CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 174

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a174G174DnonsyngGcgAc57445744125912-25914
ORF3a174G174CnonsynGgcTgc465446290.99462825912-25914
ORF3a174G174CnonsynGgCTgT4654250.0053717225912-25914
ORF3a174G174VnonsyngGcgTc286428630.99965125912-25914
ORF3a174G174VnonsyngGCgTT286410.00034916225912-25914
ORF3a174G174SnonsynGgcAgc119611950.99916425912-25914
ORF3a174G174SnonsynGgCAgT119610.0008361225912-25914
ORF3a174G174AnonsyngGcgCc193193125912-25914
ORF3a174G174GsynggCggT131990.75572525912-25914
ORF3a174G174GsynggCggA131280.2137425912-25914
ORF3a174G174GsynggCggG13140.030534425912-25914
ORF3a174G174deldelGGC---4343125912-25914
ORF3a174G174NnonsynGGCAAT1414125912-25914
ORF3a174G174del1delggCgg-1360.46153825912-25914
ORF3a174G174del1delGgc-gc1350.38461525912-25914
ORF3a174G174del1delGGC-NN1310.076923125912-25914
ORF3a174G174del1delGGC-CA1310.076923125912-25914
ORF3a174G174FnonsynGGcTTc66125912-25914
ORF3a174G174RnonsynGgcCgc22125912-25914
ORF3a174G174PnonsynGGcCCc11125912-25914
ORF3a174G174WnonsynGgCTgG11125912-25914
ORF3a174G174InonsynGGcATc11125912-25914

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a174G174DgGcgAc57445744All0.001099
ORF3a174G174CGgcTgc46294654All0.000885
ORF3a174G174CGgCTgT254654All0.000005
ORF3a174G174VgGcgTc28632864All0.000548
ORF3a174G174VgGCgTT12864All0
ORF3a174G174CGgcTgc12041205B.1.1.2220.245614
ORF3a174G174CGgCTgT11205B.1.1.2220.000204
ORF3a174G174DgGcgAc11991199B.1.1.3480.954618
ORF3a174G174SGgcAgc11951196All0.000229
ORF3a174G174SGgCAgT11196All0
ORF3a174G174VgGcgTc11611161AY.250.006983
ORF3a174G174DgGcgAc863863B.1.5680.958889
ORF3a174G174CGgcTgc793793B.1.4970.249607
ORF3a174G174SGgcAgc681681B.1.4290.016023
ORF3a174G174VgGcgTc664664B.10.006082
ORF3a174G174DgGcgAc645645B.10.005908
ORF3a174G174CGgcTgc532555B.1.1.4320.673418
ORF3a174G174CGgCTgT23555B.1.1.4320.029114
ORF3a174G174DgGcgAc506506B.1.5820.248283
ORF3a174G174DgGcgAc450450B.1.1270.989011
ORF3a174G174DgGcgAc449449B.1.1.70.000402
ORF3a174G174CGgcTgc287287AY.40.000447
ORF3a174G174DgGcgAc267267AY.40.000416
ORF3a174G174VgGcgTc220220B.1.1.2220.04488
ORF3a174G174CGgcTgc207207B.1.1.70.000185
ORF3a174G174VgGcgTc202202B.1.1.390.102956
ORF3a174G174CGgcTgc195195B.1.1.2740.984848
ORF3a174G174AgGcgCc193193All0.000037
ORF3a174G174DgGcgAc177177B.1.2650.224905
ORF3a174G174VgGcgTc171171B.1.360.024949
ORF3a174G174CGgcTgc163163B.1.10.002957
ORF3a174G174CGgcTgc153153B.1.1770.002015
ORF3a174G174DgGcgAc152152B.1.1770.002001
ORF3a174G174DgGcgAc149149B.1.2430.010368
ORF3a174G174CGgcTgc145146B.10.001328
ORF3a174G174CGgCTgT1146B.10.000009
ORF3a174G174SGgcAgc145145B.1.1.70.00013
ORF3a174G174CGgcTgc132132B.1.617.20.000497
ORF3a174G174GggCggT99131All0.000019
ORF3a174G174GggCggA28131All0.000005
ORF3a174G174GggCggG4131All0.000001
ORF3a174G174VgGcgTc122122B.1.1.70.000109
ORF3a174G174SGgcAgc116116AY.690.021654
ORF3a174G174DgGcgAc9999B.1.10.001796
ORF3a174G174DgGcgAc9898B.1.5430.98
ORF3a174G174DgGcgAc6969B.1.20.000608
ORF3a174G174CGgcTgc6060AY.430.000266
ORF3a174G174CGgcTgc5959B.1.360.008608
ORF3a174G174CGgcTgc5454B.1.1.280.016807
ORF3a174G174CGgcTgc5252B.1.4270.002626
ORF3a174G174DgGcgAc4848B.1.1.5190.001906
ORF3a174G174SGgcAgc4747B.1.5260.001105
ORF3a174G174DgGcgAc4646AY.200.001788
ORF3a174G174DgGcgAc4646B.1.617.20.000173
ORF3a174G174VgGcgTc4545B.1.10.000816
ORF3a174G174AgGcgCc4444B.10.000403
ORF3a174G174CGgcTgc4444B.1.177.820.021002
ORF3a174G174delGGC---4343All0.000008
ORF3a174G174SGgcAgc4243B.1.1770.000553
ORF3a174G174SGgCAgT143B.1.1770.000013
ORF3a174G174CGgcTgc4242B.1.4700.058989
ORF3a174G174AgGcgCc4141B.1.1.610.359649
ORF3a174G174DgGcgAc4040B.1.3510.001189
ORF3a174G174CGgcTgc3636B.1.1.10.011761
ORF3a174G174VgGcgTc2627B.1.617.20.000098
ORF3a174G174VgGCgTT127B.1.617.20.000004
ORF3a174G174DgGcgAc2525AY.50.000516
ORF3a174G174CGgcTgc2525B.1.1.330.010522
ORF3a174G174DgGcgAc2424AY.430.000106
ORF3a174G174VgGcgTc2121A.23.10.014789
ORF3a174G174SGgcAgc2121AY.250.000126
ORF3a174G174DgGcgAc2121AY.390.000519
ORF3a174G174GggCggT2020AY.60.000823
ORF3a174G174CGgcTgc1919AY.440.000116
ORF3a174G174CGgcTgc1919B.1.1.2410.039337
ORF3a174G174DgGcgAc1919B.1.2580.001264
ORF3a174G174VgGcgTc1818AY.40.000028
ORF3a174G174SGgcAgc1818AY.40.000028
ORF3a174G174CGgcTgc1818AY.90.001217
ORF3a174G174AgGcgCc1717B.1.1.1720.309091
ORF3a174G174AgGcgCc1717B.1.3200.021171
ORF3a174G174SGgcAgc1717P.1.140.000813
ORF3a174G174CGgcTgc1616AY.3.10.001364
ORF3a174G174CGgcTgc1616AY.610.001676
ORF3a174G174VgGcgTc1515AY.440.000091
ORF3a174G174AgGcgCc1515B.1.80.029586
ORF3a174G174NGGCAAT1414All0.000003
ORF3a174G174NGGCAAT1414AY.440.000085
ORF3a174G174CGgcTgc1414B.1.1.370.0027
ORF3a174G174DgGcgAc1414B.1.177.430.020679
ORF3a174G174CGgcTgc1414B.1.177.770.010167
ORF3a174G174SGgcAgc1414B.1.5610.005558
ORF3a174G174del1ggCgg-613All0.000001
ORF3a174G174del1Ggc-gc513All0.000001
ORF3a174G174del1GGC-CA113All0
ORF3a174G174del1GGC-NN113All0
ORF3a174G174CGgcTgc1313AY.46.40.002139
ORF3a174G174SGgcAgc1313B.1.160.160.012082
ORF3a174G174CGgcTgc1313B.1.1790.048872
ORF3a174G174DgGcgAc1313B.1.4990.013655
ORF3a174G174CGgcTgc1212AY.1020.000318
ORF3a174G174CGgcTgc1212AY.200.000466
ORF3a174G174DgGcgAc1212AY.30.000119
ORF3a174G174SGgcAgc1212AY.39.10.000475
ORF3a174G174DgGcgAc1212AY.750.000672
ORF3a174G174DgGcgAc1212B.1.1.2910.008909
ORF3a174G174CGgcTgc1111AY.260.000311
ORF3a174G174GggCggT1111B.1.1600.000343
ORF3a174G174DgGcgAc1111B.1.5260.000259
ORF3a174G174DgGcgAc1111B.1.6120.029178
ORF3a174G174DgGcgAc1010AY.230.000697
ORF3a174G174DgGcgAc1010AY.470.000311
ORF3a174G174SGgcAgc1010B.10.000092
ORF3a174G174AgGcgCc1010B.1.10.000181
ORF3a174G174DgGcgAc1010B.1.1.3070.025316
ORF3a174G174delGGC---1010B.1.1.70.000009
ORF3a174G174GggCggT610B.1.1.70.000005
ORF3a174G174GggCggA310B.1.1.70.000003
ORF3a174G174GggCggG110B.1.1.70.000001
ORF3a174G174CGgcTgc1010B.1.4990.010504
ORF3a174G174DgGcgAc99AY.440.000055
ORF3a174G174CGgcTgc99AY.590.004767
ORF3a174G174CGgcTgc99B.1.160.300.026786
ORF3a174G174VgGcgTc99B.1.4250.026946
ORF3a174G174DgGcgAc99P.10.000142
ORF3a174G174VgGcgTc88AY.1020.000212
ORF3a174G174VgGcgTc88AY.1030.00005
ORF3a174G174DgGcgAc88AY.250.000048
ORF3a174G174GggCggT88AY.40.000012
ORF3a174G174GggCggT88AY.440.000049
ORF3a174G174DgGcgAc88AY.540.000763
ORF3a174G174CGgcTgc88B.1.1.3160.007401
ORF3a174G174GggCggA88B.1.2340.001056
ORF3a174G174VgGcgTc88B.1.3360.019512
ORF3a174G174CGgcTgc88B.1.4290.000188
ORF3a174G174DgGcgAc88B.1.5950.002088
ORF3a174G174DgGcgAc88B.1.5960.000697
ORF3a174G174DgGcgAc88B.1.6280.002819
ORF3a174G174DgGcgAc88B.1.6370.000585
ORF3a174G174CGgcTgc77AY.1000.000322
ORF3a174G174DgGcgAc77AY.1020.000186
ORF3a174G174VgGcgTc77AY.300.00277
ORF3a174G174VgGcgTc77AY.390.000173
ORF3a174G174CGgcTgc77AY.4.20.000152
ORF3a174G174VgGcgTc77B.1.1.10.002287
ORF3a174G174AgGcgCc77B.1.1.70.000006
ORF3a174G174CGgcTgc77B.1.1110.008226
ORF3a174G174CGgcTgc77B.1.2370.034826
ORF3a174G174VgGcgTc77B.1.4560.022876
ORF3a174G174SGgcAgc77B.1.617.20.000026
ORF3a174G174CGgcTgc77B.1.90.04321
ORF3a174G174SGgcAgc66A.23.10.004225
ORF3a174G174FGGcTTc66All0.000001
ORF3a174G174CGgcTgc66AY.30.00006
ORF3a174G174CGgcTgc66AY.99.20.000553
ORF3a174G174FGGcTTc66B.10.000055
ORF3a174G174GggCggT66B.1.10.000109
ORF3a174G174CGgcTgc66B.1.1.4270.857143
ORF3a174G174VgGcgTc66B.1.1770.000079
ORF3a174G174VgGcgTc66B.1.36.220.007246
ORF3a174G174VgGcgTc66B.1.4410.057692
ORF3a174G174DgGcgAc66B.1.4510.04918
ORF3a174G174CGgcTgc66P.10.000095
ORF3a174G174CGgcTgc55AY.1130.000712
ORF3a174G174delGGC---55AY.430.000022
ORF3a174G174AgGcgCc55B.1.1.1320.074627
ORF3a174G174CGgcTgc55B.1.1.2140.000277
ORF3a174G174CGgcTgc55B.1.1.4310.080645
ORF3a174G174VgGcgTc55B.1.2100.010661
ORF3a174G174CGgcTgc55B.1.2580.000333
ORF3a174G174del1Ggc-gc45B.1.360.000584
ORF3a174G174del1ggCgg-15B.1.360.000146
ORF3a174G174SGgcAgc55B.1.4270.000252
ORF3a174G174AgGcgCc55B.1.5080.128205
ORF3a174G174DgGcgAc55B.1.5990.018248
ORF3a174G174AgGcgCc44A.10.001127
ORF3a174G174DgGcgAc44AY.1030.000025
ORF3a174G174DgGcgAc44AY.1200.000149
ORF3a174G174GggCggT24AY.250.000012
ORF3a174G174GggCggA14AY.250.000006
ORF3a174G174GggCggG14AY.250.000006
ORF3a174G174CGgcTgc44AY.330.000267
ORF3a174G174GggCggT44AY.420.000161
ORF3a174G174VgGcgTc44AY.430.000018
ORF3a174G174CGgcTgc44AY.50.000083
ORF3a174G174CGgcTgc44AY.5.40.001107
ORF3a174G174CGgcTgc44AY.60.000165
ORF3a174G174GggCggA44AY.790.004843
ORF3a174G174CGgcTgc44AY.9.20.000147
ORF3a174G174delGGC---44B.10.000037
ORF3a174G174DgGcgAc44B.1.1.10.001307
ORF3a174G174DgGcgAc44B.1.1.130.142857
ORF3a174G174CGgcTgc44B.1.1.2200.007435
ORF3a174G174VgGcgTc44B.1.1.460.017467
ORF3a174G174CGgcTgc44B.1.1.5190.000159
ORF3a174G174AgGcgCc44B.1.20.000035
ORF3a174G174DgGcgAc44B.1.3110.001098
ORF3a174G174VgGcgTc44B.1.4330.01278
ORF3a174G174CGgcTgc44B.1.466.20.001565
ORF3a174G174SGgcAgc44B.1.466.20.001565
ORF3a174G174CGgcTgc44B.1.5960.000349
ORF3a174G174delGGC---44B.1.617.20.000015
ORF3a174G174VgGcgTc44C.350.003096
ORF3a174G174VgGcgTc44C.370.000464
ORF3a174G174GggCggT33AY.1030.000019
ORF3a174G174CGgcTgc33AY.1030.000019
ORF3a174G174CGgcTgc33AY.120.000948
ORF3a174G174SGgcAgc33AY.30.00003
ORF3a174G174VgGcgTc33AY.320.001597
ORF3a174G174GggCggT33AY.360.000445
ORF3a174G174VgGcgTc33AY.580.002722
ORF3a174G174VgGcgTc33AY.720.004082
ORF3a174G174SGgcAgc33AY.90.000203
ORF3a174G174GggCggG13B.10.000009
ORF3a174G174GggCggA13B.10.000009
ORF3a174G174GggCggT13B.10.000009
ORF3a174G174DgGcgAc33B.1.1.1800.032258
ORF3a174G174VgGcgTc33B.1.1.2070.003546
ORF3a174G174CGgcTgc33B.1.1.2370.016216
ORF3a174G174DgGcgAc33B.1.1.2690.00406
ORF3a174G174VgGcgTc33B.1.1.3970.006757
ORF3a174G174DgGcgAc33B.1.1.4170.008108
ORF3a174G174CGgcTgc33B.1.1.5170.020408
ORF3a174G174VgGcgTc33B.1.1110.003525
ORF3a174G174VgGcgTc33B.1.1600.000094
ORF3a174G174SGgcAgc33B.1.20.000026
ORF3a174G174CGgcTgc33B.1.20.000026
ORF3a174G174CGgcTgc33B.1.36.220.003623
ORF3a174G174DgGcgAc33B.1.36.220.003623
ORF3a174G174DgGcgAc33B.1.4290.000071
ORF3a174G174DgGcgAc33B.1.5750.00091
ORF3a174G174CGgcTgc33B.1.6090.001438
ORF3a174G174DgGcgAc33B.1.617.10.000387
ORF3a174G174DgGcgAc33C.10.007177
ORF3a174G174VgGcgTc33C.160.003181
ORF3a174G174DgGcgAc33C.370.000348
ORF3a174G174GggCggA33P.10.000047
ORF3a174G174DgGcgAc33P.1.150.000697
ORF3a174G174GggCggT33P.20.00056
ORF3a174G174del1ggCgg-220.111111
ORF3a174G174RGgcCgc22All0
ORF3a174G174SGgcAgc22AY.1030.000012
ORF3a174G174DgGcgAc22AY.1170.000169
ORF3a174G174SGgcAgc22AY.1190.000071
ORF3a174G174CGgcTgc22AY.1200.000074
ORF3a174G174VgGcgTc22AY.120.2.10.000997
ORF3a174G174DgGcgAc22AY.140.000176
ORF3a174G174CGgcTgc22AY.250.000012
ORF3a174G174GggCggT22AY.30.00002
ORF3a174G174SGgcAgc22AY.330.000134
ORF3a174G174CGgcTgc22AY.340.000194
ORF3a174G174AgGcgCc22AY.34.10.00102
ORF3a174G174CGgcTgc22AY.390.000049
ORF3a174G174VgGcgTc22AY.5.40.000553
ORF3a174G174SGgcAgc22AY.560.00321
ORF3a174G174CGgcTgc22AY.75.10.000361
ORF3a174G174DgGcgAc22AY.790.002421
ORF3a174G174SGgcAgc22AY.850.000854
ORF3a174G174CGgcTgc22AY.990.002099
ORF3a174G174DgGcgAc22B.1.1.1710.007353
ORF3a174G174DgGcgAc22B.1.1.1740.006757
ORF3a174G174CGgcTgc22B.1.1.1980.002937
ORF3a174G174DgGcgAc22B.1.1.2220.000408
ORF3a174G174VgGcgTc22B.1.1.3060.000877
ORF3a174G174DgGcgAc22B.1.1.3180.000604
ORF3a174G174DgGcgAc22B.1.1.370.000386
ORF3a174G174DgGcgAc22B.1.1.3880.090909
ORF3a174G174DgGcgAc22B.1.1.4090.005666
ORF3a174G174DgGcgAc22B.1.1.4620.017241
ORF3a174G174CGgcTgc22B.1.1.500.001358
ORF3a174G174VgGcgTc22B.1.1.500.001358
ORF3a174G174GggCggA22B.1.1.5190.000079
ORF3a174G174VgGcgTc22B.1.1.700.000682
ORF3a174G174VgGcgTc22B.1.1430.042553
ORF3a174G174CGgcTgc22B.1.1600.000062
ORF3a174G174VgGcgTc22B.1.160.320.008584
ORF3a174G174delGGC---22B.1.1770.000026
ORF3a174G174DgGcgAc22B.1.177.160.001329
ORF3a174G174DgGcgAc22B.1.177.520.003515
ORF3a174G174DgGcgAc22B.1.177.570.000562
ORF3a174G174CGgcTgc22B.1.177.80.001505
ORF3a174G174AgGcgCc22B.1.2430.000139
ORF3a174G174CGgcTgc22B.1.2450.0625
ORF3a174G174CGgcTgc22B.1.2640.024691
ORF3a174G174CGgcTgc22B.1.2890.005319
ORF3a174G174VgGcgTc22B.1.2980.004228
ORF3a174G174DgGcgAc22B.1.3490.00143
ORF3a174G174DgGcgAc22B.1.36.160.002849
ORF3a174G174CGgcTgc22B.1.36.310.003503
ORF3a174G174CGgcTgc22B.1.36.80.002
ORF3a174G174VgGcgTc22B.1.36.80.002
ORF3a174G174VgGcgTc22B.1.3880.181818
ORF3a174G174CGgcTgc22B.1.3960.001411
ORF3a174G174CGgcTgc22B.1.3980.005952
ORF3a174G174AgGcgCc22B.1.4270.000101
ORF3a174G174VgGcgTc22B.1.4290.000047
ORF3a174G174DgGcgAc22B.1.4590.008163
ORF3a174G174CGgcTgc22B.1.5250.000226
ORF3a174G174CGgcTgc22B.1.5260.000047
ORF3a174G174SGgcAgc22B.1.5550.044444
ORF3a174G174CGgcTgc22B.1.5950.000522
ORF3a174G174DgGcgAc22B.1.6090.000959
ORF3a174G174GggCggA12B.1.617.20.000004
ORF3a174G174GggCggT12B.1.617.20.000004
ORF3a174G174DgGcgAc22B.1.6200.001892
ORF3a174G174SGgcAgc22P.10.000032
ORF3a174G174SGgcAgc22P.1.170.000324
ORF3a174G174DgGcgAc22Q.10.000253
ORF3a174G174CGgcTgc22Q.80.00033
ORF3a174G174CGgcTgc11A0.000387
ORF3a174G174VgGcgTc11A.20.000662
ORF3a174G174VgGcgTc11A.2.5.20.001572
ORF3a174G174CGgcTgc11A.23.10.000704
ORF3a174G174GggCggT11A.50.001923
ORF3a174G174WGgCTgG11All0
ORF3a174G174PGGcCCc11All0
ORF3a174G174IGGcATc11All0
ORF3a174G174DgGcgAc11AY.1000.000046
ORF3a174G174SGgcAgc11AY.1000.000046
ORF3a174G174GggCggT11AY.1010.00049
ORF3a174G174VgGcgTc11AY.1050.000643
ORF3a174G174DgGcgAc11AY.1070.000466
ORF3a174G174AgGcgCc11AY.1080.001103
ORF3a174G174DgGcgAc11AY.1100.000113
ORF3a174G174SGgcAgc11AY.1130.000142
ORF3a174G174DgGcgAc11AY.1130.000142
ORF3a174G174DgGcgAc11AY.1160.000287
ORF3a174G174CGgcTgc11AY.1160.000287
ORF3a174G174DgGcgAc11AY.116.10.000311
ORF3a174G174VgGcgTc11AY.1170.000085
ORF3a174G174CGgcTgc11AY.1170.000085
ORF3a174G174SGgcAgc11AY.1170.000085
ORF3a174G174VgGcgTc11AY.1180.000063
ORF3a174G174delGGC---11AY.1180.000063
ORF3a174G174CGgcTgc11AY.1180.000063
ORF3a174G174VgGcgTc11AY.1190.000035
ORF3a174G174delGGC---11AY.1200.000037
ORF3a174G174CGgcTgc11AY.1210.000135
ORF3a174G174DgGcgAc11AY.130.000161
ORF3a174G174del1Ggc-gc11AY.160.00038
ORF3a174G174CGgcTgc11AY.16.10.00047
ORF3a174G174GggCggT11AY.190.00114
ORF3a174G174RGgcCgc11AY.200.000039
ORF3a174G174CGgcTgc11AY.23.10.000417
ORF3a174G174DgGcgAc11AY.240.000431
ORF3a174G174AgGcgCc11AY.260.000028
ORF3a174G174GggCggT11AY.270.000065
ORF3a174G174CGgcTgc11AY.290.000016
ORF3a174G174AgGcgCc11AY.30.00001
ORF3a174G174AgGcgCc11AY.300.000396
ORF3a174G174CGgcTgc11AY.300.000396
ORF3a174G174VgGcgTc11AY.330.000067
ORF3a174G174DgGcgAc11AY.34.10.00051
ORF3a174G174CGgcTgc11AY.370.000316
ORF3a174G174AgGcgCc11AY.390.000025
ORF3a174G174GggCggT11AY.390.000025
ORF3a174G174GggCggA11AY.39.10.00004
ORF3a174G174DgGcgAc11AY.39.10.00004
ORF3a174G174DgGcgAc11AY.39.20.001541
ORF3a174G174RGgcCgc11AY.40.000002
ORF3a174G174GggCggT11AY.4.20.000022
ORF3a174G174VgGcgTc11AY.4.20.000022
ORF3a174G174AgGcgCc11AY.4.20.000022
ORF3a174G174delGGC---11AY.4.50.000107
ORF3a174G174DgGcgAc11AY.420.00004
ORF3a174G174GggCggT11AY.430.000004
ORF3a174G174VgGcgTc11AY.450.000122
ORF3a174G174CGgcTgc11AY.460.000104
ORF3a174G174VgGcgTc11AY.460.000104
ORF3a174G174GggCggT11AY.470.000031
ORF3a174G174DgGcgAc11AY.5.40.000277
ORF3a174G174CGgcTgc11AY.530.000288
ORF3a174G174GggCggT11AY.590.00053
ORF3a174G174VgGcgTc11AY.60.000041
ORF3a174G174del1ggCgg-11AY.670.000464
ORF3a174G174CGgcTgc11AY.670.000464
ORF3a174G174VgGcgTc11AY.680.000274
ORF3a174G174delGGC---11AY.680.000274
ORF3a174G174DgGcgAc11AY.680.000274
ORF3a174G174CGgcTgc11AY.7.10.000113
ORF3a174G174delGGC---11AY.7.20.000559
ORF3a174G174DgGcgAc11AY.700.000209
ORF3a174G174GggCggT11AY.740.000116
ORF3a174G174SGgcAgc11AY.750.000056
ORF3a174G174VgGcgTc11AY.750.000056
ORF3a174G174GggCggT11AY.750.000056
ORF3a174G174GggCggT11AY.75.10.00018
ORF3a174G174DgGcgAc11AY.9.10.000084
ORF3a174G174VgGcgTc11AY.9.20.000037
ORF3a174G174VgGcgTc11AY.900.000684
ORF3a174G174DgGcgAc11AY.920.000287
ORF3a174G174GggCggT11AY.980.000079
ORF3a174G174DgGcgAc11AY.980.000079
ORF3a174G174delGGC---11AY.98.10.000048
ORF3a174G174VgGcgTc11AY.98.10.000048
ORF3a174G174GggCggT11AY.98.10.000048
ORF3a174G174CGgcTgc11AY.99.10.001553
ORF3a174G174DgGcgAc11AY.99.20.000092
ORF3a174G174GggCggT11AY.99.20.000092
ORF3a174G174CGgcTgc11AZ.20.000821
ORF3a174G174VgGcgTc11B0.000128
ORF3a174G174AgGcgCc11B0.000128
ORF3a174G174del1ggCgg-11B0.000128
ORF3a174G174IGGcATc11B.10.000009
ORF3a174G174PGGcCCc11B.1.10.000018
ORF3a174G174SGgcAgc11B.1.10.000018
ORF3a174G174CGgcTgc11B.1.1.100.001115
ORF3a174G174DgGcgAc11B.1.1.100.001115
ORF3a174G174CGgcTgc11B.1.1.1090.04
ORF3a174G174DgGcgAc11B.1.1.1980.001468
ORF3a174G174delGGC---11B.1.1.2140.000055
ORF3a174G174VgGcgTc11B.1.1.2140.000055
ORF3a174G174DgGcgAc11B.1.1.2160.00089
ORF3a174G174DgGcgAc11B.1.1.2200.001859
ORF3a174G174CGgcTgc11B.1.1.2290.005747
ORF3a174G174CGgcTgc11B.1.1.2440.015385
ORF3a174G174DgGcgAc11B.1.1.250.000569
ORF3a174G174DgGcgAc11B.1.1.2750.011236
ORF3a174G174CGgcTgc11B.1.1.2770.000759
ORF3a174G174DgGcgAc11B.1.1.280.000311
ORF3a174G174DgGcgAc11B.1.1.2980.000862
ORF3a174G174GggCggT11B.1.1.3020.002075
ORF3a174G174CGgcTgc11B.1.1.3060.000438
ORF3a174G174VgGcgTc11B.1.1.3110.000358
ORF3a174G174SGgcAgc11B.1.1.3110.000358
ORF3a174G174VgGcgTc11B.1.1.3220.008772
ORF3a174G174CGgcTgc11B.1.1.3260.001761
ORF3a174G174DgGcgAc11B.1.1.3370.003597
ORF3a174G174CGgcTgc11B.1.1.3440.010753
ORF3a174G174AgGcgCc11B.1.1.3440.010753
ORF3a174G174VgGcgTc11B.1.1.3720.000689
ORF3a174G174DgGcgAc11B.1.1.3720.000689
ORF3a174G174CGgcTgc11B.1.1.3780.007299
ORF3a174G174GggCggT11B.1.1.3980.003226
ORF3a174G174DgGcgAc11B.1.1.3980.003226
ORF3a174G174del1GGC-CA11B.1.1.4090.002833
ORF3a174G174DgGcgAc11B.1.1.4160.000905
ORF3a174G174CGgcTgc11B.1.1.4160.000905
ORF3a174G174DgGcgAc11B.1.1.4420.018519
ORF3a174G174CGgcTgc11B.1.1.4580.041667
ORF3a174G174VgGcgTc11B.1.1.5000.02
ORF3a174G174DgGcgAc11B.1.1.5140.038462
ORF3a174G174DgGcgAc11B.1.1.5180.006329
ORF3a174G174VgGcgTc11B.1.1.5190.00004
ORF3a174G174GggCggG11B.1.1.540.003021
ORF3a174G174DgGcgAc11B.1.1.890.006061
ORF3a174G174DgGcgAc11B.1.1.990.02381
ORF3a174G174AgGcgCc11B.1.1100.004525
ORF3a174G174AgGcgCc11B.1.1260.001276
ORF3a174G174VgGcgTc11B.1.1280.000635
ORF3a174G174CGgcTgc11B.1.1390.000733
ORF3a174G174GggCggA11B.1.1570.002985
ORF3a174G174SGgcAgc11B.1.1600.000031
ORF3a174G174delGGC---11B.1.1600.000031
ORF3a174G174SGgcAgc11B.1.177.190.001431
ORF3a174G174GggCggT11B.1.177.440.000519
ORF3a174G174delGGC---11B.1.177.510.004566
ORF3a174G174DgGcgAc11B.1.177.60.000977
ORF3a174G174GggCggT11B.1.177.650.000665
ORF3a174G174CGgcTgc11B.1.177.860.000183
ORF3a174G174delGGC---11B.1.177.90.001332
ORF3a174G174GggCggA11B.1.20.000009
ORF3a174G174WGgCTgG11B.1.20.000009
ORF3a174G174VgGcgTc11B.1.20.000009
ORF3a174G174CGgcTgc11B.1.2180.005155
ORF3a174G174delGGC---11B.1.2210.000071
ORF3a174G174DgGcgAc11B.1.230.006061
ORF3a174G174VgGcgTc11B.1.2360.002053
ORF3a174G174VgGcgTc11B.1.2430.00007
ORF3a174G174VgGcgTc11B.1.2580.000067
ORF3a174G174GggCggA11B.1.2580.000067
ORF3a174G174DgGcgAc11B.1.258.110.000396
ORF3a174G174delGGC---11B.1.258.160.001637
ORF3a174G174CGgcTgc11B.1.258.170.000104
ORF3a174G174SGgcAgc11B.1.3240.001605
ORF3a174G174AgGcgCc11B.1.3240.001605
ORF3a174G174AgGcgCc11B.1.3360.002439
ORF3a174G174VgGcgTc11B.1.3490.000715
ORF3a174G174CGgcTgc11B.1.3510.00003
ORF3a174G174CGgcTgc11B.1.351.30.000876
ORF3a174G174CGgcTgc11B.1.3540.043478
ORF3a174G174DgGcgAc11B.1.360.000146
ORF3a174G174VgGcgTc11B.1.36.100.004785
ORF3a174G174VgGcgTc11B.1.36.170.000494
ORF3a174G174CGgcTgc11B.1.36.170.000494
ORF3a174G174DgGcgAc11B.1.36.190.009259
ORF3a174G174DgGcgAc11B.1.3670.000792
ORF3a174G174DgGcgAc11B.1.3960.000706
ORF3a174G174DgGcgAc11B.1.3970.004854
ORF3a174G174CGgcTgc11B.1.3970.004854
ORF3a174G174VgGcgTc11B.1.3990.001934
ORF3a174G174VgGcgTc11B.1.4110.003704
ORF3a174G174AgGcgCc11B.1.4150.014286
ORF3a174G174VgGcgTc11B.1.4170.028571
ORF3a174G174DgGcgAc11B.1.4200.010417
ORF3a174G174DgGcgAc11B.1.4240.008065
ORF3a174G174DgGcgAc11B.1.4270.00005
ORF3a174G174delGGC---11B.1.4270.00005
ORF3a174G174GggCggT11B.1.4270.00005
ORF3a174G174AgGcgCc11B.1.4290.000024
ORF3a174G174CGgcTgc11B.1.438.10.000107
ORF3a174G174AgGcgCc11B.1.4390.005917
ORF3a174G174VgGcgTc11B.1.4420.035714
ORF3a174G174VgGcgTc11B.1.4430.004673
ORF3a174G174DgGcgAc11B.1.4560.003268
ORF3a174G174VgGcgTc11B.1.4590.004082
ORF3a174G174VgGcgTc11B.1.466.20.000391
ORF3a174G174VgGcgTc11B.1.4680.005714
ORF3a174G174CGgcTgc11B.1.4980.020408
ORF3a174G174CGgcTgc11B.1.5240.001406
ORF3a174G174delGGC---11B.1.5250.000113
ORF3a174G174DgGcgAc11B.1.5330.009615
ORF3a174G174DgGcgAc11B.1.5350.028571
ORF3a174G174DgGcgAc11B.1.5460.003704
ORF3a174G174DgGcgAc11B.1.5610.000397
ORF3a174G174VgGcgTc11B.1.564.10.001577
ORF3a174G174DgGcgAc11B.1.5660.019231
ORF3a174G174AgGcgCc11B.1.5740.002151
ORF3a174G174DgGcgAc11B.1.5870.001898
ORF3a174G174AgGcgCc11B.1.5880.00091
ORF3a174G174del1GGC-NN11B.1.5960.000087
ORF3a174G174GggCggA11B.1.5960.000087
ORF3a174G174VgGcgTc11B.1.5960.000087
ORF3a174G174delGGC---11B.1.617.10.000129
ORF3a174G174AgGcgCc11B.1.617.20.000004
ORF3a174G174CGgcTgc11B.1.6210.000089
ORF3a174G174CGgcTgc11B.1.621.10.000506
ORF3a174G174delGGC---11B.1.621.10.000506
ORF3a174G174CGgcTgc11B.1.6230.000536
ORF3a174G174SGgcAgc11B.1.6370.000073
ORF3a174G174VgGcgTc11B.1.80.001972
ORF3a174G174VgGcgTc11B.1.810.021277
ORF3a174G174VgGcgTc11B.400.000364
ORF3a174G174del1ggCgg-11B.550.00295
ORF3a174G174VgGcgTc11B.60.00091
ORF3a174G174VgGcgTc11C.220.071429
ORF3a174G174CGgcTgc11C.230.005814
ORF3a174G174VgGcgTc11C.360.000911
ORF3a174G174DgGcgAc11C.36.3.10.002717
ORF3a174G174SGgcAgc11C.370.000116
ORF3a174G174CGgcTgc11C.40.01
ORF3a174G174CGgcTgc11L.30.003546
ORF3a174G174VgGcgTc11P.10.000016
ORF3a174G174DgGcgAc11P.1.10.000318
ORF3a174G174DgGcgAc11P.1.120.000484
ORF3a174G174DgGcgAc11P.1.140.000048
ORF3a174G174delGGC---11P.1.150.000232
ORF3a174G174DgGcgAc11P.1.160.000374
ORF3a174G174DgGcgAc11P.1.70.000319
ORF3a174G174CGgcTgc11P.20.000187
ORF3a174G174DgGcgAc11P.60.003145
ORF3a174G174delGGC---11Q.10.000126
ORF3a174G174DgGcgAc11Q.30.000145
ORF3a174G174GggCggT11Q.30.000145
ORF3a174G174SGgcAgc11Q.80.000165
ORF3a174G174DgGcgAc11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.