CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 18 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18CnonsynGgtTgt18031803125444-25446

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18CGgtTgt18031803All0.000345
ORF3a18G18CGgtTgt845845B.1.20.007441
ORF3a18G18CGgtTgt221221B.1.1.70.000198
ORF3a18G18CGgtTgt8787B.1.617.10.01122
ORF3a18G18CGgtTgt8484AY.950.063927
ORF3a18G18CGgtTgt6060AY.40.000093
ORF3a18G18CGgtTgt3535B.1.4260.035318
ORF3a18G18CGgtTgt2727B.1.1.2320.049002
ORF3a18G18CGgtTgt2727B.1.5260.000635
ORF3a18G18CGgtTgt2424AY.250.000144
ORF3a18G18CGgtTgt2222B.1.1770.00029
ORF3a18G18CGgtTgt2020B.1.617.20.000075
ORF3a18G18CGgtTgt1717B.10.000156
ORF3a18G18CGgtTgt1515AY.440.000091
ORF3a18G18CGgtTgt1515B.1.1600.000468
ORF3a18G18CGgtTgt1515B.1.3510.000446
ORF3a18G18CGgtTgt1212B.1.10.000218
ORF3a18G18CGgtTgt1212B.1.1.2840.001289
ORF3a18G18CGgtTgt1111AY.30.000109
ORF3a18G18CGgtTgt1010AY.60.000411
ORF3a18G18CGgtTgt99AY.200.00035
ORF3a18G18CGgtTgt99B.1.360.001313
ORF3a18G18CGgtTgt88AY.1130.001139
ORF3a18G18CGgtTgt88B.1.177.70.001319
ORF3a18G18CGgtTgt77AY.1030.000043
ORF3a18G18CGgtTgt77AY.420.000282
ORF3a18G18CGgtTgt77AY.9.20.000257
ORF3a18G18CGgtTgt77B.1.1.5190.000278
ORF3a18G18CGgtTgt77B.1.5990.025547
ORF3a18G18CGgtTgt66AY.430.000027
ORF3a18G18CGgtTgt66AY.98.10.000291
ORF3a18G18CGgtTgt66B.1.36.290.003104
ORF3a18G18CGgtTgt66R.10.00054
ORF3a18G18CGgtTgt55AY.1020.000133
ORF3a18G18CGgtTgt55B.1.5950.001305
ORF3a18G18CGgtTgt55C.370.00058
ORF3a18G18CGgtTgt44AY.1000.000184
ORF3a18G18CGgtTgt44AY.1210.000541
ORF3a18G18CGgtTgt44AY.390.000099
ORF3a18G18CGgtTgt44AY.50.000083
ORF3a18G18CGgtTgt44B.1.4290.000094
ORF3a18G18CGgtTgt44B.1.6370.000292
ORF3a18G18CGgtTgt44P.10.000063
ORF3a18G18CGgtTgt33AY.260.000085
ORF3a18G18CGgtTgt33AY.290.000047
ORF3a18G18CGgtTgt33B0.000383
ORF3a18G18CGgtTgt33B.1.2320.001612
ORF3a18G18CGgtTgt33B.1.5960.000261
ORF3a18G18CGgtTgt33P.1.140.000143
ORF3a18G18CGgtTgt33P.1.70.000958
ORF3a18G18CGgtTgt33Q.10.000379
ORF3a18G18CGgtTgt220.111111
ORF3a18G18CGgtTgt22A.20.001324
ORF3a18G18CGgtTgt22AY.190.002281
ORF3a18G18CGgtTgt22AY.4.20.000043
ORF3a18G18CGgtTgt22AY.450.000243
ORF3a18G18CGgtTgt22AY.540.000191
ORF3a18G18CGgtTgt22AY.700.000417
ORF3a18G18CGgtTgt22B.1.1.2140.000111
ORF3a18G18CGgtTgt22B.1.1.2160.001781
ORF3a18G18CGgtTgt22B.1.1.3120.003824
ORF3a18G18CGgtTgt22B.1.2430.000139
ORF3a18G18CGgtTgt22B.1.36.220.002415
ORF3a18G18CGgtTgt22B.1.4270.000101
ORF3a18G18CGgtTgt22B.1.4990.002101
ORF3a18G18CGgtTgt22B.1.5680.002222
ORF3a18G18CGgtTgt22C.36.30.001134
ORF3a18G18CGgtTgt22D.20.00015
ORF3a18G18CGgtTgt22P.1.170.000324
ORF3a18G18CGgtTgt11AY.100.00053
ORF3a18G18CGgtTgt11AY.1160.000287
ORF3a18G18CGgtTgt11AY.1190.000035
ORF3a18G18CGgtTgt11AY.1200.000037
ORF3a18G18CGgtTgt11AY.120.2.10.000498
ORF3a18G18CGgtTgt11AY.16.10.00047
ORF3a18G18CGgtTgt11AY.280.00189
ORF3a18G18CGgtTgt11AY.340.000097
ORF3a18G18CGgtTgt11AY.350.000233
ORF3a18G18CGgtTgt11AY.370.000316
ORF3a18G18CGgtTgt11AY.46.50.000198
ORF3a18G18CGgtTgt11AY.470.000031
ORF3a18G18CGgtTgt11AY.510.000909
ORF3a18G18CGgtTgt11AY.630.000387
ORF3a18G18CGgtTgt11AY.690.000187
ORF3a18G18CGgtTgt11AY.920.000287
ORF3a18G18CGgtTgt11AY.99.20.000092
ORF3a18G18CGgtTgt11B.1.1.4200.001006
ORF3a18G18CGgtTgt11B.1.1.4320.001266
ORF3a18G18CGgtTgt11B.1.1.5220.017241
ORF3a18G18CGgtTgt11B.1.1.630.000386
ORF3a18G18CGgtTgt11B.1.1.950.019608
ORF3a18G18CGgtTgt11B.1.110.30.000718
ORF3a18G18CGgtTgt11B.1.160.160.000929
ORF3a18G18CGgtTgt11B.1.177.120.000152
ORF3a18G18CGgtTgt11B.1.177.230.003236
ORF3a18G18CGgtTgt11B.1.177.310.011494
ORF3a18G18CGgtTgt11B.1.177.50.001242
ORF3a18G18CGgtTgt11B.1.177.600.000218
ORF3a18G18CGgtTgt11B.1.177.650.000665
ORF3a18G18CGgtTgt11B.1.177.750.001041
ORF3a18G18CGgtTgt11B.1.2340.000132
ORF3a18G18CGgtTgt11B.1.2510.021739
ORF3a18G18CGgtTgt11B.1.2560.017241
ORF3a18G18CGgtTgt11B.1.3020.013333
ORF3a18G18CGgtTgt11B.1.3190.003049
ORF3a18G18CGgtTgt11B.1.36.100.004785
ORF3a18G18CGgtTgt11B.1.36.170.000494
ORF3a18G18CGgtTgt11B.1.36.80.001
ORF3a18G18CGgtTgt11B.1.3690.000285
ORF3a18G18CGgtTgt11B.1.4600.017857
ORF3a18G18CGgtTgt11B.1.5240.001406
ORF3a18G18CGgtTgt11B.1.5770.000687
ORF3a18G18CGgtTgt11B.1.5970.00463
ORF3a18G18CGgtTgt11B.1.6280.000352
ORF3a18G18CGgtTgt11C.160.00106
ORF3a18G18CGgtTgt11C.350.000774
ORF3a18G18CGgtTgt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.