CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 202 & Codon = Ata

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a202V202InonsynGtaAta15151515125996-25998

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a202V202IGtaAta15151515All0.00029
ORF3a202V202IGtaAta654654B.10.00599
ORF3a202V202IGtaAta293293B.1.1.70.000262
ORF3a202V202IGtaAta194194B.1.88.10.932692
ORF3a202V202IGtaAta116116AY.1030.00072
ORF3a202V202IGtaAta4949AY.40.000076
ORF3a202V202IGtaAta4343B.1.20.000379
ORF3a202V202IGtaAta1717B.1.1600.00053
ORF3a202V202IGtaAta1717B.1.617.20.000064
ORF3a202V202IGtaAta1010AY.750.00056
ORF3a202V202IGtaAta88AY.1020.000212
ORF3a202V202IGtaAta77AY.290.00011
ORF3a202V202IGtaAta55AY.340.000485
ORF3a202V202IGtaAta55AY.430.000022
ORF3a202V202IGtaAta55B.1.3960.003529
ORF3a202V202IGtaAta55B.1.6370.000365
ORF3a202V202IGtaAta44B.1.5640.001704
ORF3a202V202IGtaAta44Q.80.00066
ORF3a202V202IGtaAta33AY.1170.000254
ORF3a202V202IGtaAta33AY.250.000018
ORF3a202V202IGtaAta33AY.30.00003
ORF3a202V202IGtaAta33AY.440.000018
ORF3a202V202IGtaAta33B.1.1820.021739
ORF3a202V202IGtaAta33B.1.4000.001287
ORF3a202V202IGtaAta22AY.200.000078
ORF3a202V202IGtaAta22AY.4.20.000043
ORF3a202V202IGtaAta22AY.470.000062
ORF3a202V202IGtaAta22B.1.1.1570.001826
ORF3a202V202IGtaAta22B.1.1430.042553
ORF3a202V202IGtaAta22B.1.1670.015625
ORF3a202V202IGtaAta22B.1.2210.000142
ORF3a202V202IGtaAta22B.1.2320.001075
ORF3a202V202IGtaAta22B.1.3510.000059
ORF3a202V202IGtaAta22B.1.466.20.000782
ORF3a202V202IGtaAta22B.1.5450.028986
ORF3a202V202IGtaAta22B.1.5760.001813
ORF3a202V202IGtaAta22Q.10.000253
ORF3a202V202IGtaAta11AY.1000.000046
ORF3a202V202IGtaAta11AY.1100.000113
ORF3a202V202IGtaAta11AY.1160.000287
ORF3a202V202IGtaAta11AY.1190.000035
ORF3a202V202IGtaAta11AY.120.10.000321
ORF3a202V202IGtaAta11AY.270.000065
ORF3a202V202IGtaAta11AY.420.00004
ORF3a202V202IGtaAta11AY.5.20.002463
ORF3a202V202IGtaAta11AY.650.000533
ORF3a202V202IGtaAta11AY.910.00073
ORF3a202V202IGtaAta11B.1.10.000018
ORF3a202V202IGtaAta11B.1.1.390.00051
ORF3a202V202IGtaAta11B.1.1.4200.001006
ORF3a202V202IGtaAta11B.1.1150.021739
ORF3a202V202IGtaAta11B.1.160.160.000929
ORF3a202V202IGtaAta11B.1.160.320.004292
ORF3a202V202IGtaAta11B.1.1770.000013
ORF3a202V202IGtaAta11B.1.177.60.000977
ORF3a202V202IGtaAta11B.1.177.720.00339
ORF3a202V202IGtaAta11B.1.177.730.000566
ORF3a202V202IGtaAta11B.1.1890.004292
ORF3a202V202IGtaAta11B.1.1990.004132
ORF3a202V202IGtaAta11B.1.2060.000816
ORF3a202V202IGtaAta11B.1.2400.000216
ORF3a202V202IGtaAta11B.1.3290.000608
ORF3a202V202IGtaAta11B.1.360.000146
ORF3a202V202IGtaAta11B.1.36.310.001751
ORF3a202V202IGtaAta11B.1.3690.000285
ORF3a202V202IGtaAta11B.1.3710.001122
ORF3a202V202IGtaAta11B.1.3820.008929
ORF3a202V202IGtaAta11B.1.5030.002488
ORF3a202V202IGtaAta11B.1.910.002075
ORF3a202V202IGtaAta11P.10.000016
ORF3a202V202IGtaAta11P.1.140.000048
ORF3a202V202IGtaAta11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.