CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 196 & Codon = ggT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a196G196GsynggAggT7201220.16944425978-25980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a196G196GggAggT122720All0.000023
ORF3a196G196GggAggT53280B.1.1.70.000047
ORF3a196G196GggAggT2100AY.250.000012
ORF3a196G196GggAggT160AY.40.000002
ORF3a196G196GggAggT128B.1.20.000009
ORF3a196G196GggAggT2026B.1.617.20.000075
ORF3a196G196GggAggT615B.10.000055
ORF3a196G196GggAggT79B.1.10.000127
ORF3a196G196GggAggT58AY.440.00003
ORF3a196G196GggAggT36P.10.000047
ORF3a196G196GggAggT25AY.430.000009
ORF3a196G196GggAggT14AY.330.000067
ORF3a196G196GggAggT12AY.1200.000037
ORF3a196G196GggAggT22AY.30.00002
ORF3a196G196GggAggT22AY.690.000373
ORF3a196G196GggAggT22AY.980.000158
ORF3a196G196GggAggT22B.1.1.3690.000892
ORF3a196G196GggAggT22B.1.2580.000133
ORF3a196G196GggAggT22C.36.30.001134
ORF3a196G196GggAggT11AY.1020.000027
ORF3a196G196GggAggT11AY.3.10.000085
ORF3a196G196GggAggT11AY.320.000532
ORF3a196G196GggAggT11AY.420.00004
ORF3a196G196GggAggT11B.1.1.500.000679
ORF3a196G196GggAggT11B.1.1600.000031
ORF3a196G196GggAggT11B.1.258.20.004505
ORF3a196G196GggAggT11B.1.5260.000024

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.