CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 174 | G174D | nonsyn | gGc | gAc | 5744 | 5744 | 1 | 25912-25914 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 174 | G174D | gGc | gAc | 5744 | 5744 | All | 0.001099 |
ORF3a | 174 | G174D | gGc | gAc | 1199 | 1199 | B.1.1.348 | 0.954618 |
ORF3a | 174 | G174D | gGc | gAc | 863 | 863 | B.1.568 | 0.958889 |
ORF3a | 174 | G174D | gGc | gAc | 645 | 645 | B.1 | 0.005908 |
ORF3a | 174 | G174D | gGc | gAc | 506 | 506 | B.1.582 | 0.248283 |
ORF3a | 174 | G174D | gGc | gAc | 450 | 450 | B.1.127 | 0.989011 |
ORF3a | 174 | G174D | gGc | gAc | 449 | 449 | B.1.1.7 | 0.000402 |
ORF3a | 174 | G174D | gGc | gAc | 267 | 267 | AY.4 | 0.000416 |
ORF3a | 174 | G174D | gGc | gAc | 177 | 177 | B.1.265 | 0.224905 |
ORF3a | 174 | G174D | gGc | gAc | 152 | 152 | B.1.177 | 0.002001 |
ORF3a | 174 | G174D | gGc | gAc | 149 | 149 | B.1.243 | 0.010368 |
ORF3a | 174 | G174D | gGc | gAc | 99 | 99 | B.1.1 | 0.001796 |
ORF3a | 174 | G174D | gGc | gAc | 98 | 98 | B.1.543 | 0.98 |
ORF3a | 174 | G174D | gGc | gAc | 69 | 69 | B.1.2 | 0.000608 |
ORF3a | 174 | G174D | gGc | gAc | 48 | 48 | B.1.1.519 | 0.001906 |
ORF3a | 174 | G174D | gGc | gAc | 46 | 46 | AY.20 | 0.001788 |
ORF3a | 174 | G174D | gGc | gAc | 46 | 46 | B.1.617.2 | 0.000173 |
ORF3a | 174 | G174D | gGc | gAc | 40 | 40 | B.1.351 | 0.001189 |
ORF3a | 174 | G174D | gGc | gAc | 25 | 25 | AY.5 | 0.000516 |
ORF3a | 174 | G174D | gGc | gAc | 24 | 24 | AY.43 | 0.000106 |
ORF3a | 174 | G174D | gGc | gAc | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 174 | G174D | gGc | gAc | 19 | 19 | B.1.258 | 0.001264 |
ORF3a | 174 | G174D | gGc | gAc | 14 | 14 | B.1.177.43 | 0.020679 |
ORF3a | 174 | G174D | gGc | gAc | 13 | 13 | B.1.499 | 0.013655 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | AY.3 | 0.000119 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | AY.75 | 0.000672 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | B.1.1.291 | 0.008909 |
ORF3a | 174 | G174D | gGc | gAc | 11 | 11 | B.1.526 | 0.000259 |
ORF3a | 174 | G174D | gGc | gAc | 11 | 11 | B.1.612 | 0.029178 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | AY.23 | 0.000697 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | AY.47 | 0.000311 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | B.1.1.307 | 0.025316 |
ORF3a | 174 | G174D | gGc | gAc | 9 | 9 | AY.44 | 0.000055 |
ORF3a | 174 | G174D | gGc | gAc | 9 | 9 | P.1 | 0.000142 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | AY.54 | 0.000763 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.595 | 0.002088 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.596 | 0.000697 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.628 | 0.002819 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.637 | 0.000585 |
ORF3a | 174 | G174D | gGc | gAc | 7 | 7 | AY.102 | 0.000186 |
ORF3a | 174 | G174D | gGc | gAc | 6 | 6 | B.1.451 | 0.04918 |
ORF3a | 174 | G174D | gGc | gAc | 5 | 5 | B.1.599 | 0.018248 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | AY.120 | 0.000149 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.1.1 | 0.001307 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.1.13 | 0.142857 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.311 | 0.001098 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.180 | 0.032258 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.269 | 0.00406 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.417 | 0.008108 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | C.1 | 0.007177 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | C.37 | 0.000348 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.79 | 0.002421 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.171 | 0.007353 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.388 | 0.090909 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.462 | 0.017241 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.16 | 0.001329 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.52 | 0.003515 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.349 | 0.00143 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.36.16 | 0.002849 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.275 | 0.011236 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.514 | 0.038462 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.99 | 0.02381 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.23 | 0.006061 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.420 | 0.010417 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.424 | 0.008065 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.535 | 0.028571 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.546 | 0.003704 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.566 | 0.019231 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.6 | 0.003145 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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