CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 202 & Codon = Cta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a202V202LnonsynGtaCta369252500.0067704825996-25998

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a202V202LGtaCta25036925All0.000048
ORF3a202V202LGtaCta213601B.1.2210.000142
ORF3a202V202LGtaCta185047B.1.617.20.000068
ORF3a202V202LGtaCta121885B.1.1.70.000011
ORF3a202V202LGtaCta11543AY.40.000017
ORF3a202V202LGtaCta1296AY.420.00004
ORF3a202V202LGtaCta2293AY.1030.000012
ORF3a202V202LGtaCta1281AY.9.20.000037
ORF3a202V202LGtaCta1265B.1.20.000009
ORF3a202V202LGtaCta5246P.10.000079
ORF3a202V202LGtaCta5164B.10.000046
ORF3a202V202LGtaCta1162AY.430.000004
ORF3a202V202LGtaCta134147AY.290.002114
ORF3a202V202LGtaCta3137AY.440.000018
ORF3a202V202LGtaCta197B.1.3510.00003
ORF3a202V202LGtaCta186AY.330.000067
ORF3a202V202LGtaCta154AY.99.20.000092
ORF3a202V202LGtaCta149B.1.177.40.000211
ORF3a202V202LGtaCta147AY.690.000187
ORF3a202V202LGtaCta133AY.1190.000035
ORF3a202V202LGtaCta130AY.50.000021
ORF3a202V202LGtaCta129AY.1180.000063
ORF3a202V202LGtaCta223AY.1000.000092
ORF3a202V202LGtaCta122AY.1020.000027
ORF3a202V202LGtaCta221B.1.177.210.000153
ORF3a202V202LGtaCta1420AY.60.000576
ORF3a202V202LGtaCta316D.20.000225
ORF3a202V202LGtaCta114C.370.000116
ORF3a202V202LGtaCta112AY.4.20.000022
ORF3a202V202LGtaCta110B.1.4290.000024
ORF3a202V202LGtaCta110B.1.617.10.000129
ORF3a202V202LGtaCta29AY.29.10.000441
ORF3a202V202LGtaCta19B0.000128
ORF3a202V202LGtaCta28AY.990.002099
ORF3a202V202LGtaCta16B.1.5960.000087
ORF3a202V202LGtaCta14AY.610.000105
ORF3a202V202LGtaCta14R.10.00009
ORF3a202V202LGtaCta13B.1.466.20.000391
ORF3a202V202LGtaCta12AY.530.000288
ORF3a202V202LGtaCta22AY.970.003401
ORF3a202V202LGtaCta22B.1.4110.007407
ORF3a202V202LGtaCta11AY.1010.00049
ORF3a202V202LGtaCta11AY.4.40.000409
ORF3a202V202LGtaCta11B.1.1.1760.000439
ORF3a202V202LGtaCta11B.1.3800.006623
ORF3a202V202LGtaCta11B.1.4970.000315
ORF3a202V202LGtaCta11B.1.80.001972

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.