CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 18 & Codon = gAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18DnonsyngGtgAt996996125444-25446

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18DgGtgAt996996All0.00019
ORF3a18G18DgGtgAt305305AY.40.000475
ORF3a18G18DgGtgAt161161B.1.1.70.000144
ORF3a18G18DgGtgAt124124AY.430.000549
ORF3a18G18DgGtgAt8585B.1.617.20.00032
ORF3a18G18DgGtgAt6969AY.1020.001829
ORF3a18G18DgGtgAt6464AY.290.00101
ORF3a18G18DgGtgAt2828B.1.1.2900.509091
ORF3a18G18DgGtgAt2121AY.30.000209
ORF3a18G18DgGtgAt1313AY.440.000079
ORF3a18G18DgGtgAt1212P.10.000189
ORF3a18G18DgGtgAt1111B.1.1.1410.022133
ORF3a18G18DgGtgAt1111B.1.4780.129412
ORF3a18G18DgGtgAt99AY.1030.000056
ORF3a18G18DgGtgAt99AY.390.000222
ORF3a18G18DgGtgAt77B.1.2430.000487
ORF3a18G18DgGtgAt66AY.250.000036
ORF3a18G18DgGtgAt66AY.4.20.00013
ORF3a18G18DgGtgAt55B.1.1.280.001556
ORF3a18G18DgGtgAt44AY.98.10.000194
ORF3a18G18DgGtgAt33AY.5.40.00083
ORF3a18G18DgGtgAt33AY.90.000203
ORF3a18G18DgGtgAt33B.1.1770.00004
ORF3a18G18DgGtgAt22AY.1180.000125
ORF3a18G18DgGtgAt22AY.980.000158
ORF3a18G18DgGtgAt22B.1.10.000036
ORF3a18G18DgGtgAt22B.1.1.5190.000079
ORF3a18G18DgGtgAt22B.1.177.650.001331
ORF3a18G18DgGtgAt22B.1.2580.000133
ORF3a18G18DgGtgAt11A.290.005319
ORF3a18G18DgGtgAt11AY.1130.000142
ORF3a18G18DgGtgAt11AY.200.000039
ORF3a18G18DgGtgAt11AY.230.00007
ORF3a18G18DgGtgAt11AY.240.000431
ORF3a18G18DgGtgAt11AY.4.2.10.000149
ORF3a18G18DgGtgAt11AY.420.00004
ORF3a18G18DgGtgAt11AY.460.000104
ORF3a18G18DgGtgAt11AY.46.10.001027
ORF3a18G18DgGtgAt11AY.50.000021
ORF3a18G18DgGtgAt11AY.610.000105
ORF3a18G18DgGtgAt11AY.840.000437
ORF3a18G18DgGtgAt11AY.850.000427
ORF3a18G18DgGtgAt11AY.990.001049
ORF3a18G18DgGtgAt11B.1.1.2170.003636
ORF3a18G18DgGtgAt11B.1.1.2200.001859
ORF3a18G18DgGtgAt11B.1.1.2630.001558
ORF3a18G18DgGtgAt11B.1.1600.000031
ORF3a18G18DgGtgAt11B.1.177.120.000152
ORF3a18G18DgGtgAt11B.1.5250.000113
ORF3a18G18DgGtgAt11B.1.5260.000024
ORF3a18G18DgGtgAt11B.1.5820.000491
ORF3a18G18DgGtgAt11B.1.5960.000087
ORF3a18G18DgGtgAt11B.1.617.10.000129
ORF3a18G18DgGtgAt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.