CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 196 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a196G196deldelGGA---3232125978-25980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a196G196delGGA---3232All0.000006
ORF3a196G196delGGA---77B.1.1.70.000006
ORF3a196G196delGGA---33B.1.617.20.000011
ORF3a196G196delGGA---22A.2.50.000998
ORF3a196G196delGGA---22AY.40.000003
ORF3a196G196delGGA---22AY.430.000009
ORF3a196G196delGGA---22B.1.1770.000026
ORF3a196G196delGGA---22B.1.20.000018
ORF3a196G196delGGA---22C.350.001548
ORF3a196G196delGGA---11AY.1200.000037
ORF3a196G196delGGA---11AY.460.000104
ORF3a196G196delGGA---11AY.680.000274
ORF3a196G196delGGA---11AY.7.20.000559
ORF3a196G196delGGA---11AY.90.000068
ORF3a196G196delGGA---11B.10.000009
ORF3a196G196delGGA---11B.1.177.730.000566
ORF3a196G196delGGA---11B.1.2210.000071
ORF3a196G196delGGA---11B.1.5770.000687
ORF3a196G196delGGA---11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.