CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 186

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a186I186VnonsynAttGtt448448125948-25950
ORF3a186I186TnonsynaTtaCt2902890.99655225948-25950
ORF3a186I186TnonsynaTTaCC29010.0034482825948-25950
ORF3a186I186FnonsynAttTtt269269125948-25950
ORF3a186I186IsynatTatC1451260.86896625948-25950
ORF3a186I186IsynatTatA145190.13103425948-25950
ORF3a186I186LnonsynAttCtt6666125948-25950
ORF3a186I186deldelATT---3434125948-25950
ORF3a186I186SnonsynaTtaGt3232125948-25950
ORF3a186I186MnonsynatTatG33125948-25950
ORF3a186I186del1delaTta-t320.66666725948-25950
ORF3a186I186del1delatTat-310.33333325948-25950
ORF3a186I186WnonsynATTTGG22125948-25950
ORF3a186I186NnonsynaTtaAt11125948-25950
ORF3a186I186DnonsynATtGAt11125948-25950
ORF3a186I186RnonsynaTTaGA11125948-25950

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a186I186VAttGtt448448All0.000086
ORF3a186I186TaTtaCt289290All0.000055
ORF3a186I186TaTTaCC1290All0
ORF3a186I186FAttTtt269269All0.000051
ORF3a186I186FAttTtt180180AY.1180.011277
ORF3a186I186IatTatC126145All0.000024
ORF3a186I186IatTatA19145All0.000004
ORF3a186I186VAttGtt8585B.1.4290.002
ORF3a186I186VAttGtt6969AY.40.000107
ORF3a186I186LAttCtt6666All0.000013
ORF3a186I186VAttGtt5454C.271
ORF3a186I186TaTtaCt5151B.1.1.70.000046
ORF3a186I186VAttGtt4444B.1.1.70.000039
ORF3a186I186FAttTtt3939B.1.20.000343
ORF3a186I186TaTtaCt3838B.1.617.20.000143
ORF3a186I186delATT---3434All0.000007
ORF3a186I186SaTtaGt3232All0.000006
ORF3a186I186IatTatC2929B.1.1.70.000026
ORF3a186I186LAttCtt2323B.1.1.5190.000913
ORF3a186I186VAttGtt2020AY.1000.00092
ORF3a186I186IatTatC1920B.10.000174
ORF3a186I186IatTatA120B.10.000009
ORF3a186I186VAttGtt1919AY.260.000538
ORF3a186I186VAttGtt1818B.1.20.000158
ORF3a186I186TaTtaCt1717AY.40.000026
ORF3a186I186VAttGtt1515AY.430.000066
ORF3a186I186IatTatC1515AY.690.0028
ORF3a186I186SaTtaGt1515B.1.1.70.000013
ORF3a186I186TaTtaCt1313B.1.1.3390.136842
ORF3a186I186TaTtaCt1212AY.1020.000318
ORF3a186I186VAttGtt1212B.1.1600.000374
ORF3a186I186VAttGtt1212B.1.617.20.000045
ORF3a186I186VAttGtt1111AY.30.000109
ORF3a186I186IatTatC1111B.1.4290.000259
ORF3a186I186IatTatC910AY.250.000054
ORF3a186I186IatTatA110AY.250.000006
ORF3a186I186TaTtaCt1010AY.30.000099
ORF3a186I186TaTtaCt1010AY.430.000044
ORF3a186I186VAttGtt1010B.1.5250.001132
ORF3a186I186FAttTtt99AY.430.00004
ORF3a186I186TaTtaCt99B.1.5960.000784
ORF3a186I186TaTtaCt88B.1.177.650.005323
ORF3a186I186TaTtaCt88P.10.000126
ORF3a186I186TaTtaCt77AY.9.10.000586
ORF3a186I186FAttTtt77B.1.1.70.000006
ORF3a186I186delATT---77B.1.1.70.000006
ORF3a186I186TaTtaCt66AY.200.000233
ORF3a186I186TaTtaCt66AY.610.000629
ORF3a186I186FAttTtt66B.10.000055
ORF3a186I186LAttCtt66B.1.1.70.000005
ORF3a186I186VAttGtt66P.10.000095
ORF3a186I186TaTtaCt55AY.250.00003
ORF3a186I186VAttGtt55AY.250.00003
ORF3a186I186TaTtaCt55AY.360.000741
ORF3a186I186FAttTtt55AY.40.000008
ORF3a186I186IatTatC55AY.4.20.000108
ORF3a186I186delATT---55AY.430.000022
ORF3a186I186VAttGtt55AY.440.00003
ORF3a186I186TaTtaCt55B.1.1770.000066
ORF3a186I186VAttGtt55B.1.2410.004058
ORF3a186I186LAttCtt55B.1.575.10.012195
ORF3a186I186TaTtaCt44AY.1030.000025
ORF3a186I186LAttCtt44AY.1030.000025
ORF3a186I186IatTatA44AY.200.000155
ORF3a186I186VAttGtt44AY.200.000155
ORF3a186I186TaTtaCt44AY.330.000267
ORF3a186I186TaTtaCt44AY.390.000099
ORF3a186I186IatTatC44AY.40.000006
ORF3a186I186TaTtaCt44AY.4.20.000087
ORF3a186I186IatTatA34AY.440.000018
ORF3a186I186IatTatC14AY.440.000006
ORF3a186I186LAttCtt44AY.450.000487
ORF3a186I186VAttGtt44B.10.000037
ORF3a186I186MatTatG33All0.000001
ORF3a186I186del1aTta-t23All0
ORF3a186I186del1atTat-13All0
ORF3a186I186VAttGtt33AY.10.001187
ORF3a186I186TaTtaCt33AY.1000.000138
ORF3a186I186VAttGtt33AY.290.000047
ORF3a186I186TaTtaCt33AY.4.2.10.000447
ORF3a186I186FAttTtt33AY.440.000018
ORF3a186I186TaTtaCt33AY.46.10.00308
ORF3a186I186TaTtaCt33AY.470.000093
ORF3a186I186TaTtaCt33AY.50.000062
ORF3a186I186VAttGtt33AY.50.000062
ORF3a186I186FAttTtt33AY.770.003382
ORF3a186I186VAttGtt33AY.99.20.000276
ORF3a186I186IatTatC23B.1.10.000036
ORF3a186I186IatTatA13B.1.10.000018
ORF3a186I186TaTtaCt33B.1.1.2220.000612
ORF3a186I186IatTatC33B.1.1.3480.002389
ORF3a186I186VAttGtt33B.1.1770.00004
ORF3a186I186delATT---33B.1.1770.00004
ORF3a186I186TaTtaCt33B.1.2210.000213
ORF3a186I186TaTtaCt33B.1.3510.000089
ORF3a186I186VAttGtt33B.1.4270.000151
ORF3a186I186TaTtaCt33B.1.4280.003061
ORF3a186I186FAttTtt33B.1.617.20.000011
ORF3a186I186LAttCtt33B.1.617.20.000011
ORF3a186I186delATT---33B.1.617.20.000011
ORF3a186I186IatTatA33C.36.30.001702
ORF3a186I186IatTatC33D.20.000225
ORF3a186I186IatTatC23P.10.000032
ORF3a186I186IatTatA13P.10.000016
ORF3a186I186IatTatC33P.1.140.000143
ORF3a186I186WATTTGG220.111111
ORF3a186I186WATTTGG22All0
ORF3a186I186IatTatC22AY.1030.000012
ORF3a186I186TaTtaCt22AY.1190.000071
ORF3a186I186FAttTtt22AY.1190.000071
ORF3a186I186SaTtaGt22AY.250.000012
ORF3a186I186del1atTat-12AY.250.000006
ORF3a186I186del1aTta-t12AY.250.000006
ORF3a186I186delATT---22AY.330.000134
ORF3a186I186SaTtaGt22AY.390.000049
ORF3a186I186LAttCtt22AY.40.000003
ORF3a186I186IatTatC22AY.430.000009
ORF3a186I186TaTtaCt22AY.440.000012
ORF3a186I186LAttCtt22AY.440.000012
ORF3a186I186VAttGtt22AY.46.40.000329
ORF3a186I186VAttGtt22AY.60.000082
ORF3a186I186LAttCtt22AY.610.00021
ORF3a186I186VAttGtt22AY.90.000135
ORF3a186I186delATT---22B.10.000018
ORF3a186I186TaTtaCt22B.1.10.000036
ORF3a186I186TaTTaCC12B.1.1.5190.00004
ORF3a186I186TaTtaCt12B.1.1.5190.00004
ORF3a186I186LAttCtt22B.1.177.210.000153
ORF3a186I186VAttGtt22B.1.177.810.000379
ORF3a186I186delATT---22B.1.20.000018
ORF3a186I186IatTatA12B.1.20.000009
ORF3a186I186IatTatC12B.1.20.000009
ORF3a186I186SaTtaGt22B.1.3510.000059
ORF3a186I186TaTtaCt22B.1.36.170.000988
ORF3a186I186TaTtaCt22B.1.5240.002813
ORF3a186I186SaTtaGt22B.1.617.20.000008
ORF3a186I186VAttGtt22B.1.6370.000146
ORF3a186I186IatTatA22C.360.001821
ORF3a186I186LAttCtt22C.370.000232
ORF3a186I186VAttGtt22P.1.140.000096
ORF3a186I186VAttGtt22R.10.00018
ORF3a186I186LAttCtt11A0.000387
ORF3a186I186NaTtaAt11A.10.000282
ORF3a186I186TaTtaCt11A.2.50.000499
ORF3a186I186IatTatC11A.50.001923
ORF3a186I186TaTtaCt11AD.20.000219
ORF3a186I186NaTtaAt11All0
ORF3a186I186RaTTaGA11All0
ORF3a186I186DATtGAt11All0
ORF3a186I186TaTtaCt11AY.10.000396
ORF3a186I186FAttTtt11AY.1000.000046
ORF3a186I186LAttCtt11AY.1020.000027
ORF3a186I186VAttGtt11AY.1020.000027
ORF3a186I186FAttTtt11AY.1030.000006
ORF3a186I186IatTatC11AY.1130.000142
ORF3a186I186VAttGtt11AY.1140.000231
ORF3a186I186VAttGtt11AY.1170.000085
ORF3a186I186TaTtaCt11AY.1170.000085
ORF3a186I186VAttGtt11AY.1200.000037
ORF3a186I186TaTtaCt11AY.1200.000037
ORF3a186I186delATT---11AY.1200.000037
ORF3a186I186FAttTtt11AY.140.000088
ORF3a186I186IatTatA11AY.230.00007
ORF3a186I186TaTtaCt11AY.230.00007
ORF3a186I186RaTTaGA11AY.240.000431
ORF3a186I186FAttTtt11AY.250.000006
ORF3a186I186LAttCtt11AY.260.000028
ORF3a186I186TaTtaCt11AY.290.000016
ORF3a186I186IatTatC11AY.30.00001
ORF3a186I186FAttTtt11AY.30.00001
ORF3a186I186SaTtaGt11AY.30.00001
ORF3a186I186LAttCtt11AY.30.00001
ORF3a186I186VAttGtt11AY.3.10.000085
ORF3a186I186TaTtaCt11AY.350.000233
ORF3a186I186TaTtaCt11AY.39.10.00004
ORF3a186I186delATT---11AY.40.000002
ORF3a186I186IatTatC11AY.4.50.000107
ORF3a186I186TaTtaCt11AY.450.000122
ORF3a186I186TaTtaCt11AY.460.000104
ORF3a186I186VAttGtt11AY.460.000104
ORF3a186I186FAttTtt11AY.46.60.000072
ORF3a186I186SaTtaGt11AY.50.000021
ORF3a186I186LAttCtt11AY.5.30.000337
ORF3a186I186LAttCtt11AY.580.000907
ORF3a186I186delATT---11AY.680.000274
ORF3a186I186FAttTtt11AY.680.000274
ORF3a186I186LAttCtt11AY.680.000274
ORF3a186I186MatTatG11AY.680.000274
ORF3a186I186TaTtaCt11AY.690.000187
ORF3a186I186delATT---11AY.7.20.000559
ORF3a186I186VAttGtt11AY.750.000056
ORF3a186I186VAttGtt11AY.840.000437
ORF3a186I186delATT---11AY.90.000068
ORF3a186I186SaTtaGt11AY.9.20.000037
ORF3a186I186LAttCtt11AY.98.10.000048
ORF3a186I186TaTtaCt11AY.99.20.000092
ORF3a186I186SaTtaGt11B0.000128
ORF3a186I186TaTtaCt11B0.000128
ORF3a186I186DATtGAt11B.10.000009
ORF3a186I186SaTtaGt11B.10.000009
ORF3a186I186VAttGtt11B.1.10.000018
ORF3a186I186SaTtaGt11B.1.10.000018
ORF3a186I186IatTatC11B.1.1.1630.007634
ORF3a186I186LAttCtt11B.1.1.280.000311
ORF3a186I186SaTtaGt11B.1.1.2800.003086
ORF3a186I186TaTtaCt11B.1.1.370.000193
ORF3a186I186FAttTtt11B.1.1.3910.008547
ORF3a186I186IatTatC11B.1.1.4340.000349
ORF3a186I186delATT---11B.1.1.5190.00004
ORF3a186I186IatTatC11B.1.1.5190.00004
ORF3a186I186IatTatC11B.1.1.5250.005464
ORF3a186I186TaTtaCt11B.1.1.630.000386
ORF3a186I186del1aTta-t11B.1.1.70.000001
ORF3a186I186MatTatG11B.1.1570.002985
ORF3a186I186FAttTtt11B.1.1600.000031
ORF3a186I186IatTatC11B.1.1600.000031
ORF3a186I186delATT---11B.1.1600.000031
ORF3a186I186TaTtaCt11B.1.177.120.000152
ORF3a186I186FAttTtt11B.1.177.150.000631
ORF3a186I186IatTatA11B.1.177.170.000821
ORF3a186I186delATT---11B.1.177.510.004566
ORF3a186I186VAttGtt11B.1.177.70.000165
ORF3a186I186MatTatG11B.1.20.000009
ORF3a186I186TaTtaCt11B.1.20.000009
ORF3a186I186LAttCtt11B.1.20.000009
ORF3a186I186VAttGtt11B.1.2050.02381
ORF3a186I186TaTtaCt11B.1.2390.001221
ORF3a186I186SaTtaGt11B.1.2430.00007
ORF3a186I186TaTtaCt11B.1.2430.00007
ORF3a186I186FAttTtt11B.1.258.170.000104
ORF3a186I186VAttGtt11B.1.3080.034483
ORF3a186I186IatTatC11B.1.3510.00003
ORF3a186I186VAttGtt11B.1.360.000146
ORF3a186I186delATT---11B.1.36.10.00114
ORF3a186I186IatTatC11B.1.4620.007246
ORF3a186I186IatTatC11B.1.466.20.000391
ORF3a186I186TaTtaCt11B.1.5260.000024
ORF3a186I186TaTtaCt11B.1.5320.006211
ORF3a186I186TaTtaCt11B.1.5590.025
ORF3a186I186LAttCtt11B.1.5680.001111
ORF3a186I186FAttTtt11B.1.5960.000087
ORF3a186I186SaTtaGt11B.1.6090.000479
ORF3a186I186IatTatC11B.1.617.10.000129
ORF3a186I186IatTatC11B.1.617.20.000004
ORF3a186I186VAttGtt11B.1.6200.000946
ORF3a186I186VAttGtt11D.20.000075
ORF3a186I186VAttGtt11N.40.004255
ORF3a186I186VAttGtt11P.1.160.000374
ORF3a186I186TaTtaCt11P.1.70.000319
ORF3a186I186delATT---11Q.10.000126
ORF3a186I186TaTtaCt11Q.80.000165
ORF3a186I186IatTatC11Q.80.000165
ORF3a186I186VAttGtt11Q.80.000165