CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 18 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18VnonsyngGtgTt96559655125444-25446

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18VgGtgTt96559655All0.001847
ORF3a18G18VgGtgTt18481848B.1.1.70.001654
ORF3a18G18VgGtgTt17871787AY.7.20.999441
ORF3a18G18VgGtgTt13321332AY.420.053587
ORF3a18G18VgGtgTt888888AY.40.001382
ORF3a18G18VgGtgTt761761B.1.617.20.002865
ORF3a18G18VgGtgTt256256U.30.988417
ORF3a18G18VgGtgTt221221AY.430.000979
ORF3a18G18VgGtgTt206206AY.60.008472
ORF3a18G18VgGtgTt201201AY.480.093488
ORF3a18G18VgGtgTt131131AY.46.40.02155
ORF3a18G18VgGtgTt126126AY.440.000767
ORF3a18G18VgGtgTt102102B.10.000934
ORF3a18G18VgGtgTt9494B.1.3851
ORF3a18G18VgGtgTt8787AY.46.50.017262
ORF3a18G18VgGtgTt8181AY.30.000806
ORF3a18G18VgGtgTt7878AY.1030.000484
ORF3a18G18VgGtgTt7272AY.250.000433
ORF3a18G18VgGtgTt6969AY.360.010227
ORF3a18G18VgGtgTt6767AY.3.10.005712
ORF3a18G18VgGtgTt6666AY.730.043912
ORF3a18G18VgGtgTt5858B.1.10.001052
ORF3a18G18VgGtgTt5858B.1.1600.001809
ORF3a18G18VgGtgTt5151AY.9.20.001873
ORF3a18G18VgGtgTt4949AY.390.001211
ORF3a18G18VgGtgTt3939P.10.000614
ORF3a18G18VgGtgTt3838AY.340.003685
ORF3a18G18VgGtgTt3636B.1.1770.000474
ORF3a18G18VgGtgTt2929AY.1200.001078
ORF3a18G18VgGtgTt2727AY.46.60.00195
ORF3a18G18VgGtgTt2626AY.99.20.002396
ORF3a18G18VgGtgTt2626B.1.1.5190.001032
ORF3a18G18VgGtgTt2525AY.39.10.00099
ORF3a18G18VgGtgTt2525B.1.5820.012267
ORF3a18G18VgGtgTt2222AY.4.20.000477
ORF3a18G18VgGtgTt2222AY.98.10.001065
ORF3a18G18VgGtgTt2222B.1.4250.065868
ORF3a18G18VgGtgTt2020B.1.20.000176
ORF3a18G18VgGtgTt1919B.1.617.10.00245
ORF3a18G18VgGtgTt1717AY.840.007437
ORF3a18G18VgGtgTt1616AY.1180.001002
ORF3a18G18VgGtgTt1515AY.920.004309
ORF3a18G18VgGtgTt1515B.1.2210.001065
ORF3a18G18VgGtgTt1414B.1.2430.000974
ORF3a18G18VgGtgTt1313B.1.4290.000306
ORF3a18G18VgGtgTt1313P.1.170.002103
ORF3a18G18VgGtgTt1313Q.80.002144
ORF3a18G18VgGtgTt1212AY.50.000248
ORF3a18G18VgGtgTt1111AY.140.000968
ORF3a18G18VgGtgTt1111AY.410.003233
ORF3a18G18VgGtgTt1111AY.470.000342
ORF3a18G18VgGtgTt1111AY.750.000616
ORF3a18G18VgGtgTt1111B.1.1.2040.033435
ORF3a18G18VgGtgTt1111B.1.3510.000327
ORF3a18G18VgGtgTt1010AY.1190.000353
ORF3a18G18VgGtgTt1010AY.200.000389
ORF3a18G18VgGtgTt1010AY.290.000158
ORF3a18G18VgGtgTt1010AY.950.00761
ORF3a18G18VgGtgTt1010B.1.4090.007812
ORF3a18G18VgGtgTt1010B.1.5000.526316
ORF3a18G18VgGtgTt99AF.10.333333
ORF3a18G18VgGtgTt99B.1.4270.000454
ORF3a18G18VgGtgTt88AY.1060.002679
ORF3a18G18VgGtgTt88AY.230.000558
ORF3a18G18VgGtgTt88AY.330.000534
ORF3a18G18VgGtgTt88P.1.140.000382
ORF3a18G18VgGtgTt77AY.450.000852
ORF3a18G18VgGtgTt77AY.46.20.004447
ORF3a18G18VgGtgTt77AY.46.30.006536
ORF3a18G18VgGtgTt77AY.9.10.000586
ORF3a18G18VgGtgTt77B.1.5260.000165
ORF3a18G18VgGtgTt66AY.980.000474
ORF3a18G18VgGtgTt66B.1.1.270.033898
ORF3a18G18VgGtgTt66B.60.00546
ORF3a18G18VgGtgTt55AY.1130.000712
ORF3a18G18VgGtgTt55B.1.1.1270.3125
ORF3a18G18VgGtgTt55B.1.1.2840.000537
ORF3a18G18VgGtgTt55B.1.360.00073
ORF3a18G18VgGtgTt55B.1.5750.001517
ORF3a18G18VgGtgTt55C.370.00058
ORF3a18G18VgGtgTt44AY.1020.000106
ORF3a18G18VgGtgTt44AY.130.000644
ORF3a18G18VgGtgTt44AY.260.000113
ORF3a18G18VgGtgTt44AY.4.50.00043
ORF3a18G18VgGtgTt44AY.460.000416
ORF3a18G18VgGtgTt44AY.5.30.00135
ORF3a18G18VgGtgTt44AY.540.000381
ORF3a18G18VgGtgTt44AY.710.0019
ORF3a18G18VgGtgTt44AY.970.006803
ORF3a18G18VgGtgTt44B.1.177.730.002265
ORF3a18G18VgGtgTt44B.1.6250.009412
ORF3a18G18VgGtgTt33AY.10.001187
ORF3a18G18VgGtgTt33AY.1050.001929
ORF3a18G18VgGtgTt33AY.1140.000693
ORF3a18G18VgGtgTt33AY.1160.00086
ORF3a18G18VgGtgTt33AY.380.001498
ORF3a18G18VgGtgTt33AY.700.000626
ORF3a18G18VgGtgTt33AY.90.000203
ORF3a18G18VgGtgTt33AY.940.001328
ORF3a18G18VgGtgTt33AY.990.003148
ORF3a18G18VgGtgTt33AY.99.10.004658
ORF3a18G18VgGtgTt33B0.000383
ORF3a18G18VgGtgTt33B.1.1.2910.002227
ORF3a18G18VgGtgTt33B.1.1.3110.001074
ORF3a18G18VgGtgTt33B.1.177.810.000568
ORF3a18G18VgGtgTt33B.1.36.310.005254
ORF3a18G18VgGtgTt33B.1.5960.000261
ORF3a18G18VgGtgTt33B.1.6370.000219
ORF3a18G18VgGtgTt22AY.100.00106
ORF3a18G18VgGtgTt22AY.116.10.000623
ORF3a18G18VgGtgTt22AY.1170.000169
ORF3a18G18VgGtgTt22AY.120.000632
ORF3a18G18VgGtgTt22AY.160.000759
ORF3a18G18VgGtgTt22AY.650.001066
ORF3a18G18VgGtgTt22AY.690.000373
ORF3a18G18VgGtgTt22AY.7.10.000225
ORF3a18G18VgGtgTt22AY.740.000231
ORF3a18G18VgGtgTt22AY.75.10.000361
ORF3a18G18VgGtgTt22B.1.1.1890.003026
ORF3a18G18VgGtgTt22B.1.1.2220.000408
ORF3a18G18VgGtgTt22B.1.1.3180.000604
ORF3a18G18VgGtgTt22B.1.110.30.001437
ORF3a18G18VgGtgTt22B.1.2580.000133
ORF3a18G18VgGtgTt22B.1.36.290.001035
ORF3a18G18VgGtgTt22B.1.36.80.002
ORF3a18G18VgGtgTt22B.1.5250.000226
ORF3a18G18VgGtgTt22B.1.5760.001813
ORF3a18G18VgGtgTt22B.1.5770.001375
ORF3a18G18VgGtgTt22C.360.001821
ORF3a18G18VgGtgTt22C.36.30.001134
ORF3a18G18VgGtgTt22D.20.00015
ORF3a18G18VgGtgTt22Q.10.000253
ORF3a18G18VgGtgTt11A.10.000282
ORF3a18G18VgGtgTt11AY.1000.000046
ORF3a18G18VgGtgTt11AY.1090.00074
ORF3a18G18VgGtgTt11AY.1100.000113
ORF3a18G18VgGtgTt11AY.1110.000183
ORF3a18G18VgGtgTt11AY.240.000431
ORF3a18G18VgGtgTt11AY.270.000065
ORF3a18G18VgGtgTt11AY.320.000532
ORF3a18G18VgGtgTt11AY.4.30.000842
ORF3a18G18VgGtgTt11AY.46.10.001027
ORF3a18G18VgGtgTt11AY.550.000917
ORF3a18G18VgGtgTt11AY.580.000907
ORF3a18G18VgGtgTt11AY.600.000938
ORF3a18G18VgGtgTt11AY.770.001127
ORF3a18G18VgGtgTt11AY.830.001724
ORF3a18G18VgGtgTt11AY.860.00083
ORF3a18G18VgGtgTt11AY.880.000884
ORF3a18G18VgGtgTt11AY.900.000684
ORF3a18G18VgGtgTt11AY.910.00073
ORF3a18G18VgGtgTt11AY.930.000273
ORF3a18G18VgGtgTt11B.1.1.1760.000439
ORF3a18G18VgGtgTt11B.1.1.2030.016949
ORF3a18G18VgGtgTt11B.1.1.2140.000055
ORF3a18G18VgGtgTt11B.1.1.250.000569
ORF3a18G18VgGtgTt11B.1.1.280.000311
ORF3a18G18VgGtgTt11B.1.1.3120.001912
ORF3a18G18VgGtgTt11B.1.1.500.000679
ORF3a18G18VgGtgTt11B.1.1.5210.005348
ORF3a18G18VgGtgTt11B.1.1.5250.005464
ORF3a18G18VgGtgTt11B.1.1.700.000341
ORF3a18G18VgGtgTt11B.1.1.710.006061
ORF3a18G18VgGtgTt11B.1.1470.000756
ORF3a18G18VgGtgTt11B.1.177.160.000664
ORF3a18G18VgGtgTt11B.1.177.450.000381
ORF3a18G18VgGtgTt11B.1.177.570.000281
ORF3a18G18VgGtgTt11B.1.177.750.001041
ORF3a18G18VgGtgTt11B.1.177.770.000726
ORF3a18G18VgGtgTt11B.1.177.860.000183
ORF3a18G18VgGtgTt11B.1.1870.033333
ORF3a18G18VgGtgTt11B.1.2340.000132
ORF3a18G18VgGtgTt11B.1.258.40.003448
ORF3a18G18VgGtgTt11B.1.2600.003344
ORF3a18G18VgGtgTt11B.1.351.20.000303
ORF3a18G18VgGtgTt11B.1.36.160.001425
ORF3a18G18VgGtgTt11B.1.36.170.000494
ORF3a18G18VgGtgTt11B.1.4020.009804
ORF3a18G18VgGtgTt11B.1.4560.003268
ORF3a18G18VgGtgTt11B.1.4690.00361
ORF3a18G18VgGtgTt11B.1.4990.00105
ORF3a18G18VgGtgTt11B.1.5210.004975
ORF3a18G18VgGtgTt11B.1.6210.000089
ORF3a18G18VgGtgTt11B.1.6300.005236
ORF3a18G18VgGtgTt11B.1.9.40.006135
ORF3a18G18VgGtgTt11B.30.000831
ORF3a18G18VgGtgTt11C.20.016129
ORF3a18G18VgGtgTt11P.1.120.000484
ORF3a18G18VgGtgTt11P.1.70.000319
ORF3a18G18VgGtgTt11Q.30.000145
ORF3a18G18VgGtgTt11R.20.014493
ORF3a18G18VgGtgTt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.