CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 174 & Codon = gAc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a174G174DnonsyngGcgAc57445744125912-25914

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a174G174DgGcgAc57445744All0.001099
ORF3a174G174DgGcgAc11991199B.1.1.3480.954618
ORF3a174G174DgGcgAc863863B.1.5680.958889
ORF3a174G174DgGcgAc645645B.10.005908
ORF3a174G174DgGcgAc506506B.1.5820.248283
ORF3a174G174DgGcgAc450450B.1.1270.989011
ORF3a174G174DgGcgAc449449B.1.1.70.000402
ORF3a174G174DgGcgAc267267AY.40.000416
ORF3a174G174DgGcgAc177177B.1.2650.224905
ORF3a174G174DgGcgAc152152B.1.1770.002001
ORF3a174G174DgGcgAc149149B.1.2430.010368
ORF3a174G174DgGcgAc9999B.1.10.001796
ORF3a174G174DgGcgAc9898B.1.5430.98
ORF3a174G174DgGcgAc6969B.1.20.000608
ORF3a174G174DgGcgAc4848B.1.1.5190.001906
ORF3a174G174DgGcgAc4646AY.200.001788
ORF3a174G174DgGcgAc4646B.1.617.20.000173
ORF3a174G174DgGcgAc4040B.1.3510.001189
ORF3a174G174DgGcgAc2525AY.50.000516
ORF3a174G174DgGcgAc2424AY.430.000106
ORF3a174G174DgGcgAc2121AY.390.000519
ORF3a174G174DgGcgAc1919B.1.2580.001264
ORF3a174G174DgGcgAc1414B.1.177.430.020679
ORF3a174G174DgGcgAc1313B.1.4990.013655
ORF3a174G174DgGcgAc1212AY.30.000119
ORF3a174G174DgGcgAc1212AY.750.000672
ORF3a174G174DgGcgAc1212B.1.1.2910.008909
ORF3a174G174DgGcgAc1111B.1.5260.000259
ORF3a174G174DgGcgAc1111B.1.6120.029178
ORF3a174G174DgGcgAc1010AY.230.000697
ORF3a174G174DgGcgAc1010AY.470.000311
ORF3a174G174DgGcgAc1010B.1.1.3070.025316
ORF3a174G174DgGcgAc99AY.440.000055
ORF3a174G174DgGcgAc99P.10.000142
ORF3a174G174DgGcgAc88AY.250.000048
ORF3a174G174DgGcgAc88AY.540.000763
ORF3a174G174DgGcgAc88B.1.5950.002088
ORF3a174G174DgGcgAc88B.1.5960.000697
ORF3a174G174DgGcgAc88B.1.6280.002819
ORF3a174G174DgGcgAc88B.1.6370.000585
ORF3a174G174DgGcgAc77AY.1020.000186
ORF3a174G174DgGcgAc66B.1.4510.04918
ORF3a174G174DgGcgAc55B.1.5990.018248
ORF3a174G174DgGcgAc44AY.1030.000025
ORF3a174G174DgGcgAc44AY.1200.000149
ORF3a174G174DgGcgAc44B.1.1.10.001307
ORF3a174G174DgGcgAc44B.1.1.130.142857
ORF3a174G174DgGcgAc44B.1.3110.001098
ORF3a174G174DgGcgAc33B.1.1.1800.032258
ORF3a174G174DgGcgAc33B.1.1.2690.00406
ORF3a174G174DgGcgAc33B.1.1.4170.008108
ORF3a174G174DgGcgAc33B.1.36.220.003623
ORF3a174G174DgGcgAc33B.1.4290.000071
ORF3a174G174DgGcgAc33B.1.5750.00091
ORF3a174G174DgGcgAc33B.1.617.10.000387
ORF3a174G174DgGcgAc33C.10.007177
ORF3a174G174DgGcgAc33C.370.000348
ORF3a174G174DgGcgAc33P.1.150.000697
ORF3a174G174DgGcgAc22AY.1170.000169
ORF3a174G174DgGcgAc22AY.140.000176
ORF3a174G174DgGcgAc22AY.790.002421
ORF3a174G174DgGcgAc22B.1.1.1710.007353
ORF3a174G174DgGcgAc22B.1.1.1740.006757
ORF3a174G174DgGcgAc22B.1.1.2220.000408
ORF3a174G174DgGcgAc22B.1.1.3180.000604
ORF3a174G174DgGcgAc22B.1.1.370.000386
ORF3a174G174DgGcgAc22B.1.1.3880.090909
ORF3a174G174DgGcgAc22B.1.1.4090.005666
ORF3a174G174DgGcgAc22B.1.1.4620.017241
ORF3a174G174DgGcgAc22B.1.177.160.001329
ORF3a174G174DgGcgAc22B.1.177.520.003515
ORF3a174G174DgGcgAc22B.1.177.570.000562
ORF3a174G174DgGcgAc22B.1.3490.00143
ORF3a174G174DgGcgAc22B.1.36.160.002849
ORF3a174G174DgGcgAc22B.1.4590.008163
ORF3a174G174DgGcgAc22B.1.6090.000959
ORF3a174G174DgGcgAc22B.1.6200.001892
ORF3a174G174DgGcgAc22Q.10.000253
ORF3a174G174DgGcgAc11AY.1000.000046
ORF3a174G174DgGcgAc11AY.1070.000466
ORF3a174G174DgGcgAc11AY.1100.000113
ORF3a174G174DgGcgAc11AY.1130.000142
ORF3a174G174DgGcgAc11AY.1160.000287
ORF3a174G174DgGcgAc11AY.116.10.000311
ORF3a174G174DgGcgAc11AY.130.000161
ORF3a174G174DgGcgAc11AY.240.000431
ORF3a174G174DgGcgAc11AY.34.10.00051
ORF3a174G174DgGcgAc11AY.39.10.00004
ORF3a174G174DgGcgAc11AY.39.20.001541
ORF3a174G174DgGcgAc11AY.420.00004
ORF3a174G174DgGcgAc11AY.5.40.000277
ORF3a174G174DgGcgAc11AY.680.000274
ORF3a174G174DgGcgAc11AY.700.000209
ORF3a174G174DgGcgAc11AY.9.10.000084
ORF3a174G174DgGcgAc11AY.920.000287
ORF3a174G174DgGcgAc11AY.980.000079
ORF3a174G174DgGcgAc11AY.99.20.000092
ORF3a174G174DgGcgAc11B.1.1.100.001115
ORF3a174G174DgGcgAc11B.1.1.1980.001468
ORF3a174G174DgGcgAc11B.1.1.2160.00089
ORF3a174G174DgGcgAc11B.1.1.2200.001859
ORF3a174G174DgGcgAc11B.1.1.250.000569
ORF3a174G174DgGcgAc11B.1.1.2750.011236
ORF3a174G174DgGcgAc11B.1.1.280.000311
ORF3a174G174DgGcgAc11B.1.1.2980.000862
ORF3a174G174DgGcgAc11B.1.1.3370.003597
ORF3a174G174DgGcgAc11B.1.1.3720.000689
ORF3a174G174DgGcgAc11B.1.1.3980.003226
ORF3a174G174DgGcgAc11B.1.1.4160.000905
ORF3a174G174DgGcgAc11B.1.1.4420.018519
ORF3a174G174DgGcgAc11B.1.1.5140.038462
ORF3a174G174DgGcgAc11B.1.1.5180.006329
ORF3a174G174DgGcgAc11B.1.1.890.006061
ORF3a174G174DgGcgAc11B.1.1.990.02381
ORF3a174G174DgGcgAc11B.1.177.60.000977
ORF3a174G174DgGcgAc11B.1.230.006061
ORF3a174G174DgGcgAc11B.1.258.110.000396
ORF3a174G174DgGcgAc11B.1.360.000146
ORF3a174G174DgGcgAc11B.1.36.190.009259
ORF3a174G174DgGcgAc11B.1.3670.000792
ORF3a174G174DgGcgAc11B.1.3960.000706
ORF3a174G174DgGcgAc11B.1.3970.004854
ORF3a174G174DgGcgAc11B.1.4200.010417
ORF3a174G174DgGcgAc11B.1.4240.008065
ORF3a174G174DgGcgAc11B.1.4270.00005
ORF3a174G174DgGcgAc11B.1.4560.003268
ORF3a174G174DgGcgAc11B.1.5330.009615
ORF3a174G174DgGcgAc11B.1.5350.028571
ORF3a174G174DgGcgAc11B.1.5460.003704
ORF3a174G174DgGcgAc11B.1.5610.000397
ORF3a174G174DgGcgAc11B.1.5660.019231
ORF3a174G174DgGcgAc11B.1.5870.001898
ORF3a174G174DgGcgAc11C.36.3.10.002717
ORF3a174G174DgGcgAc11P.1.10.000318
ORF3a174G174DgGcgAc11P.1.120.000484
ORF3a174G174DgGcgAc11P.1.140.000048
ORF3a174G174DgGcgAc11P.1.160.000374
ORF3a174G174DgGcgAc11P.1.70.000319
ORF3a174G174DgGcgAc11P.60.003145
ORF3a174G174DgGcgAc11Q.30.000145
ORF3a174G174DgGcgAc11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.