CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 202 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a202V202LnonsynGtaTta36925366720.99314825996-25998

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a202V202LGtaTta3667236925All0.007014
ORF3a202V202LGtaTta1359913601B.1.2210.965975
ORF3a202V202LGtaTta73677368AY.1210.996888
ORF3a202V202LGtaTta50295047B.1.617.20.018936
ORF3a202V202LGtaTta18731885B.1.1.70.001677
ORF3a202V202LGtaTta11921192B.1.221.30.993333
ORF3a202V202LGtaTta532543AY.40.000828
ORF3a202V202LGtaTta341341B.1.221.10.991279
ORF3a202V202LGtaTta331331B.1.1.2070.391253
ORF3a202V202LGtaTta295296AY.420.011868
ORF3a202V202LGtaTta291293AY.1030.001807
ORF3a202V202LGtaTta280281AY.9.20.010284
ORF3a202V202LGtaTta264265B.1.20.002325
ORF3a202V202LGtaTta256256AY.750.014342
ORF3a202V202LGtaTta241246P.10.003797
ORF3a202V202LGtaTta245245B.1.221.20.983936
ORF3a202V202LGtaTta239239B.1.221.40.995833
ORF3a202V202LGtaTta235235B.1.1.2140.013032
ORF3a202V202LGtaTta158164B.10.001447
ORF3a202V202LGtaTta161162AY.430.000713
ORF3a202V202LGtaTta157157AY.390.00388
ORF3a202V202LGtaTta157157B.1.1770.002067
ORF3a202V202LGtaTta156156B.1.160.121
ORF3a202V202LGtaTta154154AY.1200.005726
ORF3a202V202LGtaTta13147AY.290.000205
ORF3a202V202LGtaTta134137AY.440.000816
ORF3a202V202LGtaTta129129AY.1050.082958
ORF3a202V202LGtaTta9697B.1.3510.002854
ORF3a202V202LGtaTta9292AY.98.10.004456
ORF3a202V202LGtaTta8686AY.250.000517
ORF3a202V202LGtaTta8586AY.330.005676
ORF3a202V202LGtaTta7272B.1.10.001306
ORF3a202V202LGtaTta6868P.1.140.00325
ORF3a202V202LGtaTta6464B.1.1.1410.128773
ORF3a202V202LGtaTta6363AY.30.000627
ORF3a202V202LGtaTta5959B.1.1600.00184
ORF3a202V202LGtaTta5858AY.70.011368
ORF3a202V202LGtaTta5757AY.980.004503
ORF3a202V202LGtaTta5656AY.46.20.035578
ORF3a202V202LGtaTta5354AY.99.20.004884
ORF3a202V202LGtaTta5151AY.1170.00431
ORF3a202V202LGtaTta5151B.1.1.2840.005477
ORF3a202V202LGtaTta4849B.1.177.40.010131
ORF3a202V202LGtaTta4647AY.690.008587
ORF3a202V202LGtaTta4444AY.340.004266
ORF3a202V202LGtaTta4040AY.9.10.003349
ORF3a202V202LGtaTta3939B.1.1.3060.017098
ORF3a202V202LGtaTta3737AY.1060.012391
ORF3a202V202LGtaTta3737AY.230.002581
ORF3a202V202LGtaTta3535B.1.1.830.094851
ORF3a202V202LGtaTta3233AY.1190.00113
ORF3a202V202LGtaTta3333B.1.1.3470.6
ORF3a202V202LGtaTta3132AY.450.003772
ORF3a202V202LGtaTta3131B.1.4270.001565
ORF3a202V202LGtaTta2930AY.50.000599
ORF3a202V202LGtaTta2829AY.1180.001754
ORF3a202V202LGtaTta2929AY.200.001127
ORF3a202V202LGtaTta2929B.1.1.1890.043873
ORF3a202V202LGtaTta2828B.1.5250.003168
ORF3a202V202LGtaTta2727B.1.1.1010.27
ORF3a202V202LGtaTta2123AY.1000.000966
ORF3a202V202LGtaTta2323B.1.2580.001531
ORF3a202V202LGtaTta2122AY.1020.000557
ORF3a202V202LGtaTta2222AY.840.009624
ORF3a202V202LGtaTta2121B.1.1.4320.026582
ORF3a202V202LGtaTta1921B.1.177.210.001453
ORF3a202V202LGtaTta620AY.60.000247
ORF3a202V202LGtaTta2020AZ.20.01642
ORF3a202V202LGtaTta2020B.1.5090.017316
ORF3a202V202LGtaTta1919AY.1100.002141
ORF3a202V202LGtaTta1919AY.210.036053
ORF3a202V202LGtaTta1919AY.260.000538
ORF3a202V202LGtaTta1818AY.120.10.005778
ORF3a202V202LGtaTta1717AY.46.60.001228
ORF3a202V202LGtaTta1717B.1.177.850.092391
ORF3a202V202LGtaTta1316D.20.000976
ORF3a202V202LGtaTta1515AY.920.004309
ORF3a202V202LGtaTta1515B.1.1.330.006313
ORF3a202V202LGtaTta1414AY.1110.002564
ORF3a202V202LGtaTta1414B.1.2100.029851
ORF3a202V202LGtaTta1414B.1.5950.003653
ORF3a202V202LGtaTta1314C.370.001509
ORF3a202V202LGtaTta1313AY.320.006922
ORF3a202V202LGtaTta1313AY.5.30.004386
ORF3a202V202LGtaTta1313AY.600.012195
ORF3a202V202LGtaTta1313B.1.1.5190.000516
ORF3a202V202LGtaTta1313B.1.5170.005551
ORF3a202V202LGtaTta1313P.20.002426
ORF3a202V202LGtaTta1112AY.4.20.000239
ORF3a202V202LGtaTta1212AY.460.001249
ORF3a202V202LGtaTta1212AY.770.013529
ORF3a202V202LGtaTta1212B.1.1.2220.002448
ORF3a202V202LGtaTta1212B.1.3690.003423
ORF3a202V202LGtaTta1111AY.1080.012128
ORF3a202V202LGtaTta1111AY.4.50.001182
ORF3a202V202LGtaTta1111AY.900.007529
ORF3a202V202LGtaTta1111B.1.1.3170.004529
ORF3a202V202LGtaTta1111B.1.3990.021277
ORF3a202V202LGtaTta1111Q.70.012222
ORF3a202V202LGtaTta1111W.10.095652
ORF3a202V202LGtaTta1010AY.130.00161
ORF3a202V202LGtaTta910B.1.4290.000212
ORF3a202V202LGtaTta910B.1.617.10.001161
ORF3a202V202LGtaTta79AY.29.10.001544
ORF3a202V202LGtaTta99AY.46.40.001481
ORF3a202V202LGtaTta99AY.740.001041
ORF3a202V202LGtaTta89B0.001022
ORF3a202V202LGtaTta99B.1.2400.00194
ORF3a202V202LGtaTta99B.1.2430.000626
ORF3a202V202LGtaTta99C.350.006966
ORF3a202V202LGtaTta88AY.116.10.002491
ORF3a202V202LGtaTta88AY.470.000249
ORF3a202V202LGtaTta88AY.7.10.000902
ORF3a202V202LGtaTta88AY.90.000541
ORF3a202V202LGtaTta88AY.930.002185
ORF3a202V202LGtaTta68AY.990.006296
ORF3a202V202LGtaTta88B.1.1.4340.002788
ORF3a202V202LGtaTta88B.1.36.10.009122
ORF3a202V202LGtaTta88B.1.5260.000188
ORF3a202V202LGtaTta77AY.120.002212
ORF3a202V202LGtaTta77AY.410.002058
ORF3a202V202LGtaTta77AY.820.009498
ORF3a202V202LGtaTta77B.1.160.320.030043
ORF3a202V202LGtaTta77B.1.177.430.01034
ORF3a202V202LGtaTta77B.1.177.70.001154
ORF3a202V202LGtaTta77C.36.30.003971
ORF3a202V202LGtaTta77Q.40.003183
ORF3a202V202LGtaTta77Q.80.001154
ORF3a202V202LGtaTta66AY.1130.000854
ORF3a202V202LGtaTta66AY.780.009245
ORF3a202V202LGtaTta66AY.910.004383
ORF3a202V202LGtaTta66B.1.1.1530.006572
ORF3a202V202LGtaTta66B.1.1.3970.013514
ORF3a202V202LGtaTta66B.1.258.170.000624
ORF3a202V202LGtaTta66B.1.360.000875
ORF3a202V202LGtaTta66B.1.36.290.003104
ORF3a202V202LGtaTta56B.1.5960.000436
ORF3a202V202LGtaTta55AY.270.000324
ORF3a202V202LGtaTta55AY.46.10.005133
ORF3a202V202LGtaTta55AY.550.004587
ORF3a202V202LGtaTta55AY.670.002321
ORF3a202V202LGtaTta55AY.880.004421
ORF3a202V202LGtaTta55B.1.5750.001517
ORF3a202V202LGtaTta44AY.1040.007937
ORF3a202V202LGtaTta44AY.110.005355
ORF3a202V202LGtaTta44AY.3.10.000341
ORF3a202V202LGtaTta44AY.510.003636
ORF3a202V202LGtaTta34AY.610.000314
ORF3a202V202LGtaTta44AY.620.001743
ORF3a202V202LGtaTta44AY.75.10.000721
ORF3a202V202LGtaTta44AY.860.00332
ORF3a202V202LGtaTta44B.1.1.1920.009238
ORF3a202V202LGtaTta44B.1.1.280.001245
ORF3a202V202LGtaTta44B.1.160.280.011696
ORF3a202V202LGtaTta44B.1.2340.000528
ORF3a202V202LGtaTta44B.1.3460.005242
ORF3a202V202LGtaTta44B.1.6190.003484
ORF3a202V202LGtaTta34R.10.00027
ORF3a202V202LGtaTta33A.23.10.002113
ORF3a202V202LGtaTta33AY.1160.00086
ORF3a202V202LGtaTta33AY.140.000264
ORF3a202V202LGtaTta33AY.170.02459
ORF3a202V202LGtaTta33AY.39.10.000119
ORF3a202V202LGtaTta33AY.400.002893
ORF3a202V202LGtaTta33AY.540.000286
ORF3a202V202LGtaTta33AY.680.000821
ORF3a202V202LGtaTta33AY.710.001425
ORF3a202V202LGtaTta33AY.800.003386
ORF3a202V202LGtaTta33AY.870.002498
ORF3a202V202LGtaTta33AY.950.002283
ORF3a202V202LGtaTta33B.1.1.1620.088235
ORF3a202V202LGtaTta33B.1.177.20.013636
ORF3a202V202LGtaTta33B.1.177.230.009709
ORF3a202V202LGtaTta33B.1.177.600.000655
ORF3a202V202LGtaTta33B.1.177.730.001699
ORF3a202V202LGtaTta33B.1.177.810.000568
ORF3a202V202LGtaTta33B.1.351.30.002629
ORF3a202V202LGtaTta33B.1.4590.012245
ORF3a202V202LGtaTta23B.1.466.20.000782
ORF3a202V202LGtaTta33B.1.6230.001609
ORF3a202V202LGtaTta33C.160.003181
ORF3a202V202LGtaTta33C.360.002732
ORF3a202V202LGtaTta33P.1.170.000485
ORF3a202V202LGtaTta22AY.1090.001479
ORF3a202V202LGtaTta22AY.1140.000462
ORF3a202V202LGtaTta22AY.16.10.00094
ORF3a202V202LGtaTta22AY.240.000862
ORF3a202V202LGtaTta22AY.280.003781
ORF3a202V202LGtaTta22AY.350.000466
ORF3a202V202LGtaTta22AY.360.000296
ORF3a202V202LGtaTta22AY.39.1.10.001449
ORF3a202V202LGtaTta22AY.4.30.001684
ORF3a202V202LGtaTta22AY.5.40.000553
ORF3a202V202LGtaTta22AY.520.001629
ORF3a202V202LGtaTta12AY.530.000288
ORF3a202V202LGtaTta22AY.640.00119
ORF3a202V202LGtaTta22AY.760.009662
ORF3a202V202LGtaTta22AY.830.003448
ORF3a202V202LGtaTta22B.1.1.100.00223
ORF3a202V202LGtaTta22B.1.1.2770.001517
ORF3a202V202LGtaTta22B.1.1.2800.006173
ORF3a202V202LGtaTta22B.1.1.3280.033898
ORF3a202V202LGtaTta22B.1.1.3480.001592
ORF3a202V202LGtaTta22B.1.1.390.001019
ORF3a202V202LGtaTta22B.1.1.440.004819
ORF3a202V202LGtaTta22B.1.1.510.003436
ORF3a202V202LGtaTta22B.1.177.160.001329
ORF3a202V202LGtaTta22B.1.177.690.002967
ORF3a202V202LGtaTta22B.1.177.820.000955
ORF3a202V202LGtaTta22B.1.177.860.000367
ORF3a202V202LGtaTta22B.1.1900.02
ORF3a202V202LGtaTta22B.1.4040.002604
ORF3a202V202LGtaTta22B.1.4330.00639
ORF3a202V202LGtaTta22B.1.5650.001621
ORF3a202V202LGtaTta22B.1.6090.000959
ORF3a202V202LGtaTta22B.1.6200.001892
ORF3a202V202LGtaTta22B.1.6280.000705
ORF3a202V202LGtaTta22P.1.100.000539
ORF3a202V202LGtaTta22P.1.120.000968
ORF3a202V202LGtaTta22P.1.160.000748
ORF3a202V202LGtaTta22P.1.70.000639
ORF3a202V202LGtaTta22Q.10.000253
ORF3a202V202LGtaTta11A0.000387
ORF3a202V202LGtaTta11A.10.000282
ORF3a202V202LGtaTta11A.160.016129
ORF3a202V202LGtaTta11A.250.018182
ORF3a202V202LGtaTta11AE.80.000489
ORF3a202V202LGtaTta11AF.10.037037
ORF3a202V202LGtaTta11AG.10.066667
ORF3a202V202LGtaTta11AL.10.012987
ORF3a202V202LGtaTta11AV.10.005051
ORF3a202V202LGtaTta11AY.10.000396
ORF3a202V202LGtaTta11AY.160.00038
ORF3a202V202LGtaTta11AY.190.00114
ORF3a202V202LGtaTta11AY.34.10.00051
ORF3a202V202LGtaTta11AY.380.000499
ORF3a202V202LGtaTta11AY.500.000799
ORF3a202V202LGtaTta11AY.570.000656
ORF3a202V202LGtaTta11AY.580.000907
ORF3a202V202LGtaTta11AY.590.00053
ORF3a202V202LGtaTta11AY.660.00107
ORF3a202V202LGtaTta11AY.7.20.000559
ORF3a202V202LGtaTta11AY.700.000209
ORF3a202V202LGtaTta11AY.730.000665
ORF3a202V202LGtaTta11AY.960.002075
ORF3a202V202LGtaTta11AY.99.10.001553
ORF3a202V202LGtaTta11B.1.1.1390.022727
ORF3a202V202LGtaTta11B.1.1.160.055556
ORF3a202V202LGtaTta11B.1.1.1980.001468
ORF3a202V202LGtaTta11B.1.1.2000.007463
ORF3a202V202LGtaTta11B.1.1.2280.003049
ORF3a202V202LGtaTta11B.1.1.2320.001815
ORF3a202V202LGtaTta11B.1.1.2550.00303
ORF3a202V202LGtaTta11B.1.1.2820.011628
ORF3a202V202LGtaTta11B.1.1.3260.001761
ORF3a202V202LGtaTta11B.1.1.3350.012987
ORF3a202V202LGtaTta11B.1.1.3510.002793
ORF3a202V202LGtaTta11B.1.1.370.000193
ORF3a202V202LGtaTta11B.1.1.3750.011905
ORF3a202V202LGtaTta11B.1.1.3890.006061
ORF3a202V202LGtaTta11B.1.1.4260.035714
ORF3a202V202LGtaTta11B.1.1.4640.001473
ORF3a202V202LGtaTta11B.1.1.5230.001563
ORF3a202V202LGtaTta11B.1.1.5260.003546
ORF3a202V202LGtaTta11B.1.110.30.000718
ORF3a202V202LGtaTta11B.1.1110.001175
ORF3a202V202LGtaTta11B.1.1460.004237
ORF3a202V202LGtaTta11B.1.1570.002985
ORF3a202V202LGtaTta11B.1.160.140.002119
ORF3a202V202LGtaTta11B.1.160.160.000929
ORF3a202V202LGtaTta11B.1.1700.00431
ORF3a202V202LGtaTta11B.1.177.150.000631
ORF3a202V202LGtaTta11B.1.177.320.00135
ORF3a202V202LGtaTta11B.1.177.440.000519
ORF3a202V202LGtaTta11B.1.177.530.002392
ORF3a202V202LGtaTta11B.1.177.570.000281
ORF3a202V202LGtaTta11B.1.177.580.001332
ORF3a202V202LGtaTta11B.1.177.620.001192
ORF3a202V202LGtaTta11B.1.177.770.000726
ORF3a202V202LGtaTta11B.1.177.80.000752
ORF3a202V202LGtaTta11B.1.1950.005025
ORF3a202V202LGtaTta11B.1.2180.005155
ORF3a202V202LGtaTta11B.1.258.110.000396
ORF3a202V202LGtaTta11B.1.258.30.001675
ORF3a202V202LGtaTta11B.1.2650.001271
ORF3a202V202LGtaTta11B.1.2680.010417
ORF3a202V202LGtaTta11B.1.3010.005917
ORF3a202V202LGtaTta11B.1.3290.000608
ORF3a202V202LGtaTta11B.1.350.008475
ORF3a202V202LGtaTta11B.1.351.20.000303
ORF3a202V202LGtaTta11B.1.36.220.001208
ORF3a202V202LGtaTta11B.1.36.340.021277
ORF3a202V202LGtaTta11B.1.36.80.001
ORF3a202V202LGtaTta11B.1.3670.000792
ORF3a202V202LGtaTta11B.1.3820.008929
ORF3a202V202LGtaTta11B.1.4020.009804
ORF3a202V202LGtaTta11B.1.415.10.007576
ORF3a202V202LGtaTta11B.1.416.10.001563
ORF3a202V202LGtaTta11B.1.438.10.000107
ORF3a202V202LGtaTta11B.1.4700.001404
ORF3a202V202LGtaTta11B.1.4730.019231
ORF3a202V202LGtaTta11B.1.5380.008065
ORF3a202V202LGtaTta11B.1.5430.01
ORF3a202V202LGtaTta11B.1.5580.004566
ORF3a202V202LGtaTta11B.1.5740.002151
ORF3a202V202LGtaTta11B.1.5780.017857
ORF3a202V202LGtaTta11B.1.5800.004065
ORF3a202V202LGtaTta11B.1.6000.005848
ORF3a202V202LGtaTta11B.1.6030.010638
ORF3a202V202LGtaTta11B.1.6250.002353
ORF3a202V202LGtaTta11B.1.6370.000073
ORF3a202V202LGtaTta11B.1.930.000934
ORF3a202V202LGtaTta11B.1.940.027027
ORF3a202V202LGtaTta11B.3.10.001658
ORF3a202V202LGtaTta11B.400.000364
ORF3a202V202LGtaTta11B.550.00295
ORF3a202V202LGtaTta11B.600.015873
ORF3a202V202LGtaTta11C.270.018519
ORF3a202V202LGtaTta11C.40.01
ORF3a202V202LGtaTta11L.30.003546
ORF3a202V202LGtaTta11N.50.001767
ORF3a202V202LGtaTta11N.90.005952
ORF3a202V202LGtaTta11P.1.10.000318
ORF3a202V202LGtaTta11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.