CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 196

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a196G196VnonsyngGagTa563455910.99236825978-25980
ORF3a196G196VnonsyngGAgTC5634220.0039048625978-25980
ORF3a196G196VnonsyngGAgTT5634210.0037273725978-25980
ORF3a196G196GsynggAggC7203360.46666725978-25980
ORF3a196G196GsynggAggG7202620.36388925978-25980
ORF3a196G196GsynggAggT7201220.16944425978-25980
ORF3a196G196RnonsynGgaAga3383360.99408325978-25980
ORF3a196G196RnonsynGgaCga33820.0059171625978-25980
ORF3a196G196EnonsyngGagAa3223200.99378925978-25980
ORF3a196G196EnonsyngGAgAG32220.0062111825978-25980
ORF3a196G196XnonsynGgaTga43360.83720925978-25980
ORF3a196G196XnonsynGGaTAa4370.16279125978-25980
ORF3a196G196LnonsynGGaTTa3535125978-25980
ORF3a196G196deldelGGA---3232125978-25980
ORF3a196G196InonsynGGaATa30160.53333325978-25980
ORF3a196G196InonsynGGAATT30140.46666725978-25980
ORF3a196G196SnonsynGgAAgT2020125978-25980
ORF3a196G196CnonsynGgATgT1818125978-25980
ORF3a196G196del1delGga-ga1780.47058825978-25980
ORF3a196G196del1delggAgg-1770.41176525978-25980
ORF3a196G196del1delGgANg-1720.11764725978-25980
ORF3a196G196KnonsynGGaAAa1616125978-25980
ORF3a196G196DnonsyngGAgAT1515125978-25980
ORF3a196G196FnonsynGGATTT1515125978-25980
ORF3a196G196NnonsynGGAAAT1313125978-25980
ORF3a196G196YnonsynGGATAT77125978-25980
ORF3a196G196del2delgGAg--320.66666725978-25980
ORF3a196G196del2delGGA--N310.33333325978-25980
ORF3a196G196WnonsynGgATgG11125978-25980
ORF3a196G196AnonsyngGagCa11125978-25980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a196G196VgGagTa55915634All0.001069
ORF3a196G196VgGAgTC225634All0.000004
ORF3a196G196VgGAgTT215634All0.000004
ORF3a196G196VgGagTa19171917A.2.50.956587
ORF3a196G196VgGagTa12781278A.20.845797
ORF3a196G196GggAggC336720All0.000064
ORF3a196G196GggAggG262720All0.00005
ORF3a196G196GggAggT122720All0.000023
ORF3a196G196VgGagTa621621A.2.5.20.976415
ORF3a196G196VgGagTa589589A.2.20.994932
ORF3a196G196RGgaAga336338All0.000064
ORF3a196G196RGgaCga2338All0
ORF3a196G196EgGagAa320322All0.000061
ORF3a196G196EgGAgAG2322All0
ORF3a196G196VgGagTa296296A.2.40.996633
ORF3a196G196GggAggC200280B.1.1.70.000179
ORF3a196G196GggAggT53280B.1.1.70.000047
ORF3a196G196GggAggG27280B.1.1.70.000024
ORF3a196G196VgGagTa207207A.2.5.10.995192
ORF3a196G196VgGagTa201201A.2.30.952607
ORF3a196G196EgGagAa120120B.1.258.170.012477
ORF3a196G196GggAggC65100AY.250.000391
ORF3a196G196GggAggG33100AY.250.000198
ORF3a196G196GggAggT2100AY.250.000012
ORF3a196G196VgGagTa9292A.2.5.30.948454
ORF3a196G196VgGagTa8585AY.40.000132
ORF3a196G196VgGagTa4362B.1.1.70.000038
ORF3a196G196VgGAgTT1962B.1.1.70.000017
ORF3a196G196GggAggG3660AY.40.000056
ORF3a196G196GggAggC2360AY.40.000036
ORF3a196G196GggAggT160AY.40.000002
ORF3a196G196EgGagAa5959B.1.1.70.000053
ORF3a196G196RGgaAga5656B.1.1.70.00005
ORF3a196G196VgGagTa4848B.1.1770.000632
ORF3a196G196XGgaTga3643All0.000007
ORF3a196G196XGGaTAa743All0.000001
ORF3a196G196EgGagAa4141P.10.000646
ORF3a196G196RGgaAga3939B.1.5090.033766
ORF3a196G196LGGaTTa3535All0.000007
ORF3a196G196RGgaAga3535AY.250.000211
ORF3a196G196RGgaAga3535AY.4.20.000759
ORF3a196G196RGgaAga3434AY.40.000053
ORF3a196G196delGGA---3232All0.000006
ORF3a196G196IGGaATa1630All0.000003
ORF3a196G196IGGAATT1430All0.000003
ORF3a196G196XGgaTga2128B.1.1.70.000019
ORF3a196G196IGGaATa1528B.1.1.70.000013
ORF3a196G196IGGAATT1328B.1.1.70.000012
ORF3a196G196XGGaTAa728B.1.1.70.000006
ORF3a196G196GggAggG2628B.1.20.000229
ORF3a196G196GggAggC128B.1.20.000009
ORF3a196G196GggAggT128B.1.20.000009
ORF3a196G196LGGaTTa2727B.1.1.70.000024
ORF3a196G196GggAggG2626AY.1110.004762
ORF3a196G196VgGAgTC2226AY.250.000132
ORF3a196G196VgGagTa426AY.250.000024
ORF3a196G196EgGagAa2626B.1.617.20.000098
ORF3a196G196GggAggT2026B.1.617.20.000075
ORF3a196G196GggAggC426B.1.617.20.000015
ORF3a196G196GggAggG226B.1.617.20.000008
ORF3a196G196RGgaAga2425AY.30.000239
ORF3a196G196RGgaCga125AY.30.00001
ORF3a196G196VgGagTa2323AY.260.000651
ORF3a196G196VgGagTa2121AY.440.000128
ORF3a196G196SGgAAgT2020All0.000004
ORF3a196G196CGgATgT1818All0.000003
ORF3a196G196del1Gga-ga817All0.000002
ORF3a196G196del1ggAgg-717All0.000001
ORF3a196G196del1GgANg-217All0
ORF3a196G196GggAggG1217AY.1030.000075
ORF3a196G196GggAggC517AY.1030.000031
ORF3a196G196SGgAAgT1717B.1.1.70.000015
ORF3a196G196RGgaAga1717P.10.000268
ORF3a196G196KGGaAAa1616All0.000003
ORF3a196G196CGgATgT1616B.1.1.70.000014
ORF3a196G196VgGagTa1616B.1.617.20.00006
ORF3a196G196DgGAgAT1515All0.000003
ORF3a196G196FGGATTT1515All0.000003
ORF3a196G196VgGagTa1515AY.340.001454
ORF3a196G196GggAggG715B.10.000064
ORF3a196G196GggAggT615B.10.000055
ORF3a196G196GggAggC215B.10.000018
ORF3a196G196KGGaAAa1414B.1.1.70.000013
ORF3a196G196FGGATTT1414B.1.1.70.000013
ORF3a196G196NGGAAAT1313All0.000002
ORF3a196G196VgGagTa1313AY.1030.000081
ORF3a196G196GggAggG1313B.1.1.4461
ORF3a196G196DgGAgAT1313B.1.1.70.000012
ORF3a196G196GggAggC1313B.40.028698
ORF3a196G196RGgaAga1212AY.440.000073
ORF3a196G196NGGAAAT1111B.1.1.70.00001
ORF3a196G196GggAggG1010B.1.5960.000871
ORF3a196G196GggAggG99AY.1160.002581
ORF3a196G196GggAggT79B.1.10.000127
ORF3a196G196GggAggC19B.1.10.000018
ORF3a196G196GggAggG19B.1.10.000018
ORF3a196G196RGgaAga88AY.390.000198
ORF3a196G196EgGagAa88AY.40.000012
ORF3a196G196RGgaAga88AY.430.000035
ORF3a196G196EgGagAa88AY.430.000035
ORF3a196G196GggAggT58AY.440.00003
ORF3a196G196GggAggG38AY.440.000018
ORF3a196G196VgGagTa88B.1.1.5190.000318
ORF3a196G196RGgaAga88B.1.20.00007
ORF3a196G196YGGATAT77All0.000001
ORF3a196G196delGGA---77B.1.1.70.000006
ORF3a196G196RGgaAga77B.1.177.210.000535
ORF3a196G196RGgaAga77B.1.4290.000165
ORF3a196G196VgGagTa57P.10.000079
ORF3a196G196VgGAgTT27P.10.000032
ORF3a196G196VgGagTa66AY.750.000336
ORF3a196G196VgGagTa66B.10.000055
ORF3a196G196XGgaTga66B.10.000055
ORF3a196G196YGGATAT66B.1.1.70.000005
ORF3a196G196GggAggT36P.10.000047
ORF3a196G196GggAggG26P.10.000032
ORF3a196G196GggAggC16P.10.000016
ORF3a196G196GggAggG66P.1.150.001394
ORF3a196G196EgGagAa55AY.1070.00233
ORF3a196G196VgGagTa55AY.390.000124
ORF3a196G196GggAggG25AY.430.000009
ORF3a196G196GggAggT25AY.430.000009
ORF3a196G196GggAggC15AY.430.000004
ORF3a196G196EgGagAa55B.10.000046
ORF3a196G196del1ggAgg-35B.1.1.70.000003
ORF3a196G196del1Gga-ga25B.1.1.70.000002
ORF3a196G196VgGagTa55B.1.20.000044
ORF3a196G196GggAggC55B.1.6210.000443
ORF3a196G196VgGagTa44A0.001548
ORF3a196G196RGgaAga44AY.1030.000025
ORF3a196G196VgGagTa44AY.1190.000141
ORF3a196G196GggAggG44AY.200.000155
ORF3a196G196EgGagAa44AY.250.000024
ORF3a196G196GggAggG34AY.330.0002
ORF3a196G196GggAggT14AY.330.000067
ORF3a196G196GggAggG44AY.540.000381
ORF3a196G196VgGagTa44B0.000511
ORF3a196G196VgGagTa44B.1.10.000073
ORF3a196G196VgGagTa44B.1.177.40.000844
ORF3a196G196RGgaAga44B.1.617.20.000015
ORF3a196G196del2gGAg--23All0
ORF3a196G196del2GGA--N13All0
ORF3a196G196EgGagAa33AY.10.001187
ORF3a196G196VgGagTa33AY.1020.00008
ORF3a196G196LGGaTTa33AY.1030.000019
ORF3a196G196EgGagAa33AY.1030.000019
ORF3a196G196VgGagTa33AY.1160.00086
ORF3a196G196EgGagAa33AY.290.000047
ORF3a196G196GggAggC33AY.39.10.000119
ORF3a196G196VgGagTa33AY.39.10.000119
ORF3a196G196GggAggG33AY.4.2.10.000447
ORF3a196G196VgGagTa33AY.4.40.001227
ORF3a196G196VgGagTa33AY.430.000013
ORF3a196G196EgGagAa33AY.440.000018
ORF3a196G196RGgaAga33AY.620.001307
ORF3a196G196RGgaAga33B.10.000027
ORF3a196G196RGgaAga33B.1.1600.000094
ORF3a196G196GggAggC33B.1.160.280.008772
ORF3a196G196VgGagTa33B.1.2390.003663
ORF3a196G196del1ggAgg-33B.1.2580.0002
ORF3a196G196VgGagTa33B.1.4270.000151
ORF3a196G196VgGagTa33B.1.4290.000071
ORF3a196G196delGGA---33B.1.617.20.000011
ORF3a196G196GggAggG33C.370.000348
ORF3a196G196GggAggG33P.1.140.000143
ORF3a196G196del1GgANg-220.111111
ORF3a196G196EgGAgAG220.111111
ORF3a196G196delGGA---22A.2.50.000998
ORF3a196G196VgGagTa22A.30.004193
ORF3a196G196EgGagAa22AY.1000.000092
ORF3a196G196VgGagTa22AY.1180.000125
ORF3a196G196GggAggG22AY.1190.000071
ORF3a196G196GggAggT12AY.1200.000037
ORF3a196G196GggAggG12AY.1200.000037
ORF3a196G196RGgaAga22AY.240.000862
ORF3a196G196RGgaAga22AY.290.000032
ORF3a196G196GggAggT22AY.30.00002
ORF3a196G196RGgaAga22AY.340.000194
ORF3a196G196delGGA---22AY.40.000003
ORF3a196G196RGgaAga22AY.420.00008
ORF3a196G196delGGA---22AY.430.000009
ORF3a196G196del1Gga-ga22AY.440.000012
ORF3a196G196VgGagTa22AY.450.000243
ORF3a196G196GggAggG22AY.50.000041
ORF3a196G196EgGagAa22AY.50.000041
ORF3a196G196GggAggT22AY.690.000373
ORF3a196G196VgGagTa22AY.70.000392
ORF3a196G196GggAggG22AY.9.20.000073
ORF3a196G196GggAggT22AY.980.000158
ORF3a196G196EgGagAa22B.1.1.1920.004619
ORF3a196G196GggAggC22B.1.1.2140.000111
ORF3a196G196RGgaAga22B.1.1.3060.000877
ORF3a196G196EgGagAa22B.1.1.3440.021505
ORF3a196G196GggAggT22B.1.1.3690.000892
ORF3a196G196del2gGAg--22B.1.1.70.000002
ORF3a196G196GggAggG22B.1.1.700.000682
ORF3a196G196EgGagAa22B.1.1600.000062
ORF3a196G196delGGA---22B.1.1770.000026
ORF3a196G196VgGagTa22B.1.177.210.000153
ORF3a196G196delGGA---22B.1.20.000018
ORF3a196G196EgGagAa22B.1.20.000018
ORF3a196G196GggAggT22B.1.2580.000133
ORF3a196G196GggAggG22B.1.360.000292
ORF3a196G196VgGagTa22B.1.5240.002813
ORF3a196G196GggAggG22B.1.564.10.003155
ORF3a196G196GggAggG22B.1.617.30.00597
ORF3a196G196VgGagTa22B.1.6210.000177
ORF3a196G196delGGA---22C.350.001548
ORF3a196G196GggAggT22C.36.30.001134
ORF3a196G196VgGagTa22C.370.000232
ORF3a196G196EgGagAa22N.50.003534
ORF3a196G196SGgAAgT22P.10.000032
ORF3a196G196IGGAATT12P.10.000016
ORF3a196G196IGGaATa12P.10.000016
ORF3a196G196EgGagAa22P.1.140.000096
ORF3a196G196GggAggC22Q.10.000253
ORF3a196G196del1Gga-ga11A0.000387
ORF3a196G196RGgaAga11A0.000387
ORF3a196G196EgGagAa11A.2.50.000499
ORF3a196G196VgGagTa11A.50.001923
ORF3a196G196WGgATgG11All0
ORF3a196G196AgGagCa11All0
ORF3a196G196GggAggG11AU.30.00211
ORF3a196G196VgGagTa11AY.10.000396
ORF3a196G196GggAggT11AY.1020.000027
ORF3a196G196EgGagAa11AY.1020.000027
ORF3a196G196XGgaTga11AY.1030.000006
ORF3a196G196GggAggG11AY.1080.001103
ORF3a196G196GggAggG11AY.1150.005208
ORF3a196G196RGgaAga11AY.1160.000287
ORF3a196G196delGGA---11AY.1200.000037
ORF3a196G196RGgaAga11AY.130.000161
ORF3a196G196GggAggC11AY.140.000088
ORF3a196G196GggAggC11AY.260.000028
ORF3a196G196EgGagAa11AY.30.00001
ORF3a196G196VgGagTa11AY.30.00001
ORF3a196G196del1Gga-ga11AY.30.00001
ORF3a196G196GggAggT11AY.3.10.000085
ORF3a196G196AgGagCa11AY.300.000396
ORF3a196G196GggAggT11AY.320.000532
ORF3a196G196GggAggG11AY.340.000097
ORF3a196G196GggAggG11AY.390.000025
ORF3a196G196del1Gga-ga11AY.40.000002
ORF3a196G196LGGaTTa11AY.40.000002
ORF3a196G196XGgaTga11AY.40.000002
ORF3a196G196RGgaAga11AY.4.40.000409
ORF3a196G196VgGagTa11AY.4.50.000107
ORF3a196G196GggAggT11AY.420.00004
ORF3a196G196LGGaTTa11AY.420.00004
ORF3a196G196XGgaTga11AY.440.000006
ORF3a196G196CGgATgT11AY.440.000006
ORF3a196G196delGGA---11AY.460.000104
ORF3a196G196RGgaAga11AY.530.000288
ORF3a196G196GggAggG11AY.550.000917
ORF3a196G196VgGagTa11AY.550.000917
ORF3a196G196EgGagAa11AY.60.000041
ORF3a196G196RGgaAga11AY.610.000105
ORF3a196G196EgGagAa11AY.650.000533
ORF3a196G196delGGA---11AY.680.000274
ORF3a196G196delGGA---11AY.7.20.000559
ORF3a196G196delGGA---11AY.90.000068
ORF3a196G196del1Gga-ga11AY.9.20.000037
ORF3a196G196VgGagTa11AY.9.20.000037
ORF3a196G196VgGagTa11AY.920.000287
ORF3a196G196GggAggC11AY.920.000287
ORF3a196G196RGgaAga11AY.980.000079
ORF3a196G196EgGagAa11AY.980.000079
ORF3a196G196SGgAAgT11B.10.000009
ORF3a196G196DgGAgAT11B.10.000009
ORF3a196G196YGGATAT11B.10.000009
ORF3a196G196NGGAAAT11B.10.000009
ORF3a196G196KGGaAAa11B.10.000009
ORF3a196G196delGGA---11B.10.000009
ORF3a196G196LGGaTTa11B.1.1.10.000327
ORF3a196G196RGgaAga11B.1.1.1410.002012
ORF3a196G196VgGagTa11B.1.1.2070.001182
ORF3a196G196RGgaAga11B.1.1.2770.000759
ORF3a196G196GggAggG11B.1.1.3170.000412
ORF3a196G196VgGagTa11B.1.1.3180.000302
ORF3a196G196GggAggC11B.1.1.390.00051
ORF3a196G196del1ggAgg-11B.1.1.390.00051
ORF3a196G196VgGagTa11B.1.1.440.00241
ORF3a196G196XGgaTga11B.1.1.4640.001473
ORF3a196G196GggAggT11B.1.1.500.000679
ORF3a196G196XGgaTga11B.1.1.700.000341
ORF3a196G196RGgaAga11B.1.1.870.066667
ORF3a196G196VgGagTa11B.1.1390.000733
ORF3a196G196VgGagTa11B.1.1570.002985
ORF3a196G196GggAggT11B.1.1600.000031
ORF3a196G196RGgaAga11B.1.1770.000013
ORF3a196G196VgGagTa11B.1.177.150.000631
ORF3a196G196RGgaAga11B.1.177.250.014925
ORF3a196G196GggAggG11B.1.177.330.001645
ORF3a196G196delGGA---11B.1.177.730.000566
ORF3a196G196VgGagTa11B.1.177.80.000752
ORF3a196G196del2GGA--N11B.1.177.810.000189
ORF3a196G196EgGagAa11B.1.1870.033333
ORF3a196G196XGgaTga11B.1.20.000009
ORF3a196G196delGGA---11B.1.2210.000071
ORF3a196G196RGgaAga11B.1.2210.000071
ORF3a196G196XGgaTga11B.1.221.30.000833
ORF3a196G196RGgaAga11B.1.2220.001692
ORF3a196G196VgGagTa11B.1.2340.000132
ORF3a196G196VgGagTa11B.1.2430.00007
ORF3a196G196EgGagAa11B.1.2580.000067
ORF3a196G196GggAggT11B.1.258.20.004505
ORF3a196G196EgGagAa11B.1.3510.00003
ORF3a196G196VgGagTa11B.1.3510.00003
ORF3a196G196GggAggG11B.1.351.20.000303
ORF3a196G196VgGagTa11B.1.351.20.000303
ORF3a196G196RGgaCga11B.1.360.000146
ORF3a196G196EgGagAa11B.1.360.000146
ORF3a196G196EgGagAa11B.1.36.10.00114
ORF3a196G196EgGagAa11B.1.3770.004566
ORF3a196G196RGgaAga11B.1.3910.001127
ORF3a196G196RGgaAga11B.1.3990.001934
ORF3a196G196GggAggG11B.1.4090.000781
ORF3a196G196RGgaAga11B.1.4270.00005
ORF3a196G196EgGagAa11B.1.4270.00005
ORF3a196G196VgGagTa11B.1.4280.00102
ORF3a196G196VgGagTa11B.1.4530.003236
ORF3a196G196EgGagAa11B.1.4590.004082
ORF3a196G196XGgaTga11B.1.4700.001404
ORF3a196G196VgGagTa11B.1.5210.004975
ORF3a196G196RGgaAga11B.1.5260.000024
ORF3a196G196GggAggT11B.1.5260.000024
ORF3a196G196VgGagTa11B.1.5610.000397
ORF3a196G196delGGA---11B.1.5770.000687
ORF3a196G196VgGagTa11B.1.5960.000087
ORF3a196G196WGgATgG11B.1.617.20.000004
ORF3a196G196VgGagTa11B.1.6270.00202
ORF3a196G196GggAggG11B.1.6280.000352
ORF3a196G196VgGagTa11B.400.000364
ORF3a196G196VgGagTa11B.520.010101
ORF3a196G196GggAggG11C.37.10.002618
ORF3a196G196VgGagTa11D.20.000075
ORF3a196G196GggAggC11N.50.001767
ORF3a196G196KGGaAAa11P.10.000016
ORF3a196G196NGGAAAT11P.10.000016
ORF3a196G196DgGAgAT11P.10.000016
ORF3a196G196CGgATgT11P.10.000016
ORF3a196G196FGGATTT11P.10.000016
ORF3a196G196XGgaTga11P.10.000016
ORF3a196G196LGGaTTa11P.10.000016
ORF3a196G196EgGagAa11P.1.10.000318
ORF3a196G196RGgaAga11P.1.70.000319
ORF3a196G196delGGA---11Q.10.000126
ORF3a196G196EgGagAa11Q.80.000165
ORF3a196G196LGGaTTa11Q.80.000165