ORF3a209S209StcAtcG410B.1.20.000035
ORF3a209S209StcAtcC110B.1.20.000009
ORF3a209S209ATcaGca99AY.99.20.000829
ORF3a209S209PTcaCca99B.1.1.250.005117
ORF3a209S209PTcaCca99B.1.20.000079
ORF3a209S209LTCaCTa78AY.980.000553
ORF3a209S209LtCatTa18AY.980.000079
ORF3a209S209LtCatTa88B.1.1.2140.000444
ORF3a209S209StcAtcG88B.1.1.3650.044693
ORF3a209S209XtCatAa67All0.000001
ORF3a209S209XtCatGa17All0
ORF3a209S209StcAtcT77B.1.110.30.005029
ORF3a209S209StcAtcG77B.1.5580.031963
ORF3a209S209StcAtcG66AY.1030.000037
ORF3a209S209StcAtcT66AY.200.000233
ORF3a209S209LtCatTa66AY.430.000027
ORF3a209S209StcAtcG66AY.9.20.00022
ORF3a209S209PTcaCca66B.10.000055
ORF3a209S209RTCaCGa25All0
ORF3a209S209RTCACGG15All0
ORF3a209S209RTCAAGG15All0
ORF3a209S209RTCaAGa15All0
ORF3a209S209StcAtcG35AY.1020.00008
ORF3a209S209StcAtcT15AY.1020.000027
ORF3a209S209StcAtcC15AY.1020.000027
ORF3a209S209LtCatTa55AY.40.000008
ORF3a209S209RTCaCGa25AY.430.000009
ORF3a209S209RTCaAGa15AY.430.000004
ORF3a209S209RTCACGG15AY.430.000004
ORF3a209S209RTCAAGG15AY.430.000004
ORF3a209S209StcAtcC45AY.50.000083
ORF3a209S209StcAtcT15AY.50.000021
ORF3a209S209StcAtcT55AY.600.00469
ORF3a209S209ATcaGca55B.1.1.70.000004
ORF3a209S209PTcaCca55B.1.3510.000149
ORF3a209S209StcAtcT44A0.001548
ORF3a209S209LtCatTa44AY.260.000113
ORF3a209S209StcAtcG24AY.390.000049
ORF3a209S209StcAtcT24AY.390.000049
ORF3a209S209delTCA---44AY.430.000018
ORF3a209S209StcAtcG44AY.46.60.000289
ORF3a209S209StcAtcT24B.10.000018
ORF3a209S209StcAtcG14B.10.000009
ORF3a209S209StcAtcC14B.10.000009
ORF3a209S209StcAtcT44B.1.1.280.001245
ORF3a209S209StcAtcT44B.1.177.570.001124
ORF3a209S209delTCA---44B.1.5250.000453
ORF3a209S209del1Tca-ca13All0
ORF3a209S209del1tCat-a13All0
ORF3a209S209del1tcAtc-13All0
ORF3a209S209ATcaGca33AY.250.000018
ORF3a209S209LtCatTa33AY.250.000018
ORF3a209S209StcAtcG23AY.30.00002
ORF3a209S209StcAtcT13AY.30.00001
ORF3a209S209LtCatTa33AY.39.10.000119
ORF3a209S209PTcaCca23AY.430.000009
ORF3a209S209PTcACcG13AY.430.000004
ORF3a209S209ATcaGca33AY.440.000018
ORF3a209S209StcAtcG33AY.460.000312
ORF3a209S209LtCatTa33B.1.10.000054
ORF3a209S209StcAtcG23B.1.10.000036
ORF3a209S209StcAtcT13B.1.10.000018
ORF3a209S209StcAtcT33B.1.1.2160.002671
ORF3a209S209StcAtcT33B.1.1.2770.002276
ORF3a209S209delTCA---33B.1.1.70.000003
ORF3a209S209LtCatTa33B.1.1.700.001023
ORF3a209S209ATcaGca33B.1.1770.00004
ORF3a209S209TTcaAca33B.1.177.70.000495
ORF3a209S209TTcaAca33B.1.20.000026
ORF3a209S209StcAtcG33B.1.2430.000209
ORF3a209S209XtCatAa33B.1.3980.008929
ORF3a209S209StcAtcC13B.1.4290.000024
ORF3a209S209StcAtcT13B.1.4290.000024
ORF3a209S209StcAtcG13B.1.4290.000024
ORF3a209S209StcAtcC33B.1.5960.000261
ORF3a209S209StcAtcC33B.1.6370.000219
ORF3a209S209StcAtcG33B.60.00273
ORF3a209S209StcAtcT33C.140.012987
ORF3a209S209StcAtcG33C.370.000348
ORF3a209S209StcAtcC23P.1.160.000748
ORF3a209S209StcAtcT13P.1.160.000374
ORF3a209S209delTCA---220.111111
ORF3a209S209LtCatTa220.111111
ORF3a209S209ATcaGca22AY.1020.000053
ORF3a209S209LTCaCTa22AY.1020.000053
ORF3a209S209StcAtcT22AY.1190.000071
ORF3a209S209TTcaAca22AY.200.000078
ORF3a209S209StcAtcG12AY.330.000067
ORF3a209S209StcAtcT12AY.330.000067
ORF3a209S209StcAtcT22AY.4.20.000043
ORF3a209S209TTcAAcG12AY.430.000004
ORF3a209S209TTcaAca12AY.430.000004
ORF3a209S209LtCatTa22AY.46.60.000144
ORF3a209S209LtCatTa22AY.740.000231
ORF3a209S209StcAtcG22AY.850.000854
ORF3a209S209StcAtcT22AZ.20.001642
ORF3a209S209XtCatAa22B.10.000018
ORF3a209S209LtCatTa22B.1.2340.000264
ORF3a209S209PTcaCca22B.1.2430.000139
ORF3a209S209PTcaCca22B.1.3690.00057
ORF3a209S209PTcaCca22B.1.617.20.000008
ORF3a209S209ATcaGca22B.1.617.20.000008
ORF3a209S209StcAtcT22B.1.6210.000177
ORF3a209S209PTcaCca11A0.000387
ORF3a209S209TTcaAca11A0.000387
ORF3a209S209LtCatTa11A.270.001656
ORF3a209S209StcAtcG11AD.20.000219
ORF3a209S209StcAtcT11AE.80.000489
ORF3a209S209CtCAtGC11All0
ORF3a209S209VTCAGTT11All0
ORF3a209S209PTcaCca11AY.1020.000027
ORF3a209S209LtCatTa11AY.1170.000085
ORF3a209S209delTCA---11AY.1200.000037
ORF3a209S209ATcaGca11AY.1200.000037
ORF3a209S209LtCatTa11AY.1200.000037
ORF3a209S209StcAtcG11AY.130.000161
ORF3a209S209ATcaGca11AY.160.00038
ORF3a209S209LtCatTa11AY.200.000039
ORF3a209S209PTcaCca11AY.230.00007
ORF3a209S209StcAtcT11AY.240.000431
ORF3a209S209StcAtcC11AY.270.000065
ORF3a209S209delTCA---11AY.30.00001
ORF3a209S209StcAtcT11AY.320.000532
ORF3a209S209StcAtcG11AY.360.000148
ORF3a209S209LtCatTa11AY.380.000499
ORF3a209S209LTCaCTa11AY.390.000025
ORF3a209S209ATcaGca11AY.40.000002
ORF3a209S209delTCA---11AY.40.000002
ORF3a209S209TTcaAca11AY.40.000002
ORF3a209S209LtCatTa11AY.4.20.000022
ORF3a209S209StcAtcG11AY.4.50.000107
ORF3a209S209LtCatTa11AY.420.00004
ORF3a209S209LtCatTa11AY.46.20.000635
ORF3a209S209StcAtcC11AY.46.40.000165
ORF3a209S209LtCatTa11AY.470.000031
ORF3a209S209StcAtcG11AY.470.000031
ORF3a209S209StcAtcG11AY.540.000095
ORF3a209S209StcAtcT11AY.590.00053
ORF3a209S209StcAtcT11AY.60.000041
ORF3a209S209del1tCat-a11AY.650.000533
ORF3a209S209StcAtcC11AY.670.000464
ORF3a209S209CtCAtGC11AY.670.000464
ORF3a209S209XtCatGa11AY.670.000464
ORF3a209S209delTCA---11AY.680.000274
ORF3a209S209ATcaGca11AY.690.000187
ORF3a209S209ATcaGca11AY.700.000209
ORF3a209S209LtCatTa11AY.700.000209
ORF3a209S209StcAtcT11AY.740.000116
ORF3a209S209ATcaGca11AY.750.000056
ORF3a209S209StcAtcC11AY.750.000056
ORF3a209S209LtCatTa11AY.790.001211
ORF3a209S209LtCatTa11AY.830.001724
ORF3a209S209delTCA---11AY.90.000068
ORF3a209S209StcAtcT11AY.940.000443
ORF3a209S209LtCatTa11AY.970.001701
ORF3a209S209StcAtcT11AY.98.10.000048
ORF3a209S209StcAtcC11AZ.10.000867
ORF3a209S209StcAtcC11B0.000128
ORF3a209S209delTCA---11B0.000128
ORF3a209S209PTcaCca11B0.000128
ORF3a209S209ATcaGca11B.10.000009
ORF3a209S209delTCA---11B.10.000009
ORF3a209S209LtCatTa11B.10.000009
ORF3a209S209PTcaCca11B.1.10.000018
ORF3a209S209VTCAGTT11B.1.10.000018
ORF3a209S209ATcaGca11B.1.10.000018
ORF3a209S209TTcaAca11B.1.10.000018
ORF3a209S209LtCatTa11B.1.1.1010.01
ORF3a209S209TTcaAca11B.1.1.1940.00495
ORF3a209S209PTcaCca11B.1.1.2690.001353
ORF3a209S209LtCatTa11B.1.1.3060.000438
ORF3a209S209StcAtcG11B.1.1.3060.000438
ORF3a209S209LtCatTa11B.1.1.330.000421
ORF3a209S209StcAtcG11B.1.1.330.000421
ORF3a209S209TTcaAca11B.1.1.3680.003086
ORF3a209S209LtCatTa11B.1.1.370.000193
ORF3a209S209StcAtcT11B.1.1.480.002874
ORF3a209S209TTcaAca11B.1.1.5230.001563
ORF3a209S209PTcaCca11B.1.1.70.000001
ORF3a209S209del1tcAtc-11B.1.1.70.000001
ORF3a209S209XtCatAa11B.1.1770.000013
ORF3a209S209LtCatTa11B.1.1770.000013
ORF3a209S209delTCA---11B.1.1770.000013
ORF3a209S209PTcaCca11B.1.1770.000013
ORF3a209S209StcAtcG11B.1.177.70.000165
ORF3a209S209delTCA---11B.1.177.730.000566
ORF3a209S209delTCA---11B.1.20.000009
ORF3a209S209delTCA---11B.1.2210.000071
ORF3a209S209PTcaCca11B.1.221.30.000833
ORF3a209S209PTcaCca11B.1.2320.000537
ORF3a209S209PTcaCca11B.1.2340.000132
ORF3a209S209TTcaAca11B.1.2430.00007
ORF3a209S209StcAtcT11B.1.2580.000067
ORF3a209S209PTcaCca11B.1.3130.006579
ORF3a209S209LtCatTa11B.1.3510.00003
ORF3a209S209StcAtcT11B.1.351.20.000303
ORF3a209S209PTcaCca11B.1.351.20.000303
ORF3a209S209LtCatTa11B.1.351.30.000876
ORF3a209S209StcAtcT11B.1.36.220.001208
ORF3a209S209StcAtcC11B.1.3620.001541
ORF3a209S209ATcaGca11B.1.4270.00005
ORF3a209S209LtCatTa11B.1.4290.000024
ORF3a209S209TTcaAca11B.1.4290.000024
ORF3a209S209PTcaCca11B.1.4290.000024
ORF3a209S209StcAtcT11B.1.438.10.000107
ORF3a209S209StcAtcG11B.1.5260.000024
ORF3a209S209PTcaCca11B.1.5610.000397
ORF3a209S209delTCA---11B.1.5770.000687
ORF3a209S209LtCatTa11B.1.5960.000087
ORF3a209S209ATcaGca11B.1.617.10.000129
ORF3a209S209StcAtcG11B.1.617.10.000129
ORF3a209S209del1Tca-ca11B.1.617.20.000004
ORF3a209S209delTCA---11B.1.617.20.000004
ORF3a209S209TTcaAca11B.1.617.20.000004
ORF3a209S209PTcaCca11B.1.6200.000946
ORF3a209S209StcAtcG11C.320.023256
ORF3a209S209StcAtcG11P.1.120.000484
ORF3a209S209LtCatTa11P.1.120.000484
ORF3a209S209LtCatTa11P.1.140.000048
ORF3a209S209StcAtcG11P.1.140.000048
ORF3a209S209StcAtcT11P.1.150.000232
ORF3a209S209LtCatTa11P.1.20.001156
ORF3a209S209StcAtcT11P.20.000187
ORF3a209S209LtCatTa11P.20.000187
ORF3a209S209StcAtcG11P.70.004367
ORF3a209S209PTcaCca11Q.10.000126
ORF3a209S209StcAtcG11Q.30.000145
ORF3a209S209delTCA---11R.10.00009