CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 18 & Codon = ggA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18GsynggTggA4542390.52643225444-25446

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18GggTggA239454All0.000046
ORF3a18G18GggTggA728B.1.1.70.000006
ORF3a18G18GggTggA227B.1.617.20.000008
ORF3a18G18GggTggA2526B.1.1770.000329
ORF3a18G18GggTggA2424B.1.1600.000749
ORF3a18G18GggTggA1717B.1.177.440.008822
ORF3a18G18GggTggA1313B.1.1.390.006626
ORF3a18G18GggTggA1111B.1.2210.000781
ORF3a18G18GggTggA1010B.1.160.160.009294
ORF3a18G18GggTggA79B.10.000064
ORF3a18G18GggTggA99B.1.10.000163
ORF3a18G18GggTggA78B.1.258.170.000728
ORF3a18G18GggTggA77B.1.177.430.01034
ORF3a18G18GggTggA77B.1.2580.000466
ORF3a18G18GggTggA66B.1.160.200.053571
ORF3a18G18GggTggA55B.1.160.110.028571
ORF3a18G18GggTggA55B.1.160.120.032051
ORF3a18G18GggTggA55B.1.160.140.010593
ORF3a18G18GggTggA55B.1.160.150.024752
ORF3a18G18GggTggA55B.1.160.320.021459
ORF3a18G18GggTggA55B.1.177.230.016181
ORF3a18G18GggTggA44B.1.160.290.016878
ORF3a18G18GggTggA44B.1.160.90.028777
ORF3a18G18GggTggA44B.1.36.10.004561
ORF3a18G18GggTggA33B.1.1.5190.000119
ORF3a18G18GggTggA33B.1.160.100.024194
ORF3a18G18GggTggA33B.1.160.300.008929
ORF3a18G18GggTggA220.111111
ORF3a18G18GggTggA22B.1.1.2770.001517
ORF3a18G18GggTggA22B.1.1.700.000682
ORF3a18G18GggTggA22B.1.1580.047619
ORF3a18G18GggTggA22B.1.160.220.013514
ORF3a18G18GggTggA12B.1.177.810.000189
ORF3a18G18GggTggA22B.1.416.10.003125
ORF3a18G18GggTggA22B.1.4690.00722
ORF3a18G18GggTggA11AF.10.037037
ORF3a18G18GggTggA11B0.000128
ORF3a18G18GggTggA11B.1.1.2940.001266
ORF3a18G18GggTggA11B.1.1.370.000193
ORF3a18G18GggTggA11B.1.1.3730.02381
ORF3a18G18GggTggA11B.1.1.4450.037037
ORF3a18G18GggTggA11B.1.1.470.005348
ORF3a18G18GggTggA11B.1.1.580.005376
ORF3a18G18GggTggA11B.1.160.260.002421
ORF3a18G18GggTggA11B.1.160.280.002924
ORF3a18G18GggTggA11B.1.160.310.008065
ORF3a18G18GggTggA11B.1.177.210.000076
ORF3a18G18GggTggA11B.1.177.280.007407
ORF3a18G18GggTggA11B.1.177.510.004566
ORF3a18G18GggTggA11B.1.177.530.002392
ORF3a18G18GggTggA11B.1.177.710.010101
ORF3a18G18GggTggA11B.1.177.860.000183
ORF3a18G18GggTggA11B.1.2360.002053
ORF3a18G18GggTggA11B.1.3670.000792
ORF3a18G18GggTggA11C.160.00106
ORF3a18G18GggTggA11C.36.20.034483

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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