CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 185 | Q185H | nonsyn | caG | caC | 22977 | 4817 | 0.209644 | 25945-25947 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 185 | Q185H | caG | caC | 4817 | 22977 | All | 0.000921 |
ORF3a | 185 | Q185H | caG | caC | 18 | 9600 | B.1.258.17 | 0.001871 |
ORF3a | 185 | Q185H | caG | caC | 2884 | 3682 | AY.4 | 0.004489 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2275 | B.1.1.176 | 0.000439 |
ORF3a | 185 | Q185H | caG | caC | 280 | 783 | B.1.1.7 | 0.000251 |
ORF3a | 185 | Q185H | caG | caC | 3 | 430 | B.1.1.214 | 0.000166 |
ORF3a | 185 | Q185H | caG | caC | 399 | 399 | B.1.503 | 0.992537 |
ORF3a | 185 | Q185H | caG | caC | 174 | 334 | B.1.2 | 0.001532 |
ORF3a | 185 | Q185H | caG | caC | 134 | 331 | B.1.617.2 | 0.000505 |
ORF3a | 185 | Q185H | caG | caC | 2 | 288 | AY.26 | 0.000057 |
ORF3a | 185 | Q185H | caG | caC | 86 | 268 | AY.43 | 0.000381 |
ORF3a | 185 | Q185H | caG | caC | 14 | 266 | B.1.177 | 0.000184 |
ORF3a | 185 | Q185H | caG | caC | 10 | 248 | B.1 | 0.000092 |
ORF3a | 185 | Q185H | caG | caC | 51 | 187 | AY.44 | 0.00031 |
ORF3a | 185 | Q185H | caG | caC | 67 | 153 | AY.103 | 0.000416 |
ORF3a | 185 | Q185H | caG | caC | 38 | 130 | AY.25 | 0.000229 |
ORF3a | 185 | Q185H | caG | caC | 10 | 98 | B.1.1 | 0.000181 |
ORF3a | 185 | Q185H | caG | caC | 2 | 92 | B.1.351 | 0.000059 |
ORF3a | 185 | Q185H | caG | caC | 92 | 92 | B.1.36.2 | 0.989247 |
ORF3a | 185 | Q185H | caG | caC | 7 | 88 | AY.6 | 0.000288 |
ORF3a | 185 | Q185H | caG | caC | 34 | 82 | P.1 | 0.000536 |
ORF3a | 185 | Q185H | caG | caC | 69 | 69 | AY.36 | 0.010227 |
ORF3a | 185 | Q185H | caG | caC | 1 | 67 | AY.75 | 0.000056 |
ORF3a | 185 | Q185H | caG | caC | 8 | 65 | B.1.427 | 0.000404 |
ORF3a | 185 | Q185H | caG | caC | 46 | 63 | B.1.429 | 0.001082 |
ORF3a | 185 | Q185H | caG | caC | 2 | 59 | AY.34 | 0.000194 |
ORF3a | 185 | Q185H | caG | caC | 23 | 53 | AY.39 | 0.000568 |
ORF3a | 185 | Q185H | caG | caC | 1 | 46 | B.1.36 | 0.000146 |
ORF3a | 185 | Q185H | caG | caC | 24 | 45 | AY.119 | 0.000847 |
ORF3a | 185 | Q185H | caG | caC | 7 | 40 | AY.102 | 0.000186 |
ORF3a | 185 | Q185H | caG | caC | 28 | 40 | B.1.177.7 | 0.004616 |
ORF3a | 185 | Q185H | caG | caC | 7 | 32 | AY.3 | 0.00007 |
ORF3a | 185 | Q185H | caG | caC | 1 | 30 | B.1.609 | 0.000479 |
ORF3a | 185 | Q185H | caG | caC | 7 | 28 | B.1.526 | 0.000165 |
ORF3a | 185 | Q185H | caG | caC | 26 | 27 | AY.101 | 0.012751 |
ORF3a | 185 | Q185H | caG | caC | 2 | 27 | AY.75.1 | 0.000361 |
ORF3a | 185 | Q185H | caG | caC | 1 | 26 | B.1.160 | 0.000031 |
ORF3a | 185 | Q185H | caG | caC | 9 | 25 | AY.100 | 0.000414 |
ORF3a | 185 | Q185H | caG | caC | 1 | 25 | C.35 | 0.000774 |
ORF3a | 185 | Q185H | caG | caC | 6 | 24 | AY.5 | 0.000124 |
ORF3a | 185 | Q185H | caG | caC | 17 | 24 | B.1.1.222 | 0.003468 |
ORF3a | 185 | Q185H | caG | caC | 2 | 22 | AY.79 | 0.002421 |
ORF3a | 185 | Q185H | caG | caC | 5 | 21 | AY.23 | 0.000349 |
ORF3a | 185 | Q185H | caG | caC | 2 | 20 | AY.33 | 0.000134 |
ORF3a | 185 | Q185H | caG | caC | 3 | 20 | AY.39.1 | 0.000119 |
ORF3a | 185 | Q185H | caG | caC | 18 | 20 | B.1.396 | 0.012703 |
ORF3a | 185 | Q185H | caG | caC | 1 | 19 | AY.9.2 | 0.000037 |
ORF3a | 185 | Q185H | caG | caC | 2 | 19 | B.1.258.24 | 0.021505 |
ORF3a | 185 | Q185H | caG | caC | 10 | 17 | AY.61 | 0.001048 |
ORF3a | 185 | Q185H | caG | caC | 3 | 16 | AY.46.6 | 0.000217 |
ORF3a | 185 | Q185H | caG | caC | 3 | 16 | B | 0.000383 |
ORF3a | 185 | Q185H | caG | caC | 1 | 16 | B.1.1.216 | 0.00089 |
ORF3a | 185 | Q185H | caG | caC | 8 | 14 | AY.4.2 | 0.000174 |
ORF3a | 185 | Q185H | caG | caC | 7 | 14 | AY.42 | 0.000282 |
ORF3a | 185 | Q185H | caG | caC | 3 | 14 | AY.47 | 0.000093 |
ORF3a | 185 | Q185H | caG | caC | 2 | 12 | AY.45 | 0.000243 |
ORF3a | 185 | Q185H | caG | caC | 4 | 11 | AY.98.1 | 0.000194 |
ORF3a | 185 | Q185H | caG | caC | 1 | 11 | B.1.525 | 0.000113 |
ORF3a | 185 | Q185H | caG | caC | 1 | 11 | D.2 | 0.000075 |
ORF3a | 185 | Q185H | caG | caC | 3 | 10 | AY.29 | 0.000047 |
ORF3a | 185 | Q185H | caG | caC | 2 | 10 | AY.46 | 0.000208 |
ORF3a | 185 | Q185H | caG | caC | 1 | 10 | B.1.596 | 0.000087 |
ORF3a | 185 | Q185H | caG | caC | 6 | 9 | AY.20 | 0.000233 |
ORF3a | 185 | Q185H | caG | caC | 3 | 8 | A | 0.001161 |
ORF3a | 185 | Q185H | caG | caC | 2 | 8 | AY.118 | 0.000125 |
ORF3a | 185 | Q185H | caG | caC | 4 | 8 | AY.120 | 0.000149 |
ORF3a | 185 | Q185H | caG | caC | 4 | 8 | AY.99.2 | 0.000369 |
ORF3a | 185 | Q185H | caG | caC | 3 | 8 | B.1.243 | 0.000209 |
ORF3a | 185 | Q185H | caG | caC | 3 | 7 | AY.27 | 0.000194 |
ORF3a | 185 | Q185H | caG | caC | 6 | 7 | B.1.234 | 0.000792 |
ORF3a | 185 | Q185H | caG | caC | 1 | 7 | B.1.621 | 0.000089 |
ORF3a | 185 | Q185H | caG | caC | 5 | 6 | AY.120.2.1 | 0.002491 |
ORF3a | 185 | Q185H | caG | caC | 4 | 6 | B.1.1.297 | 0.008949 |
ORF3a | 185 | Q185H | caG | caC | 1 | 6 | B.1.375 | 0.00082 |
ORF3a | 185 | Q185H | caG | caC | 1 | 6 | B.1.637 | 0.000073 |
ORF3a | 185 | Q185H | caG | caC | 6 | 6 | C.32 | 0.139535 |
ORF3a | 185 | Q185H | caG | caC | 2 | 6 | P.2 | 0.000373 |
ORF3a | 185 | Q185H | caG | caC | 4 | 6 | R.1 | 0.00036 |
ORF3a | 185 | Q185H | caG | caC | 1 | 5 | AY.54 | 0.000095 |
ORF3a | 185 | Q185H | caG | caC | 5 | 5 | B.1.177.16 | 0.003322 |
ORF3a | 185 | Q185H | caG | caC | 4 | 5 | C.37 | 0.000464 |
ORF3a | 185 | Q185H | caG | caC | 3 | 4 | AY.117 | 0.000254 |
ORF3a | 185 | Q185H | caG | caC | 2 | 4 | AY.48 | 0.00093 |
ORF3a | 185 | Q185H | caG | caC | 3 | 4 | AY.70 | 0.000626 |
ORF3a | 185 | Q185H | caG | caC | 3 | 4 | P.1.12 | 0.001452 |
ORF3a | 185 | Q185H | caG | caC | 3 | 3 | AY.30 | 0.001187 |
ORF3a | 185 | Q185H | caG | caC | 2 | 3 | AY.35 | 0.000466 |
ORF3a | 185 | Q185H | caG | caC | 3 | 3 | AY.37 | 0.000948 |
ORF3a | 185 | Q185H | caG | caC | 1 | 3 | AY.9 | 0.000068 |
ORF3a | 185 | Q185H | caG | caC | 3 | 3 | B.1.1.231 | 0.009288 |
ORF3a | 185 | Q185H | caG | caC | 1 | 3 | B.1.369 | 0.000285 |
ORF3a | 185 | Q185H | caG | caC | 1 | 3 | B.1.617.1 | 0.000129 |
ORF3a | 185 | Q185H | caG | caC | 2 | 3 | P.1.14 | 0.000096 |
ORF3a | 185 | Q185H | caG | caC | 2 | 3 | P.1.2 | 0.002312 |
ORF3a | 185 | Q185H | caG | caC | 2 | 3 | Q.4 | 0.00091 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.106 | 0.000335 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.113 | 0.000142 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.59 | 0.00053 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.68 | 0.000274 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.74 | 0.000116 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | AY.84 | 0.000437 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | B.1.1.220 | 0.001859 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.1.279 | 0.002242 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.1.354 | 0.008772 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.1.83 | 0.00542 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.243.2 | 0.028986 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.258.18 | 0.2 |
ORF3a | 185 | Q185H | caG | caC | 1 | 2 | B.1.36.17 | 0.000494 |
ORF3a | 185 | Q185H | caG | caC | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AA.5 | 0.016129 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.210 | 0.005714 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.213 | 0.021739 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.1.447 | 0.035714 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.177.53 | 0.002392 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | C.14 | 0.004329 |
ORF3a | 185 | Q185H | caG | caC | 1 | 1 | L.3 | 0.003546 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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