CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 196 | G196V | nonsyn | gGa | gTa | 5634 | 5591 | 0.992368 | 25978-25980 | |
ORF3a | 196 | G196V | nonsyn | gGA | gTC | 5634 | 22 | 0.00390486 | 25978-25980 | |
ORF3a | 196 | G196V | nonsyn | gGA | gTT | 5634 | 21 | 0.00372737 | 25978-25980 | |
ORF3a | 196 | G196G | syn | ggA | ggC | 720 | 336 | 0.466667 | 25978-25980 | |
ORF3a | 196 | G196G | syn | ggA | ggG | 720 | 262 | 0.363889 | 25978-25980 | |
ORF3a | 196 | G196G | syn | ggA | ggT | 720 | 122 | 0.169444 | 25978-25980 | |
ORF3a | 196 | G196R | nonsyn | Gga | Aga | 338 | 336 | 0.994083 | 25978-25980 | |
ORF3a | 196 | G196R | nonsyn | Gga | Cga | 338 | 2 | 0.00591716 | 25978-25980 | |
ORF3a | 196 | G196E | nonsyn | gGa | gAa | 322 | 320 | 0.993789 | 25978-25980 | |
ORF3a | 196 | G196E | nonsyn | gGA | gAG | 322 | 2 | 0.00621118 | 25978-25980 | |
ORF3a | 196 | G196X | nonsyn | Gga | Tga | 43 | 36 | 0.837209 | 25978-25980 | |
ORF3a | 196 | G196X | nonsyn | GGa | TAa | 43 | 7 | 0.162791 | 25978-25980 | |
ORF3a | 196 | G196L | nonsyn | GGa | TTa | 35 | 35 | 1 | 25978-25980 | |
ORF3a | 196 | G196del | del | GGA | --- | 32 | 32 | 1 | 25978-25980 | |
ORF3a | 196 | G196I | nonsyn | GGa | ATa | 30 | 16 | 0.533333 | 25978-25980 | |
ORF3a | 196 | G196I | nonsyn | GGA | ATT | 30 | 14 | 0.466667 | 25978-25980 | |
ORF3a | 196 | G196S | nonsyn | GgA | AgT | 20 | 20 | 1 | 25978-25980 | |
ORF3a | 196 | G196C | nonsyn | GgA | TgT | 18 | 18 | 1 | 25978-25980 | |
ORF3a | 196 | G196del1 | del | Gga | -ga | 17 | 8 | 0.470588 | 25978-25980 | |
ORF3a | 196 | G196del1 | del | ggA | gg- | 17 | 7 | 0.411765 | 25978-25980 | |
ORF3a | 196 | G196del1 | del | GgA | Ng- | 17 | 2 | 0.117647 | 25978-25980 | |
ORF3a | 196 | G196K | nonsyn | GGa | AAa | 16 | 16 | 1 | 25978-25980 | |
ORF3a | 196 | G196D | nonsyn | gGA | gAT | 15 | 15 | 1 | 25978-25980 | |
ORF3a | 196 | G196F | nonsyn | GGA | TTT | 15 | 15 | 1 | 25978-25980 | |
ORF3a | 196 | G196N | nonsyn | GGA | AAT | 13 | 13 | 1 | 25978-25980 | |
ORF3a | 196 | G196Y | nonsyn | GGA | TAT | 7 | 7 | 1 | 25978-25980 | |
ORF3a | 196 | G196del2 | del | gGA | g-- | 3 | 2 | 0.666667 | 25978-25980 | |
ORF3a | 196 | G196del2 | del | GGA | --N | 3 | 1 | 0.333333 | 25978-25980 | |
ORF3a | 196 | G196W | nonsyn | GgA | TgG | 1 | 1 | 1 | 25978-25980 | |
ORF3a | 196 | G196A | nonsyn | gGa | gCa | 1 | 1 | 1 | 25978-25980 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 196 | G196V | gGa | gTa | 5591 | 5634 | All | 0.001069 |
ORF3a | 196 | G196V | gGA | gTC | 22 | 5634 | All | 0.000004 |
ORF3a | 196 | G196V | gGA | gTT | 21 | 5634 | All | 0.000004 |
ORF3a | 196 | G196V | gGa | gTa | 1917 | 1917 | A.2.5 | 0.956587 |
ORF3a | 196 | G196V | gGa | gTa | 1278 | 1278 | A.2 | 0.845797 |
ORF3a | 196 | G196G | ggA | ggC | 336 | 720 | All | 0.000064 |
ORF3a | 196 | G196G | ggA | ggG | 262 | 720 | All | 0.00005 |
ORF3a | 196 | G196G | ggA | ggT | 122 | 720 | All | 0.000023 |
ORF3a | 196 | G196V | gGa | gTa | 621 | 621 | A.2.5.2 | 0.976415 |
ORF3a | 196 | G196V | gGa | gTa | 589 | 589 | A.2.2 | 0.994932 |
ORF3a | 196 | G196R | Gga | Aga | 336 | 338 | All | 0.000064 |
ORF3a | 196 | G196R | Gga | Cga | 2 | 338 | All | 0 |
ORF3a | 196 | G196E | gGa | gAa | 320 | 322 | All | 0.000061 |
ORF3a | 196 | G196E | gGA | gAG | 2 | 322 | All | 0 |
ORF3a | 196 | G196V | gGa | gTa | 296 | 296 | A.2.4 | 0.996633 |
ORF3a | 196 | G196G | ggA | ggC | 200 | 280 | B.1.1.7 | 0.000179 |
ORF3a | 196 | G196G | ggA | ggT | 53 | 280 | B.1.1.7 | 0.000047 |
ORF3a | 196 | G196G | ggA | ggG | 27 | 280 | B.1.1.7 | 0.000024 |
ORF3a | 196 | G196V | gGa | gTa | 207 | 207 | A.2.5.1 | 0.995192 |
ORF3a | 196 | G196V | gGa | gTa | 201 | 201 | A.2.3 | 0.952607 |
ORF3a | 196 | G196E | gGa | gAa | 120 | 120 | B.1.258.17 | 0.012477 |
ORF3a | 196 | G196G | ggA | ggC | 65 | 100 | AY.25 | 0.000391 |
ORF3a | 196 | G196G | ggA | ggG | 33 | 100 | AY.25 | 0.000198 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 100 | AY.25 | 0.000012 |
ORF3a | 196 | G196V | gGa | gTa | 92 | 92 | A.2.5.3 | 0.948454 |
ORF3a | 196 | G196V | gGa | gTa | 85 | 85 | AY.4 | 0.000132 |
ORF3a | 196 | G196V | gGa | gTa | 43 | 62 | B.1.1.7 | 0.000038 |
ORF3a | 196 | G196V | gGA | gTT | 19 | 62 | B.1.1.7 | 0.000017 |
ORF3a | 196 | G196G | ggA | ggG | 36 | 60 | AY.4 | 0.000056 |
ORF3a | 196 | G196G | ggA | ggC | 23 | 60 | AY.4 | 0.000036 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 60 | AY.4 | 0.000002 |
ORF3a | 196 | G196E | gGa | gAa | 59 | 59 | B.1.1.7 | 0.000053 |
ORF3a | 196 | G196R | Gga | Aga | 56 | 56 | B.1.1.7 | 0.00005 |
ORF3a | 196 | G196V | gGa | gTa | 48 | 48 | B.1.177 | 0.000632 |
ORF3a | 196 | G196X | Gga | Tga | 36 | 43 | All | 0.000007 |
ORF3a | 196 | G196X | GGa | TAa | 7 | 43 | All | 0.000001 |
ORF3a | 196 | G196E | gGa | gAa | 41 | 41 | P.1 | 0.000646 |
ORF3a | 196 | G196R | Gga | Aga | 39 | 39 | B.1.509 | 0.033766 |
ORF3a | 196 | G196L | GGa | TTa | 35 | 35 | All | 0.000007 |
ORF3a | 196 | G196R | Gga | Aga | 35 | 35 | AY.25 | 0.000211 |
ORF3a | 196 | G196R | Gga | Aga | 35 | 35 | AY.4.2 | 0.000759 |
ORF3a | 196 | G196R | Gga | Aga | 34 | 34 | AY.4 | 0.000053 |
ORF3a | 196 | G196del | GGA | --- | 32 | 32 | All | 0.000006 |
ORF3a | 196 | G196I | GGa | ATa | 16 | 30 | All | 0.000003 |
ORF3a | 196 | G196I | GGA | ATT | 14 | 30 | All | 0.000003 |
ORF3a | 196 | G196X | Gga | Tga | 21 | 28 | B.1.1.7 | 0.000019 |
ORF3a | 196 | G196I | GGa | ATa | 15 | 28 | B.1.1.7 | 0.000013 |
ORF3a | 196 | G196I | GGA | ATT | 13 | 28 | B.1.1.7 | 0.000012 |
ORF3a | 196 | G196X | GGa | TAa | 7 | 28 | B.1.1.7 | 0.000006 |
ORF3a | 196 | G196G | ggA | ggG | 26 | 28 | B.1.2 | 0.000229 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 28 | B.1.2 | 0.000009 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 28 | B.1.2 | 0.000009 |
ORF3a | 196 | G196L | GGa | TTa | 27 | 27 | B.1.1.7 | 0.000024 |
ORF3a | 196 | G196G | ggA | ggG | 26 | 26 | AY.111 | 0.004762 |
ORF3a | 196 | G196V | gGA | gTC | 22 | 26 | AY.25 | 0.000132 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 26 | AY.25 | 0.000024 |
ORF3a | 196 | G196E | gGa | gAa | 26 | 26 | B.1.617.2 | 0.000098 |
ORF3a | 196 | G196G | ggA | ggT | 20 | 26 | B.1.617.2 | 0.000075 |
ORF3a | 196 | G196G | ggA | ggC | 4 | 26 | B.1.617.2 | 0.000015 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 26 | B.1.617.2 | 0.000008 |
ORF3a | 196 | G196R | Gga | Aga | 24 | 25 | AY.3 | 0.000239 |
ORF3a | 196 | G196R | Gga | Cga | 1 | 25 | AY.3 | 0.00001 |
ORF3a | 196 | G196V | gGa | gTa | 23 | 23 | AY.26 | 0.000651 |
ORF3a | 196 | G196V | gGa | gTa | 21 | 21 | AY.44 | 0.000128 |
ORF3a | 196 | G196S | GgA | AgT | 20 | 20 | All | 0.000004 |
ORF3a | 196 | G196C | GgA | TgT | 18 | 18 | All | 0.000003 |
ORF3a | 196 | G196del1 | Gga | -ga | 8 | 17 | All | 0.000002 |
ORF3a | 196 | G196del1 | ggA | gg- | 7 | 17 | All | 0.000001 |
ORF3a | 196 | G196del1 | GgA | Ng- | 2 | 17 | All | 0 |
ORF3a | 196 | G196G | ggA | ggG | 12 | 17 | AY.103 | 0.000075 |
ORF3a | 196 | G196G | ggA | ggC | 5 | 17 | AY.103 | 0.000031 |
ORF3a | 196 | G196S | GgA | AgT | 17 | 17 | B.1.1.7 | 0.000015 |
ORF3a | 196 | G196R | Gga | Aga | 17 | 17 | P.1 | 0.000268 |
ORF3a | 196 | G196K | GGa | AAa | 16 | 16 | All | 0.000003 |
ORF3a | 196 | G196C | GgA | TgT | 16 | 16 | B.1.1.7 | 0.000014 |
ORF3a | 196 | G196V | gGa | gTa | 16 | 16 | B.1.617.2 | 0.00006 |
ORF3a | 196 | G196D | gGA | gAT | 15 | 15 | All | 0.000003 |
ORF3a | 196 | G196F | GGA | TTT | 15 | 15 | All | 0.000003 |
ORF3a | 196 | G196V | gGa | gTa | 15 | 15 | AY.34 | 0.001454 |
ORF3a | 196 | G196G | ggA | ggG | 7 | 15 | B.1 | 0.000064 |
ORF3a | 196 | G196G | ggA | ggT | 6 | 15 | B.1 | 0.000055 |
ORF3a | 196 | G196G | ggA | ggC | 2 | 15 | B.1 | 0.000018 |
ORF3a | 196 | G196K | GGa | AAa | 14 | 14 | B.1.1.7 | 0.000013 |
ORF3a | 196 | G196F | GGA | TTT | 14 | 14 | B.1.1.7 | 0.000013 |
ORF3a | 196 | G196N | GGA | AAT | 13 | 13 | All | 0.000002 |
ORF3a | 196 | G196V | gGa | gTa | 13 | 13 | AY.103 | 0.000081 |
ORF3a | 196 | G196G | ggA | ggG | 13 | 13 | B.1.1.446 | 1 |
ORF3a | 196 | G196D | gGA | gAT | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 196 | G196G | ggA | ggC | 13 | 13 | B.4 | 0.028698 |
ORF3a | 196 | G196R | Gga | Aga | 12 | 12 | AY.44 | 0.000073 |
ORF3a | 196 | G196N | GGA | AAT | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 196 | G196G | ggA | ggG | 10 | 10 | B.1.596 | 0.000871 |
ORF3a | 196 | G196G | ggA | ggG | 9 | 9 | AY.116 | 0.002581 |
ORF3a | 196 | G196G | ggA | ggT | 7 | 9 | B.1.1 | 0.000127 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 9 | B.1.1 | 0.000018 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 9 | B.1.1 | 0.000018 |
ORF3a | 196 | G196R | Gga | Aga | 8 | 8 | AY.39 | 0.000198 |
ORF3a | 196 | G196E | gGa | gAa | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 196 | G196R | Gga | Aga | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 196 | G196E | gGa | gAa | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 196 | G196G | ggA | ggT | 5 | 8 | AY.44 | 0.00003 |
ORF3a | 196 | G196G | ggA | ggG | 3 | 8 | AY.44 | 0.000018 |
ORF3a | 196 | G196V | gGa | gTa | 8 | 8 | B.1.1.519 | 0.000318 |
ORF3a | 196 | G196R | Gga | Aga | 8 | 8 | B.1.2 | 0.00007 |
ORF3a | 196 | G196Y | GGA | TAT | 7 | 7 | All | 0.000001 |
ORF3a | 196 | G196del | GGA | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 196 | G196R | Gga | Aga | 7 | 7 | B.1.177.21 | 0.000535 |
ORF3a | 196 | G196R | Gga | Aga | 7 | 7 | B.1.429 | 0.000165 |
ORF3a | 196 | G196V | gGa | gTa | 5 | 7 | P.1 | 0.000079 |
ORF3a | 196 | G196V | gGA | gTT | 2 | 7 | P.1 | 0.000032 |
ORF3a | 196 | G196V | gGa | gTa | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 196 | G196V | gGa | gTa | 6 | 6 | B.1 | 0.000055 |
ORF3a | 196 | G196X | Gga | Tga | 6 | 6 | B.1 | 0.000055 |
ORF3a | 196 | G196Y | GGA | TAT | 6 | 6 | B.1.1.7 | 0.000005 |
ORF3a | 196 | G196G | ggA | ggT | 3 | 6 | P.1 | 0.000047 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 6 | P.1 | 0.000032 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 6 | P.1 | 0.000016 |
ORF3a | 196 | G196G | ggA | ggG | 6 | 6 | P.1.15 | 0.001394 |
ORF3a | 196 | G196E | gGa | gAa | 5 | 5 | AY.107 | 0.00233 |
ORF3a | 196 | G196V | gGa | gTa | 5 | 5 | AY.39 | 0.000124 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 5 | AY.43 | 0.000009 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 5 | AY.43 | 0.000009 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 196 | G196E | gGa | gAa | 5 | 5 | B.1 | 0.000046 |
ORF3a | 196 | G196del1 | ggA | gg- | 3 | 5 | B.1.1.7 | 0.000003 |
ORF3a | 196 | G196del1 | Gga | -ga | 2 | 5 | B.1.1.7 | 0.000002 |
ORF3a | 196 | G196V | gGa | gTa | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 196 | G196G | ggA | ggC | 5 | 5 | B.1.621 | 0.000443 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 4 | A | 0.001548 |
ORF3a | 196 | G196R | Gga | Aga | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 196 | G196G | ggA | ggG | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 196 | G196E | gGa | gAa | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 196 | G196G | ggA | ggG | 3 | 4 | AY.33 | 0.0002 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 4 | AY.33 | 0.000067 |
ORF3a | 196 | G196G | ggA | ggG | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 4 | B | 0.000511 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 196 | G196V | gGa | gTa | 4 | 4 | B.1.177.4 | 0.000844 |
ORF3a | 196 | G196R | Gga | Aga | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 196 | G196del2 | gGA | g-- | 2 | 3 | All | 0 |
ORF3a | 196 | G196del2 | GGA | --N | 1 | 3 | All | 0 |
ORF3a | 196 | G196E | gGa | gAa | 3 | 3 | AY.1 | 0.001187 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 196 | G196L | GGa | TTa | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 196 | G196E | gGa | gAa | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 196 | G196E | gGa | gAa | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 196 | G196G | ggA | ggC | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 196 | G196G | ggA | ggG | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 196 | G196E | gGa | gAa | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 196 | G196R | Gga | Aga | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 196 | G196R | Gga | Aga | 3 | 3 | B.1 | 0.000027 |
ORF3a | 196 | G196R | Gga | Aga | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 196 | G196G | ggA | ggC | 3 | 3 | B.1.160.28 | 0.008772 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | B.1.239 | 0.003663 |
ORF3a | 196 | G196del1 | ggA | gg- | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 196 | G196V | gGa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 196 | G196del | GGA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 196 | G196G | ggA | ggG | 3 | 3 | C.37 | 0.000348 |
ORF3a | 196 | G196G | ggA | ggG | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 196 | G196del1 | GgA | Ng- | 2 | 2 | 0.111111 | |
ORF3a | 196 | G196E | gGA | gAG | 2 | 2 | 0.111111 | |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | A.3 | 0.004193 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 2 | AY.120 | 0.000037 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 2 | AY.120 | 0.000037 |
ORF3a | 196 | G196R | Gga | Aga | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 196 | G196R | Gga | Aga | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 196 | G196R | Gga | Aga | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 196 | G196R | Gga | Aga | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 196 | G196del1 | Gga | -ga | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | B.1.1.192 | 0.004619 |
ORF3a | 196 | G196G | ggA | ggC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 196 | G196R | Gga | Aga | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | B.1.1.344 | 0.021505 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 196 | G196del2 | gGA | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | B.1.524 | 0.002813 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | B.1.564.1 | 0.003155 |
ORF3a | 196 | G196G | ggA | ggG | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 196 | G196del | GGA | --- | 2 | 2 | C.35 | 0.001548 |
ORF3a | 196 | G196G | ggA | ggT | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 196 | G196V | gGa | gTa | 2 | 2 | C.37 | 0.000232 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | N.5 | 0.003534 |
ORF3a | 196 | G196S | GgA | AgT | 2 | 2 | P.1 | 0.000032 |
ORF3a | 196 | G196I | GGA | ATT | 1 | 2 | P.1 | 0.000016 |
ORF3a | 196 | G196I | GGa | ATa | 1 | 2 | P.1 | 0.000016 |
ORF3a | 196 | G196E | gGa | gAa | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 196 | G196G | ggA | ggC | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 196 | G196del1 | Gga | -ga | 1 | 1 | A | 0.000387 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | A | 0.000387 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | A.5 | 0.001923 |
ORF3a | 196 | G196W | GgA | TgG | 1 | 1 | All | 0 |
ORF3a | 196 | G196A | gGa | gCa | 1 | 1 | All | 0 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AY.115 | 0.005208 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 196 | G196del1 | Gga | -ga | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 196 | G196A | gGa | gCa | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 196 | G196del1 | Gga | -ga | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 196 | G196L | GGa | TTa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 196 | G196L | GGa | TTa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 196 | G196C | GgA | TgT | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 196 | G196del1 | Gga | -ga | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 196 | G196S | GgA | AgT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196D | gGA | gAT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196Y | GGA | TAT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196N | GGA | AAT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196K | GGa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 196 | G196L | GGa | TTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 196 | G196del1 | ggA | gg- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.1.87 | 0.066667 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.177.25 | 0.014925 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 196 | G196del2 | GGA | --N | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.187 | 0.033333 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 196 | G196R | Gga | Cga | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 196 | G196G | ggA | ggT | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 196 | G196W | GgA | TgG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.40 | 0.000364 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | B.52 | 0.010101 |
ORF3a | 196 | G196G | ggA | ggG | 1 | 1 | C.37.1 | 0.002618 |
ORF3a | 196 | G196V | gGa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF3a | 196 | G196G | ggA | ggC | 1 | 1 | N.5 | 0.001767 |
ORF3a | 196 | G196K | GGa | AAa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196N | GGA | AAT | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196D | gGA | gAT | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196C | GgA | TgT | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196F | GGA | TTT | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196X | Gga | Tga | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196L | GGa | TTa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 196 | G196R | Gga | Aga | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 196 | G196del | GGA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 196 | G196E | gGa | gAa | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 196 | G196L | GGa | TTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|