CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 175 | T175I | nonsyn | aCa | aTa | 16067 | 16067 | 1 | 25915-25917 | |
ORF3a | 175 | T175A | nonsyn | Aca | Gca | 307 | 307 | 1 | 25915-25917 | |
ORF3a | 175 | T175R | nonsyn | aCa | aGa | 216 | 216 | 1 | 25915-25917 | |
ORF3a | 175 | T175T | syn | acA | acG | 206 | 125 | 0.606796 | 25915-25917 | |
ORF3a | 175 | T175T | syn | acA | acT | 206 | 64 | 0.31068 | 25915-25917 | |
ORF3a | 175 | T175T | syn | acA | acC | 206 | 17 | 0.0825243 | 25915-25917 | |
ORF3a | 175 | T175K | nonsyn | aCa | aAa | 119 | 118 | 0.991597 | 25915-25917 | |
ORF3a | 175 | T175K | nonsyn | aCA | aAG | 119 | 1 | 0.00840336 | 25915-25917 | |
ORF3a | 175 | T175del | del | ACA | --- | 46 | 46 | 1 | 25915-25917 | |
ORF3a | 175 | T175S | nonsyn | Aca | Tca | 28 | 28 | 1 | 25915-25917 | |
ORF3a | 175 | T175P | nonsyn | Aca | Cca | 6 | 6 | 1 | 25915-25917 | |
ORF3a | 175 | T175del2 | del | aCA | a-- | 2 | 2 | 1 | 25915-25917 | |
ORF3a | 175 | T175del1 | del | Aca | -ca | 2 | 1 | 0.5 | 25915-25917 | |
ORF3a | 175 | T175del1 | del | ACA | -NN | 2 | 1 | 0.5 | 25915-25917 | |
ORF3a | 175 | T175X | nonsyn | ACa | TAa | 1 | 1 | 1 | 25915-25917 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 175 | T175I | aCa | aTa | 16067 | 16067 | All | 0.003073 |
ORF3a | 175 | T175I | aCa | aTa | 4181 | 4181 | B.1.1.7 | 0.003743 |
ORF3a | 175 | T175I | aCa | aTa | 1973 | 1973 | AY.4 | 0.003071 |
ORF3a | 175 | T175I | aCa | aTa | 1099 | 1099 | B.1 | 0.010066 |
ORF3a | 175 | T175I | aCa | aTa | 530 | 530 | AY.44 | 0.003226 |
ORF3a | 175 | T175I | aCa | aTa | 523 | 523 | B.1.36.31 | 0.915937 |
ORF3a | 175 | T175I | aCa | aTa | 468 | 468 | B.1.617.2 | 0.001762 |
ORF3a | 175 | T175I | aCa | aTa | 422 | 422 | B.1.2 | 0.003716 |
ORF3a | 175 | T175I | aCa | aTa | 366 | 366 | AY.25 | 0.002201 |
ORF3a | 175 | T175I | aCa | aTa | 324 | 324 | B.1.427 | 0.016361 |
ORF3a | 175 | T175A | Aca | Gca | 307 | 307 | All | 0.000059 |
ORF3a | 175 | T175I | aCa | aTa | 301 | 301 | B.1.177 | 0.003963 |
ORF3a | 175 | T175I | aCa | aTa | 269 | 269 | AY.43 | 0.001192 |
ORF3a | 175 | T175I | aCa | aTa | 249 | 249 | B.1.1 | 0.004517 |
ORF3a | 175 | T175I | aCa | aTa | 223 | 223 | B.1.351.2 | 0.067474 |
ORF3a | 175 | T175R | aCa | aGa | 216 | 216 | All | 0.000041 |
ORF3a | 175 | T175T | acA | acG | 125 | 206 | All | 0.000024 |
ORF3a | 175 | T175T | acA | acT | 64 | 206 | All | 0.000012 |
ORF3a | 175 | T175T | acA | acC | 17 | 206 | All | 0.000003 |
ORF3a | 175 | T175A | Aca | Gca | 206 | 206 | B.1.1.7 | 0.000184 |
ORF3a | 175 | T175I | aCa | aTa | 198 | 198 | B.1.88.1 | 0.951923 |
ORF3a | 175 | T175I | aCa | aTa | 183 | 183 | AY.103 | 0.001136 |
ORF3a | 175 | T175I | aCa | aTa | 166 | 166 | P.1 | 0.002615 |
ORF3a | 175 | T175I | aCa | aTa | 158 | 158 | B.1.429 | 0.003718 |
ORF3a | 175 | T175I | aCa | aTa | 155 | 155 | B.1.1.519 | 0.006155 |
ORF3a | 175 | T175I | aCa | aTa | 141 | 141 | B.1.177.60 | 0.030799 |
ORF3a | 175 | T175R | aCa | aGa | 133 | 133 | B.1.2 | 0.001171 |
ORF3a | 175 | T175I | aCa | aTa | 132 | 132 | B.1.351 | 0.003924 |
ORF3a | 175 | T175I | aCa | aTa | 128 | 128 | AY.3 | 0.001273 |
ORF3a | 175 | T175K | aCa | aAa | 118 | 119 | All | 0.000023 |
ORF3a | 175 | T175K | aCA | aAG | 1 | 119 | All | 0 |
ORF3a | 175 | T175I | aCa | aTa | 117 | 117 | C.35 | 0.090557 |
ORF3a | 175 | T175I | aCa | aTa | 116 | 116 | B.1.596 | 0.010108 |
ORF3a | 175 | T175I | aCa | aTa | 114 | 114 | AY.75.1 | 0.020555 |
ORF3a | 175 | T175I | aCa | aTa | 110 | 110 | B.1.160 | 0.003431 |
ORF3a | 175 | T175I | aCa | aTa | 108 | 108 | B.1.620 | 0.102176 |
ORF3a | 175 | T175I | aCa | aTa | 91 | 91 | B.1.603 | 0.968085 |
ORF3a | 175 | T175I | aCa | aTa | 86 | 86 | AY.74 | 0.009946 |
ORF3a | 175 | T175I | aCa | aTa | 85 | 85 | AY.100 | 0.003911 |
ORF3a | 175 | T175I | aCa | aTa | 73 | 73 | B.1.575 | 0.022148 |
ORF3a | 175 | T175I | aCa | aTa | 73 | 73 | B.1.588 | 0.066424 |
ORF3a | 175 | T175I | aCa | aTa | 70 | 70 | B.1.243 | 0.004871 |
ORF3a | 175 | T175I | aCa | aTa | 65 | 65 | AY.39 | 0.001606 |
ORF3a | 175 | T175I | aCa | aTa | 63 | 63 | AY.102 | 0.00167 |
ORF3a | 175 | T175I | aCa | aTa | 56 | 56 | AY.118 | 0.003508 |
ORF3a | 175 | T175I | aCa | aTa | 55 | 55 | B.1.177.86 | 0.01009 |
ORF3a | 175 | T175I | aCa | aTa | 54 | 54 | AY.26 | 0.001529 |
ORF3a | 175 | T175I | aCa | aTa | 54 | 54 | AY.42 | 0.002172 |
ORF3a | 175 | T175T | acA | acG | 54 | 54 | B.1.1.1 | 0.017641 |
ORF3a | 175 | T175T | acA | acT | 29 | 54 | B.1.1.7 | 0.000026 |
ORF3a | 175 | T175T | acA | acG | 24 | 54 | B.1.1.7 | 0.000021 |
ORF3a | 175 | T175T | acA | acC | 1 | 54 | B.1.1.7 | 0.000001 |
ORF3a | 175 | T175I | aCa | aTa | 54 | 54 | B.1.416.1 | 0.084375 |
ORF3a | 175 | T175I | aCa | aTa | 51 | 51 | B.1.1.320 | 0.927273 |
ORF3a | 175 | T175I | aCa | aTa | 51 | 51 | B.1.241 | 0.041396 |
ORF3a | 175 | T175I | aCa | aTa | 51 | 51 | C.37 | 0.005919 |
ORF3a | 175 | T175I | aCa | aTa | 51 | 51 | R.1 | 0.00459 |
ORF3a | 175 | T175A | Aca | Gca | 49 | 49 | AY.4 | 0.000076 |
ORF3a | 175 | T175I | aCa | aTa | 47 | 47 | B.46 | 0.979167 |
ORF3a | 175 | T175del | ACA | --- | 46 | 46 | All | 0.000009 |
ORF3a | 175 | T175I | aCa | aTa | 45 | 45 | B.1.1.521 | 0.240642 |
ORF3a | 175 | T175I | aCa | aTa | 45 | 45 | P.1.14 | 0.002151 |
ORF3a | 175 | T175I | aCa | aTa | 42 | 42 | AY.5 | 0.000867 |
ORF3a | 175 | T175I | aCa | aTa | 42 | 42 | B.1.526 | 0.000987 |
ORF3a | 175 | T175I | aCa | aTa | 42 | 42 | B.1.561 | 0.016673 |
ORF3a | 175 | T175I | aCa | aTa | 39 | 39 | B.1.621 | 0.003452 |
ORF3a | 175 | T175I | aCa | aTa | 38 | 38 | B.1.177.53 | 0.090909 |
ORF3a | 175 | T175I | aCa | aTa | 37 | 37 | AY.29 | 0.000584 |
ORF3a | 175 | T175I | aCa | aTa | 36 | 36 | N.1 | 0.610169 |
ORF3a | 175 | T175I | aCa | aTa | 35 | 35 | B.1.1.189 | 0.05295 |
ORF3a | 175 | T175I | aCa | aTa | 32 | 32 | B.1.1.304 | 0.089888 |
ORF3a | 175 | T175I | aCa | aTa | 31 | 31 | AY.14 | 0.002728 |
ORF3a | 175 | T175K | aCa | aAa | 31 | 31 | AY.4 | 0.000048 |
ORF3a | 175 | T175R | aCa | aGa | 31 | 31 | AY.46.4 | 0.0051 |
ORF3a | 175 | T175I | aCa | aTa | 31 | 31 | AY.9.1 | 0.002595 |
ORF3a | 175 | T175I | aCa | aTa | 30 | 30 | B.1.36 | 0.004377 |
ORF3a | 175 | T175I | aCa | aTa | 29 | 29 | B.1.1.70 | 0.009891 |
ORF3a | 175 | T175S | Aca | Tca | 28 | 28 | All | 0.000005 |
ORF3a | 175 | T175I | aCa | aTa | 28 | 28 | AY.119 | 0.000989 |
ORF3a | 175 | T175I | aCa | aTa | 28 | 28 | AY.4.2 | 0.000607 |
ORF3a | 175 | T175I | aCa | aTa | 28 | 28 | B.1.1.214 | 0.001553 |
ORF3a | 175 | T175I | aCa | aTa | 27 | 27 | AY.20 | 0.001049 |
ORF3a | 175 | T175I | aCa | aTa | 24 | 24 | B.1.1.39 | 0.012232 |
ORF3a | 175 | T175I | aCa | aTa | 23 | 23 | AY.75 | 0.001289 |
ORF3a | 175 | T175I | aCa | aTa | 23 | 23 | B.1.160.30 | 0.068452 |
ORF3a | 175 | T175I | aCa | aTa | 23 | 23 | B.1.254 | 0.575 |
ORF3a | 175 | T175I | aCa | aTa | 23 | 23 | B.1.258 | 0.001531 |
ORF3a | 175 | T175I | aCa | aTa | 22 | 22 | B.1.1.464 | 0.032401 |
ORF3a | 175 | T175I | aCa | aTa | 22 | 22 | B.1.110.3 | 0.015805 |
ORF3a | 175 | T175I | aCa | aTa | 21 | 21 | B.1.1.398 | 0.067742 |
ORF3a | 175 | T175I | aCa | aTa | 21 | 21 | B.1.36.22 | 0.025362 |
ORF3a | 175 | T175I | aCa | aTa | 21 | 21 | B.1.471 | 0.057377 |
ORF3a | 175 | T175I | aCa | aTa | 20 | 20 | AY.46 | 0.002082 |
ORF3a | 175 | T175I | aCa | aTa | 19 | 19 | AY.4.4 | 0.007774 |
ORF3a | 175 | T175I | aCa | aTa | 19 | 19 | AY.47 | 0.000591 |
ORF3a | 175 | T175I | aCa | aTa | 19 | 19 | B.1.480 | 0.047264 |
ORF3a | 175 | T175I | aCa | aTa | 18 | 18 | B.1.221 | 0.001279 |
ORF3a | 175 | T175I | aCa | aTa | 18 | 18 | B.1.239 | 0.021978 |
ORF3a | 175 | T175I | aCa | aTa | 18 | 18 | B.1.389 | 0.018036 |
ORF3a | 175 | T175I | aCa | aTa | 17 | 17 | B.1.1.216 | 0.015138 |
ORF3a | 175 | T175T | acA | acG | 16 | 16 | AY.25 | 0.000096 |
ORF3a | 175 | T175I | aCa | aTa | 16 | 16 | AY.60 | 0.015009 |
ORF3a | 175 | T175I | aCa | aTa | 16 | 16 | B.1.1.33 | 0.006734 |
ORF3a | 175 | T175I | aCa | aTa | 15 | 15 | AY.33 | 0.001002 |
ORF3a | 175 | T175I | aCa | aTa | 14 | 14 | AY.23 | 0.000976 |
ORF3a | 175 | T175S | Aca | Tca | 14 | 14 | AY.44 | 0.000085 |
ORF3a | 175 | T175I | aCa | aTa | 14 | 14 | B.1.177.15 | 0.008833 |
ORF3a | 175 | T175I | aCa | aTa | 14 | 14 | B.1.565 | 0.011345 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | AY.117 | 0.001099 |
ORF3a | 175 | T175T | acA | acC | 13 | 13 | AY.44 | 0.000079 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | AY.54 | 0.00124 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | AY.69 | 0.002427 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | B.1.149 | 0.044521 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | B.1.525 | 0.001471 |
ORF3a | 175 | T175I | aCa | aTa | 13 | 13 | N.5 | 0.022968 |
ORF3a | 175 | T175K | aCa | aAa | 12 | 12 | AY.3 | 0.000119 |
ORF3a | 175 | T175K | aCa | aAa | 12 | 12 | AY.43 | 0.000053 |
ORF3a | 175 | T175I | aCa | aTa | 12 | 12 | B.1.1.279 | 0.013453 |
ORF3a | 175 | T175I | aCa | aTa | 12 | 12 | B.1.1.434 | 0.004183 |
ORF3a | 175 | T175I | aCa | aTa | 12 | 12 | B.1.36.8 | 0.012 |
ORF3a | 175 | T175I | aCa | aTa | 12 | 12 | B.1.628 | 0.004228 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | AY.105 | 0.007074 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | AY.114 | 0.002542 |
ORF3a | 175 | T175A | Aca | Gca | 11 | 11 | AY.25 | 0.000066 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | AY.30 | 0.004353 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | AY.7 | 0.002156 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | B.1.1.404 | 0.174603 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | B.1.1.63 | 0.004244 |
ORF3a | 175 | T175del | ACA | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | B.1.177.7 | 0.001813 |
ORF3a | 175 | T175A | Aca | Gca | 11 | 11 | B.1.2 | 0.000097 |
ORF3a | 175 | T175T | acA | acG | 6 | 11 | B.1.2 | 0.000053 |
ORF3a | 175 | T175T | acA | acT | 5 | 11 | B.1.2 | 0.000044 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | B.1.404 | 0.014323 |
ORF3a | 175 | T175I | aCa | aTa | 11 | 11 | B.1.441 | 0.105769 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | AY.109 | 0.007396 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | AY.29.1 | 0.002205 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | AY.6 | 0.000411 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | AY.9.2 | 0.000367 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | B.1.240 | 0.002156 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | B.1.36.36 | 0.00602 |
ORF3a | 175 | T175I | aCa | aTa | 10 | 10 | P.1.7 | 0.003193 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | AY.111 | 0.001648 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | AY.45 | 0.001095 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | AY.5.3 | 0.003036 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | AY.53 | 0.002588 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | AY.9 | 0.000608 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | B.1.1.284 | 0.000967 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | B.1.1.50 | 0.00611 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | B.1.177.4 | 0.0019 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | B.1.617.1 | 0.001161 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | B.1.621.1 | 0.004552 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | P.1.16 | 0.003367 |
ORF3a | 175 | T175I | aCa | aTa | 9 | 9 | Q.1 | 0.001137 |
ORF3a | 175 | T175T | acA | acT | 7 | 8 | AY.4 | 0.000011 |
ORF3a | 175 | T175T | acA | acG | 1 | 8 | AY.4 | 0.000002 |
ORF3a | 175 | T175I | aCa | aTa | 8 | 8 | AY.79 | 0.009685 |
ORF3a | 175 | T175I | aCa | aTa | 8 | 8 | AY.85 | 0.003417 |
ORF3a | 175 | T175I | aCa | aTa | 8 | 8 | B.1.36.17 | 0.003953 |
ORF3a | 175 | T175I | aCa | aTa | 8 | 8 | B.1.396 | 0.005646 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | A.23.1 | 0.00493 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AA.7 | 0.06422 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AY.113 | 0.000997 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AY.120 | 0.00026 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AY.27 | 0.000453 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AY.34 | 0.000679 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | AZ.2 | 0.005747 |
ORF3a | 175 | T175R | aCa | aGa | 7 | 7 | B.1 | 0.000064 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | B.1.1.222 | 0.001428 |
ORF3a | 175 | T175K | aCa | aAa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | B.1.36.29 | 0.003621 |
ORF3a | 175 | T175R | aCa | aGa | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 175 | T175K | aCa | aAa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 175 | T175I | aCa | aTa | 7 | 7 | C.36.3 | 0.003971 |
ORF3a | 175 | T175P | Aca | Cca | 6 | 6 | All | 0.000001 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | AY.106 | 0.002009 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | AY.116.1 | 0.001869 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | AY.120.1 | 0.001926 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | AY.3.1 | 0.000512 |
ORF3a | 175 | T175A | Aca | Gca | 6 | 6 | AY.39 | 0.000148 |
ORF3a | 175 | T175R | aCa | aGa | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | AY.4.5 | 0.000645 |
ORF3a | 175 | T175T | acA | acT | 5 | 6 | AY.43 | 0.000022 |
ORF3a | 175 | T175T | acA | acG | 1 | 6 | AY.43 | 0.000004 |
ORF3a | 175 | T175K | aCa | aAa | 6 | 6 | B.1 | 0.000055 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | B.1.177.44 | 0.003114 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | B.1.232 | 0.003224 |
ORF3a | 175 | T175K | aCa | aAa | 6 | 6 | B.1.232 | 0.003224 |
ORF3a | 175 | T175I | aCa | aTa | 6 | 6 | P.2 | 0.00112 |
ORF3a | 175 | T175R | aCa | aGa | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 175 | T175del | ACA | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 175 | T175R | aCa | aGa | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | AY.59 | 0.002648 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | AY.98.1 | 0.000242 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.1.317 | 0.002058 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.1.486 | 0.007886 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.177.81 | 0.000947 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.346 | 0.006553 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.507 | 0.05618 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.517 | 0.002135 |
ORF3a | 175 | T175K | aCa | aAa | 5 | 5 | B.1.526 | 0.000118 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.1.564 | 0.002129 |
ORF3a | 175 | T175del | ACA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 175 | T175T | acA | acG | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | B.13 | 0.227273 |
ORF3a | 175 | T175I | aCa | aTa | 5 | 5 | P.1.15 | 0.001162 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | A.5 | 0.007692 |
ORF3a | 175 | T175T | acA | acG | 4 | 4 | AY.46.4 | 0.000658 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | AY.73 | 0.002661 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 175 | T175del | ACA | --- | 4 | 4 | B.1 | 0.000037 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.1.25 | 0.002274 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.1.269 | 0.005413 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.1.311 | 0.001433 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.1.413 | 0.027586 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.177.51 | 0.018265 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.177.73 | 0.002265 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.177.83 | 0.005926 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.311 | 0.001098 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.369 | 0.001141 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.400 | 0.001716 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.438.1 | 0.000429 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.524 | 0.005626 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.560 | 0.018519 |
ORF3a | 175 | T175A | Aca | Gca | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | B.35 | 0.03125 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
ORF3a | 175 | T175K | aCa | aAa | 4 | 4 | P.1 | 0.000063 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | P.1.10 | 0.001078 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | P.1.17 | 0.000647 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | P.1.4 | 0.003906 |
ORF3a | 175 | T175I | aCa | aTa | 4 | 4 | Q.8 | 0.00066 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | A.2.5 | 0.001497 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.108 | 0.003308 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.19 | 0.003421 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.24 | 0.001293 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.28 | 0.005671 |
ORF3a | 175 | T175T | acA | acT | 2 | 3 | AY.34 | 0.000194 |
ORF3a | 175 | T175T | acA | acG | 1 | 3 | AY.34 | 0.000097 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.41 | 0.000882 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.46.4 | 0.000494 |
ORF3a | 175 | T175T | acA | acG | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.71 | 0.001425 |
ORF3a | 175 | T175K | aCa | aAa | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B | 0.000383 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.1.176 | 0.001318 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.1.442 | 0.055556 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.214.2 | 0.001799 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.258.22 | 0.008 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.36.1 | 0.003421 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.371 | 0.003367 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.599 | 0.010949 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | B.1.600 | 0.017544 |
ORF3a | 175 | T175R | aCa | aGa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | N.4 | 0.012766 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | P.3 | 0.004785 |
ORF3a | 175 | T175I | aCa | aTa | 3 | 3 | Q.2 | 0.00184 |
ORF3a | 175 | T175del | ACA | --- | 2 | 2 | 0.111111 | |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AE.1 | 0.022727 |
ORF3a | 175 | T175del2 | aCA | a-- | 2 | 2 | All | 0 |
ORF3a | 175 | T175del1 | ACA | -NN | 1 | 2 | All | 0 |
ORF3a | 175 | T175del1 | Aca | -ca | 1 | 2 | All | 0 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AU.2 | 0.004843 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.101 | 0.000981 |
ORF3a | 175 | T175S | Aca | Tca | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 175 | T175K | aCa | aAa | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.104 | 0.003968 |
ORF3a | 175 | T175T | acA | acG | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 175 | T175K | aCa | aAa | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 175 | T175T | acA | acT | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 175 | T175R | aCa | aGa | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 175 | T175P | Aca | Cca | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 175 | T175R | aCa | aGa | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 175 | T175K | aCa | aAa | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 175 | T175T | acA | acT | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.7.2 | 0.001119 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.77 | 0.002255 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.89 | 0.009804 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.368 | 0.006173 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.397 | 0.004505 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.420 | 0.002012 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF3a | 175 | T175R | aCa | aGa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.131 | 0.017544 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.143 | 0.042553 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.160.32 | 0.008584 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.167 | 0.015625 |
ORF3a | 175 | T175del | ACA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 175 | T175K | aCa | aAa | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.177.77 | 0.001452 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.177.87 | 0.001456 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.189 | 0.008584 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.222 | 0.003384 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.319 | 0.006098 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.337 | 0.011173 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.401 | 0.016393 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.411 | 0.007407 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 175 | T175T | acA | acT | 1 | 2 | B.1.526 | 0.000024 |
ORF3a | 175 | T175T | acA | acG | 1 | 2 | B.1.526 | 0.000024 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.537 | 0.04 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.545 | 0.028986 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.575.1 | 0.004878 |
ORF3a | 175 | T175K | aCa | aAa | 2 | 2 | B.1.597 | 0.009259 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.618 | 0.008065 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.1.93 | 0.001867 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | B.6 | 0.00182 |
ORF3a | 175 | T175P | Aca | Cca | 2 | 2 | B.6.6 | 0.001778 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | C.13 | 0.051282 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | C.30 | 0.003454 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | C.36 | 0.001821 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | C.4 | 0.02 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 175 | T175T | acA | acT | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | Q.4 | 0.00091 |
ORF3a | 175 | T175I | aCa | aTa | 2 | 2 | Y.1 | 0.025641 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | A.19 | 0.009434 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | A.28 | 0.002646 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AF.1 | 0.037037 |
ORF3a | 175 | T175X | ACa | TAa | 1 | 1 | All | 0 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.22 | 0.002092 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 175 | T175P | Aca | Cca | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 175 | T175T | acA | acC | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 175 | T175del2 | aCA | a-- | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 175 | T175T | acA | acC | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 175 | T175del1 | Aca | -ca | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 175 | T175T | acA | acC | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B | 0.000128 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | B | 0.000128 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B | 0.000128 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.13 | 0.035714 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.133 | 0.008475 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.159 | 0.004673 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.171 | 0.003676 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.196 | 0.005714 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.226 | 0.005814 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.227 | 0.004348 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.237 | 0.005405 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.254 | 0.011236 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.1.254 | 0.011236 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.333 | 0.001076 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.337 | 0.003597 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.367 | 0.055556 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.430 | 0.041667 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.453 | 0.008475 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.461 | 0.012048 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.487 | 0.005587 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 175 | T175del2 | aCA | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.1.95 | 0.019608 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.115 | 0.021739 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.119 | 0.010526 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.12 | 0.008 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.160.22 | 0.006757 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.160.7 | 0.002079 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.166 | 0.008475 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.3 | 0.007634 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.76 | 0.002494 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.199 | 0.004132 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 175 | T175K | aCA | aAG | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.23 | 0.006061 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.258.5 | 0.008772 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.291 | 0.019231 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.36.37 | 0.002778 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.382 | 0.008929 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.383 | 0.009009 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.437 | 0.020833 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.460 | 0.017857 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.469 | 0.00361 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.505 | 0.004386 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.541 | 0.004425 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.549 | 0.007194 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 175 | T175K | aCa | aAa | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 175 | T175X | ACa | TAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 175 | T175P | Aca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.1.94 | 0.027027 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.55 | 0.00295 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | B.55 | 0.00295 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.6.1 | 0.026316 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | C.1.2 | 0.004255 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | K.1 | 0.02381 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | K.3 | 0.006173 |
ORF3a | 175 | T175S | Aca | Tca | 1 | 1 | P.1 | 0.000016 |
ORF3a | 175 | T175R | aCa | aGa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 175 | T175A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF3a | 175 | T175T | acA | acT | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 175 | T175del1 | ACA | -NN | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 175 | T175T | acA | acG | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 175 | T175del | ACA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 175 | T175I | aCa | aTa | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|