CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 174 & Codon = Tgc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a174G174CnonsynGgcTgc465446290.99462825912-25914

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a174G174CGgcTgc46294654All0.000885
ORF3a174G174CGgcTgc12041205B.1.1.2220.245614
ORF3a174G174CGgcTgc793793B.1.4970.249607
ORF3a174G174CGgcTgc532555B.1.1.4320.673418
ORF3a174G174CGgcTgc287287AY.40.000447
ORF3a174G174CGgcTgc207207B.1.1.70.000185
ORF3a174G174CGgcTgc195195B.1.1.2740.984848
ORF3a174G174CGgcTgc163163B.1.10.002957
ORF3a174G174CGgcTgc153153B.1.1770.002015
ORF3a174G174CGgcTgc145146B.10.001328
ORF3a174G174CGgcTgc132132B.1.617.20.000497
ORF3a174G174CGgcTgc6060AY.430.000266
ORF3a174G174CGgcTgc5959B.1.360.008608
ORF3a174G174CGgcTgc5454B.1.1.280.016807
ORF3a174G174CGgcTgc5252B.1.4270.002626
ORF3a174G174CGgcTgc4444B.1.177.820.021002
ORF3a174G174CGgcTgc4242B.1.4700.058989
ORF3a174G174CGgcTgc3636B.1.1.10.011761
ORF3a174G174CGgcTgc2525B.1.1.330.010522
ORF3a174G174CGgcTgc1919AY.440.000116
ORF3a174G174CGgcTgc1919B.1.1.2410.039337
ORF3a174G174CGgcTgc1818AY.90.001217
ORF3a174G174CGgcTgc1616AY.3.10.001364
ORF3a174G174CGgcTgc1616AY.610.001676
ORF3a174G174CGgcTgc1414B.1.1.370.0027
ORF3a174G174CGgcTgc1414B.1.177.770.010167
ORF3a174G174CGgcTgc1313AY.46.40.002139
ORF3a174G174CGgcTgc1313B.1.1790.048872
ORF3a174G174CGgcTgc1212AY.1020.000318
ORF3a174G174CGgcTgc1212AY.200.000466
ORF3a174G174CGgcTgc1111AY.260.000311
ORF3a174G174CGgcTgc1010B.1.4990.010504
ORF3a174G174CGgcTgc99AY.590.004767
ORF3a174G174CGgcTgc99B.1.160.300.026786
ORF3a174G174CGgcTgc88B.1.1.3160.007401
ORF3a174G174CGgcTgc88B.1.4290.000188
ORF3a174G174CGgcTgc77AY.1000.000322
ORF3a174G174CGgcTgc77AY.4.20.000152
ORF3a174G174CGgcTgc77B.1.1110.008226
ORF3a174G174CGgcTgc77B.1.2370.034826
ORF3a174G174CGgcTgc77B.1.90.04321
ORF3a174G174CGgcTgc66AY.30.00006
ORF3a174G174CGgcTgc66AY.99.20.000553
ORF3a174G174CGgcTgc66B.1.1.4270.857143
ORF3a174G174CGgcTgc66P.10.000095
ORF3a174G174CGgcTgc55AY.1130.000712
ORF3a174G174CGgcTgc55B.1.1.2140.000277
ORF3a174G174CGgcTgc55B.1.1.4310.080645
ORF3a174G174CGgcTgc55B.1.2580.000333
ORF3a174G174CGgcTgc44AY.330.000267
ORF3a174G174CGgcTgc44AY.50.000083
ORF3a174G174CGgcTgc44AY.5.40.001107
ORF3a174G174CGgcTgc44AY.60.000165
ORF3a174G174CGgcTgc44AY.9.20.000147
ORF3a174G174CGgcTgc44B.1.1.2200.007435
ORF3a174G174CGgcTgc44B.1.1.5190.000159
ORF3a174G174CGgcTgc44B.1.466.20.001565
ORF3a174G174CGgcTgc44B.1.5960.000349
ORF3a174G174CGgcTgc33AY.1030.000019
ORF3a174G174CGgcTgc33AY.120.000948
ORF3a174G174CGgcTgc33B.1.1.2370.016216
ORF3a174G174CGgcTgc33B.1.1.5170.020408
ORF3a174G174CGgcTgc33B.1.20.000026
ORF3a174G174CGgcTgc33B.1.36.220.003623
ORF3a174G174CGgcTgc33B.1.6090.001438
ORF3a174G174CGgcTgc22AY.1200.000074
ORF3a174G174CGgcTgc22AY.250.000012
ORF3a174G174CGgcTgc22AY.340.000194
ORF3a174G174CGgcTgc22AY.390.000049
ORF3a174G174CGgcTgc22AY.75.10.000361
ORF3a174G174CGgcTgc22AY.990.002099
ORF3a174G174CGgcTgc22B.1.1.1980.002937
ORF3a174G174CGgcTgc22B.1.1.500.001358
ORF3a174G174CGgcTgc22B.1.1600.000062
ORF3a174G174CGgcTgc22B.1.177.80.001505
ORF3a174G174CGgcTgc22B.1.2450.0625
ORF3a174G174CGgcTgc22B.1.2640.024691
ORF3a174G174CGgcTgc22B.1.2890.005319
ORF3a174G174CGgcTgc22B.1.36.310.003503
ORF3a174G174CGgcTgc22B.1.36.80.002
ORF3a174G174CGgcTgc22B.1.3960.001411
ORF3a174G174CGgcTgc22B.1.3980.005952
ORF3a174G174CGgcTgc22B.1.5250.000226
ORF3a174G174CGgcTgc22B.1.5260.000047
ORF3a174G174CGgcTgc22B.1.5950.000522
ORF3a174G174CGgcTgc22Q.80.00033
ORF3a174G174CGgcTgc11A0.000387
ORF3a174G174CGgcTgc11A.23.10.000704
ORF3a174G174CGgcTgc11AY.1160.000287
ORF3a174G174CGgcTgc11AY.1170.000085
ORF3a174G174CGgcTgc11AY.1180.000063
ORF3a174G174CGgcTgc11AY.1210.000135
ORF3a174G174CGgcTgc11AY.16.10.00047
ORF3a174G174CGgcTgc11AY.23.10.000417
ORF3a174G174CGgcTgc11AY.290.000016
ORF3a174G174CGgcTgc11AY.300.000396
ORF3a174G174CGgcTgc11AY.370.000316
ORF3a174G174CGgcTgc11AY.460.000104
ORF3a174G174CGgcTgc11AY.530.000288
ORF3a174G174CGgcTgc11AY.670.000464
ORF3a174G174CGgcTgc11AY.7.10.000113
ORF3a174G174CGgcTgc11AY.99.10.001553
ORF3a174G174CGgcTgc11AZ.20.000821
ORF3a174G174CGgcTgc11B.1.1.100.001115
ORF3a174G174CGgcTgc11B.1.1.1090.04
ORF3a174G174CGgcTgc11B.1.1.2290.005747
ORF3a174G174CGgcTgc11B.1.1.2440.015385
ORF3a174G174CGgcTgc11B.1.1.2770.000759
ORF3a174G174CGgcTgc11B.1.1.3060.000438
ORF3a174G174CGgcTgc11B.1.1.3260.001761
ORF3a174G174CGgcTgc11B.1.1.3440.010753
ORF3a174G174CGgcTgc11B.1.1.3780.007299
ORF3a174G174CGgcTgc11B.1.1.4160.000905
ORF3a174G174CGgcTgc11B.1.1.4580.041667
ORF3a174G174CGgcTgc11B.1.1390.000733
ORF3a174G174CGgcTgc11B.1.177.860.000183
ORF3a174G174CGgcTgc11B.1.2180.005155
ORF3a174G174CGgcTgc11B.1.258.170.000104
ORF3a174G174CGgcTgc11B.1.3510.00003
ORF3a174G174CGgcTgc11B.1.351.30.000876
ORF3a174G174CGgcTgc11B.1.3540.043478
ORF3a174G174CGgcTgc11B.1.36.170.000494
ORF3a174G174CGgcTgc11B.1.3970.004854
ORF3a174G174CGgcTgc11B.1.438.10.000107
ORF3a174G174CGgcTgc11B.1.4980.020408
ORF3a174G174CGgcTgc11B.1.5240.001406
ORF3a174G174CGgcTgc11B.1.6210.000089
ORF3a174G174CGgcTgc11B.1.621.10.000506
ORF3a174G174CGgcTgc11B.1.6230.000536
ORF3a174G174CGgcTgc11C.230.005814
ORF3a174G174CGgcTgc11C.40.01
ORF3a174G174CGgcTgc11L.30.003546
ORF3a174G174CGgcTgc11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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