CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 174 | G174V | nonsyn | gGc | gTc | 2864 | 2863 | 0.999651 | 25912-25914 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 174 | G174V | gGc | gTc | 2863 | 2864 | All | 0.000548 |
ORF3a | 174 | G174V | gGc | gTc | 1161 | 1161 | AY.25 | 0.006983 |
ORF3a | 174 | G174V | gGc | gTc | 664 | 664 | B.1 | 0.006082 |
ORF3a | 174 | G174V | gGc | gTc | 220 | 220 | B.1.1.222 | 0.04488 |
ORF3a | 174 | G174V | gGc | gTc | 202 | 202 | B.1.1.39 | 0.102956 |
ORF3a | 174 | G174V | gGc | gTc | 171 | 171 | B.1.36 | 0.024949 |
ORF3a | 174 | G174V | gGc | gTc | 122 | 122 | B.1.1.7 | 0.000109 |
ORF3a | 174 | G174V | gGc | gTc | 45 | 45 | B.1.1 | 0.000816 |
ORF3a | 174 | G174V | gGc | gTc | 26 | 27 | B.1.617.2 | 0.000098 |
ORF3a | 174 | G174V | gGc | gTc | 21 | 21 | A.23.1 | 0.014789 |
ORF3a | 174 | G174V | gGc | gTc | 18 | 18 | AY.4 | 0.000028 |
ORF3a | 174 | G174V | gGc | gTc | 15 | 15 | AY.44 | 0.000091 |
ORF3a | 174 | G174V | gGc | gTc | 9 | 9 | B.1.425 | 0.026946 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | AY.102 | 0.000212 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | B.1.336 | 0.019512 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | AY.30 | 0.00277 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | B.1.1.1 | 0.002287 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | B.1.456 | 0.022876 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.36.22 | 0.007246 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.441 | 0.057692 |
ORF3a | 174 | G174V | gGc | gTc | 5 | 5 | B.1.210 | 0.010661 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | B.1.1.46 | 0.017467 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | B.1.433 | 0.01278 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | C.35 | 0.003096 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | C.37 | 0.000464 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.58 | 0.002722 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.72 | 0.004082 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.1.207 | 0.003546 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.1.397 | 0.006757 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.111 | 0.003525 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | C.16 | 0.003181 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.143 | 0.042553 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.160.32 | 0.008584 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.298 | 0.004228 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.388 | 0.181818 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | A.2 | 0.000662 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B | 0.000128 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.500 | 0.02 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.411 | 0.003704 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.417 | 0.028571 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.442 | 0.035714 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.81 | 0.021277 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.40 | 0.000364 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.6 | 0.00091 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | C.22 | 0.071429 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | C.36 | 0.000911 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | P.1 | 0.000016 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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