CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 202 | V202V | syn | gtA | gtG | 1432 | 1336 | 0.932961 | 25996-25998 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 202 | V202V | gtA | gtG | 1336 | 1432 | All | 0.000256 |
ORF3a | 202 | V202V | gtA | gtG | 279 | 279 | B.1.617.2 | 0.001051 |
ORF3a | 202 | V202V | gtA | gtG | 119 | 135 | B.1.1.7 | 0.000107 |
ORF3a | 202 | V202V | gtA | gtG | 132 | 132 | AY.4 | 0.000205 |
ORF3a | 202 | V202V | gtA | gtG | 83 | 83 | AY.102 | 0.002201 |
ORF3a | 202 | V202V | gtA | gtG | 78 | 78 | B.1.526 | 0.001833 |
ORF3a | 202 | V202V | gtA | gtG | 74 | 75 | AY.44 | 0.00045 |
ORF3a | 202 | V202V | gtA | gtG | 48 | 48 | AY.25 | 0.000289 |
ORF3a | 202 | V202V | gtA | gtG | 25 | 48 | AY.43 | 0.000111 |
ORF3a | 202 | V202V | gtA | gtG | 44 | 44 | B.1.1.417 | 0.118919 |
ORF3a | 202 | V202V | gtA | gtG | 38 | 38 | AY.118 | 0.002381 |
ORF3a | 202 | V202V | gtA | gtG | 37 | 37 | AY.26 | 0.001047 |
ORF3a | 202 | V202V | gtA | gtG | 37 | 37 | B.1.527 | 0.137037 |
ORF3a | 202 | V202V | gtA | gtG | 33 | 34 | AY.103 | 0.000205 |
ORF3a | 202 | V202V | gtA | gtG | 25 | 27 | AY.3 | 0.000249 |
ORF3a | 202 | V202V | gtA | gtG | 25 | 25 | B.1.177.44 | 0.012974 |
ORF3a | 202 | V202V | gtA | gtG | 25 | 25 | B.1.429 | 0.000588 |
ORF3a | 202 | V202V | gtA | gtG | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 202 | V202V | gtA | gtG | 15 | 16 | B.1 | 0.000137 |
ORF3a | 202 | V202V | gtA | gtG | 12 | 12 | AY.29 | 0.000189 |
ORF3a | 202 | V202V | gtA | gtG | 7 | 10 | B.1.1 | 0.000127 |
ORF3a | 202 | V202V | gtA | gtG | 9 | 10 | B.1.177 | 0.000119 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 8 | AY.119 | 0.000106 |
ORF3a | 202 | V202V | gtA | gtG | 8 | 8 | AY.4.2 | 0.000174 |
ORF3a | 202 | V202V | gtA | gtG | 8 | 8 | AY.45 | 0.000973 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 8 | B.1.525 | 0.000226 |
ORF3a | 202 | V202V | gtA | gtG | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 202 | V202V | gtA | gtG | 7 | 7 | AY.61 | 0.000733 |
ORF3a | 202 | V202V | gtA | gtG | 6 | 6 | AY.55 | 0.005505 |
ORF3a | 202 | V202V | gtA | gtG | 6 | 6 | B.1.427 | 0.000303 |
ORF3a | 202 | V202V | gtA | gtG | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 202 | V202V | gtA | gtG | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 5 | AY.20 | 0.000155 |
ORF3a | 202 | V202V | gtA | gtG | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 202 | V202V | gtA | gtG | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 202 | V202V | gtA | gtG | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | A.27 | 0.006623 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | AY.39.1 | 0.000158 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | AY.79 | 0.004843 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | AY.9.2 | 0.000147 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | B.1.240 | 0.000862 |
ORF3a | 202 | V202V | gtA | gtG | 4 | 4 | B.1.396 | 0.002823 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | AY.54 | 0.000286 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | B.1.1.326 | 0.005282 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | B.1.1.486 | 0.004732 |
ORF3a | 202 | V202V | gtA | gtG | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | AY.52 | 0.001629 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | B.1.389 | 0.002004 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | D.2 | 0.00015 |
ORF3a | 202 | V202V | gtA | gtG | 2 | 2 | P.1 | 0.000032 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.1.467 | 0.019231 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | B.40 | 0.000364 |
ORF3a | 202 | V202V | gtA | gtG | 1 | 1 | P.1.17 | 0.000162 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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