CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 209 | S209S | syn | tcA | tcG | 651 | 436 | 0.669739 | 26017-26019 | |
ORF3a | 209 | S209S | syn | tcA | tcT | 651 | 158 | 0.242704 | 26017-26019 | |
ORF3a | 209 | S209S | syn | tcA | tcC | 651 | 57 | 0.0875576 | 26017-26019 | |
ORF3a | 209 | S209L | nonsyn | tCa | tTa | 292 | 280 | 0.958904 | 26017-26019 | |
ORF3a | 209 | S209L | nonsyn | TCa | CTa | 292 | 12 | 0.0410959 | 26017-26019 | |
ORF3a | 209 | S209A | nonsyn | Tca | Gca | 206 | 206 | 1 | 26017-26019 | |
ORF3a | 209 | S209P | nonsyn | Tca | Cca | 67 | 66 | 0.985075 | 26017-26019 | |
ORF3a | 209 | S209P | nonsyn | TcA | CcG | 67 | 1 | 0.0149254 | 26017-26019 | |
ORF3a | 209 | S209del | del | TCA | --- | 27 | 27 | 1 | 26017-26019 | |
ORF3a | 209 | S209T | nonsyn | Tca | Aca | 19 | 18 | 0.947368 | 26017-26019 | |
ORF3a | 209 | S209T | nonsyn | TcA | AcG | 19 | 1 | 0.0526316 | 26017-26019 | |
ORF3a | 209 | S209X | nonsyn | tCa | tAa | 7 | 6 | 0.857143 | 26017-26019 | |
ORF3a | 209 | S209X | nonsyn | tCa | tGa | 7 | 1 | 0.142857 | 26017-26019 | |
ORF3a | 209 | S209R | nonsyn | TCa | CGa | 5 | 2 | 0.4 | 26017-26019 | |
ORF3a | 209 | S209R | nonsyn | TCA | CGG | 5 | 1 | 0.2 | 26017-26019 | |
ORF3a | 209 | S209R | nonsyn | TCA | AGG | 5 | 1 | 0.2 | 26017-26019 | |
ORF3a | 209 | S209R | nonsyn | TCa | AGa | 5 | 1 | 0.2 | 26017-26019 | |
ORF3a | 209 | S209del1 | del | tcA | tc- | 3 | 1 | 0.333333 | 26017-26019 | |
ORF3a | 209 | S209del1 | del | Tca | -ca | 3 | 1 | 0.333333 | 26017-26019 | |
ORF3a | 209 | S209del1 | del | tCa | t-a | 3 | 1 | 0.333333 | 26017-26019 | |
ORF3a | 209 | S209C | nonsyn | tCA | tGC | 1 | 1 | 1 | 26017-26019 | |
ORF3a | 209 | S209V | nonsyn | TCA | GTT | 1 | 1 | 1 | 26017-26019 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 209 | S209S | tcA | tcG | 436 | 651 | All | 0.000083 |
ORF3a | 209 | S209S | tcA | tcT | 158 | 651 | All | 0.00003 |
ORF3a | 209 | S209S | tcA | tcC | 57 | 651 | All | 0.000011 |
ORF3a | 209 | S209L | tCa | tTa | 280 | 292 | All | 0.000054 |
ORF3a | 209 | S209L | TCa | CTa | 12 | 292 | All | 0.000002 |
ORF3a | 209 | S209A | Tca | Gca | 206 | 206 | All | 0.000039 |
ORF3a | 209 | S209S | tcA | tcG | 138 | 150 | B.1.1.7 | 0.000124 |
ORF3a | 209 | S209S | tcA | tcT | 12 | 150 | B.1.1.7 | 0.000011 |
ORF3a | 209 | S209S | tcA | tcG | 146 | 146 | AY.109 | 0.107988 |
ORF3a | 209 | S209A | Tca | Gca | 140 | 140 | B.1.380 | 0.927152 |
ORF3a | 209 | S209P | Tca | Cca | 66 | 67 | All | 0.000013 |
ORF3a | 209 | S209P | TcA | CcG | 1 | 67 | All | 0 |
ORF3a | 209 | S209L | tCa | tTa | 67 | 67 | B.1.1.7 | 0.00006 |
ORF3a | 209 | S209S | tcA | tcT | 26 | 42 | AY.4 | 0.00004 |
ORF3a | 209 | S209S | tcA | tcG | 8 | 42 | AY.4 | 0.000012 |
ORF3a | 209 | S209S | tcA | tcC | 8 | 42 | AY.4 | 0.000012 |
ORF3a | 209 | S209L | tCa | tTa | 37 | 37 | P.1 | 0.000583 |
ORF3a | 209 | S209S | tcA | tcT | 24 | 35 | B.1.617.2 | 0.00009 |
ORF3a | 209 | S209S | tcA | tcG | 6 | 35 | B.1.617.2 | 0.000023 |
ORF3a | 209 | S209S | tcA | tcC | 5 | 35 | B.1.617.2 | 0.000019 |
ORF3a | 209 | S209A | Tca | Gca | 29 | 29 | B.1.2 | 0.000255 |
ORF3a | 209 | S209del | TCA | --- | 27 | 27 | All | 0.000005 |
ORF3a | 209 | S209L | tCa | tTa | 25 | 25 | B.1.2 | 0.00022 |
ORF3a | 209 | S209L | tCa | tTa | 21 | 23 | B.1.617.2 | 0.000079 |
ORF3a | 209 | S209L | TCa | CTa | 2 | 23 | B.1.617.2 | 0.000008 |
ORF3a | 209 | S209S | tcA | tcG | 13 | 21 | AY.25 | 0.000078 |
ORF3a | 209 | S209S | tcA | tcC | 5 | 21 | AY.25 | 0.00003 |
ORF3a | 209 | S209S | tcA | tcT | 3 | 21 | AY.25 | 0.000018 |
ORF3a | 209 | S209L | tCa | tTa | 20 | 20 | B.1.595 | 0.005219 |
ORF3a | 209 | S209T | Tca | Aca | 18 | 19 | All | 0.000003 |
ORF3a | 209 | S209T | TcA | AcG | 1 | 19 | All | 0 |
ORF3a | 209 | S209L | tCa | tTa | 16 | 16 | AY.7.1 | 0.001803 |
ORF3a | 209 | S209S | tcA | tcG | 16 | 16 | B.1.620 | 0.015137 |
ORF3a | 209 | S209S | tcA | tcC | 15 | 15 | B.1.1.401 | 1 |
ORF3a | 209 | S209S | tcA | tcG | 9 | 14 | AY.43 | 0.00004 |
ORF3a | 209 | S209S | tcA | tcT | 4 | 14 | AY.43 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 14 | AY.43 | 0.000004 |
ORF3a | 209 | S209L | tCa | tTa | 13 | 13 | C.37 | 0.001509 |
ORF3a | 209 | S209S | tcA | tcT | 10 | 12 | AY.44 | 0.000061 |
ORF3a | 209 | S209S | tcA | tcG | 2 | 12 | AY.44 | 0.000012 |
ORF3a | 209 | S209P | Tca | Cca | 12 | 12 | B.1.351.3 | 0.010517 |
ORF3a | 209 | S209S | tcA | tcG | 11 | 11 | AY.99.2 | 0.001014 |
ORF3a | 209 | S209S | tcA | tcG | 10 | 11 | B.1.351 | 0.000297 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 11 | B.1.351 | 0.00003 |
ORF3a | 209 | S209L | tCa | tTa | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 209 | S209S | tcA | tcT | 5 | 10 | B.1.2 | 0.000044 |
ORF3a | 209 | S209S | tcA | tcG | 4 | 10 | B.1.2 | 0.000035 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 10 | B.1.2 | 0.000009 |
ORF3a | 209 | S209A | Tca | Gca | 9 | 9 | AY.99.2 | 0.000829 |
ORF3a | 209 | S209P | Tca | Cca | 9 | 9 | B.1.1.25 | 0.005117 |
ORF3a | 209 | S209P | Tca | Cca | 9 | 9 | B.1.2 | 0.000079 |
ORF3a | 209 | S209L | TCa | CTa | 7 | 8 | AY.98 | 0.000553 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 8 | AY.98 | 0.000079 |
ORF3a | 209 | S209L | tCa | tTa | 8 | 8 | B.1.1.214 | 0.000444 |
ORF3a | 209 | S209S | tcA | tcG | 8 | 8 | B.1.1.365 | 0.044693 |
ORF3a | 209 | S209X | tCa | tAa | 6 | 7 | All | 0.000001 |
ORF3a | 209 | S209X | tCa | tGa | 1 | 7 | All | 0 |
ORF3a | 209 | S209S | tcA | tcT | 7 | 7 | B.1.110.3 | 0.005029 |
ORF3a | 209 | S209S | tcA | tcG | 7 | 7 | B.1.558 | 0.031963 |
ORF3a | 209 | S209S | tcA | tcG | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 209 | S209S | tcA | tcT | 6 | 6 | AY.20 | 0.000233 |
ORF3a | 209 | S209L | tCa | tTa | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 209 | S209S | tcA | tcG | 6 | 6 | AY.9.2 | 0.00022 |
ORF3a | 209 | S209P | Tca | Cca | 6 | 6 | B.1 | 0.000055 |
ORF3a | 209 | S209R | TCa | CGa | 2 | 5 | All | 0 |
ORF3a | 209 | S209R | TCA | CGG | 1 | 5 | All | 0 |
ORF3a | 209 | S209R | TCA | AGG | 1 | 5 | All | 0 |
ORF3a | 209 | S209R | TCa | AGa | 1 | 5 | All | 0 |
ORF3a | 209 | S209S | tcA | tcG | 3 | 5 | AY.102 | 0.00008 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 5 | AY.102 | 0.000027 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 5 | AY.102 | 0.000027 |
ORF3a | 209 | S209L | tCa | tTa | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 209 | S209R | TCa | CGa | 2 | 5 | AY.43 | 0.000009 |
ORF3a | 209 | S209R | TCa | AGa | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 209 | S209R | TCA | CGG | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 209 | S209R | TCA | AGG | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 209 | S209S | tcA | tcC | 4 | 5 | AY.5 | 0.000083 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 5 | AY.5 | 0.000021 |
ORF3a | 209 | S209S | tcA | tcT | 5 | 5 | AY.60 | 0.00469 |
ORF3a | 209 | S209A | Tca | Gca | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 209 | S209P | Tca | Cca | 5 | 5 | B.1.351 | 0.000149 |
ORF3a | 209 | S209S | tcA | tcT | 4 | 4 | A | 0.001548 |
ORF3a | 209 | S209L | tCa | tTa | 4 | 4 | AY.26 | 0.000113 |
ORF3a | 209 | S209S | tcA | tcG | 2 | 4 | AY.39 | 0.000049 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 4 | AY.39 | 0.000049 |
ORF3a | 209 | S209del | TCA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcG | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 4 | B.1 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 4 | B.1 | 0.000009 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 4 | B.1 | 0.000009 |
ORF3a | 209 | S209S | tcA | tcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 209 | S209S | tcA | tcT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF3a | 209 | S209del | TCA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 209 | S209del1 | Tca | -ca | 1 | 3 | All | 0 |
ORF3a | 209 | S209del1 | tCa | t-a | 1 | 3 | All | 0 |
ORF3a | 209 | S209del1 | tcA | tc- | 1 | 3 | All | 0 |
ORF3a | 209 | S209A | Tca | Gca | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 209 | S209L | tCa | tTa | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcG | 2 | 3 | AY.3 | 0.00002 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 3 | AY.3 | 0.00001 |
ORF3a | 209 | S209L | tCa | tTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 209 | S209P | Tca | Cca | 2 | 3 | AY.43 | 0.000009 |
ORF3a | 209 | S209P | TcA | CcG | 1 | 3 | AY.43 | 0.000004 |
ORF3a | 209 | S209A | Tca | Gca | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcG | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 209 | S209L | tCa | tTa | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 209 | S209S | tcA | tcG | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 209 | S209S | tcA | tcT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF3a | 209 | S209S | tcA | tcT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF3a | 209 | S209del | TCA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 209 | S209L | tCa | tTa | 3 | 3 | B.1.1.70 | 0.001023 |
ORF3a | 209 | S209A | Tca | Gca | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 209 | S209T | Tca | Aca | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 209 | S209T | Tca | Aca | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 209 | S209S | tcA | tcG | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 209 | S209X | tCa | tAa | 3 | 3 | B.1.398 | 0.008929 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 3 | B.1.429 | 0.000024 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 3 | B.1.429 | 0.000024 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 3 | B.1.429 | 0.000024 |
ORF3a | 209 | S209S | tcA | tcC | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 209 | S209S | tcA | tcC | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 209 | S209S | tcA | tcG | 3 | 3 | B.6 | 0.00273 |
ORF3a | 209 | S209S | tcA | tcT | 3 | 3 | C.14 | 0.012987 |
ORF3a | 209 | S209S | tcA | tcG | 3 | 3 | C.37 | 0.000348 |
ORF3a | 209 | S209S | tcA | tcC | 2 | 3 | P.1.16 | 0.000748 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 3 | P.1.16 | 0.000374 |
ORF3a | 209 | S209del | TCA | --- | 2 | 2 | 0.111111 | |
ORF3a | 209 | S209L | tCa | tTa | 2 | 2 | 0.111111 | |
ORF3a | 209 | S209A | Tca | Gca | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 209 | S209L | TCa | CTa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 209 | S209T | Tca | Aca | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 2 | AY.33 | 0.000067 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 2 | AY.33 | 0.000067 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 209 | S209T | TcA | AcG | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 209 | S209L | tCa | tTa | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 209 | S209L | tCa | tTa | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 209 | S209S | tcA | tcG | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 2 | AZ.2 | 0.001642 |
ORF3a | 209 | S209X | tCa | tAa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 209 | S209L | tCa | tTa | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 209 | S209P | Tca | Cca | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 209 | S209P | Tca | Cca | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 209 | S209P | Tca | Cca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 209 | S209A | Tca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 209 | S209S | tcA | tcT | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | A | 0.000387 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | A | 0.000387 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | A.27 | 0.001656 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 209 | S209C | tCA | tGC | 1 | 1 | All | 0 |
ORF3a | 209 | S209V | TCA | GTT | 1 | 1 | All | 0 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 209 | S209L | TCa | CTa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 209 | S209del1 | tCa | t-a | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 209 | S209C | tCA | tGC | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 209 | S209X | tCa | tGa | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.83 | 0.001724 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | AY.97 | 0.001701 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | B | 0.000128 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B | 0.000128 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 209 | S209V | TCA | GTT | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 209 | S209del1 | tcA | tc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 209 | S209X | tCa | tAa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.313 | 0.006579 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 209 | S209S | tcA | tcC | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 209 | S209A | Tca | Gca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 209 | S209del1 | Tca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 209 | S209T | Tca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | C.32 | 0.023256 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 209 | S209S | tcA | tcT | 1 | 1 | P.2 | 0.000187 |
ORF3a | 209 | S209L | tCa | tTa | 1 | 1 | P.2 | 0.000187 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | P.7 | 0.004367 |
ORF3a | 209 | S209P | Tca | Cca | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 209 | S209S | tcA | tcG | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 209 | S209del | TCA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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