CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 19 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a19E19DnonsyngaAgaT5184440.85714325447-25449

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a19E19DgaAgaT444518All0.000085
ORF3a19E19DgaAgaT301301AY.1180.018857
ORF3a19E19DgaAgaT4853B.1.617.20.000181
ORF3a19E19DgaAgaT1126AY.40.000017
ORF3a19E19DgaAgaT2125AY.430.000093
ORF3a19E19DgaAgaT811AY.440.000049
ORF3a19E19DgaAgaT710AY.30.00007
ORF3a19E19DgaAgaT510B.1.1.70.000004
ORF3a19E19DgaAgaT79B.1.10.000127
ORF3a19E19DgaAgaT68B.10.000055
ORF3a19E19DgaAgaT26AY.390.000049
ORF3a19E19DgaAgaT15AY.250.000006
ORF3a19E19DgaAgaT34AY.1020.00008
ORF3a19E19DgaAgaT44AY.470.000124
ORF3a19E19DgaAgaT22AY.330.000134
ORF3a19E19DgaAgaT12AY.4.20.000022
ORF3a19E19DgaAgaT22AY.4.40.000818
ORF3a19E19DgaAgaT12B.1.1770.000013
ORF3a19E19DgaAgaT22B.1.5090.001732
ORF3a19E19DgaAgaT22C.370.000232
ORF3a19E19DgaAgaT22P.30.00319
ORF3a19E19DgaAgaT11A.20.000662
ORF3a19E19DgaAgaT11A.2.5.30.010309
ORF3a19E19DgaAgaT11AY.1160.000287
ORF3a19E19DgaAgaT11AY.590.00053
ORF3a19E19DgaAgaT11B.1.177.40.000211
ORF3a19E19DgaAgaT11B.1.20.000009
ORF3a19E19DgaAgaT11B.1.2210.000071
ORF3a19E19DgaAgaT11C.300.001727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.