CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 174 | G174D | nonsyn | gGc | gAc | 5744 | 5744 | 1 | 25912-25914 | |
ORF3a | 174 | G174C | nonsyn | Ggc | Tgc | 4654 | 4629 | 0.994628 | 25912-25914 | |
ORF3a | 174 | G174C | nonsyn | GgC | TgT | 4654 | 25 | 0.00537172 | 25912-25914 | |
ORF3a | 174 | G174V | nonsyn | gGc | gTc | 2864 | 2863 | 0.999651 | 25912-25914 | |
ORF3a | 174 | G174V | nonsyn | gGC | gTT | 2864 | 1 | 0.000349162 | 25912-25914 | |
ORF3a | 174 | G174S | nonsyn | Ggc | Agc | 1196 | 1195 | 0.999164 | 25912-25914 | |
ORF3a | 174 | G174S | nonsyn | GgC | AgT | 1196 | 1 | 0.00083612 | 25912-25914 | |
ORF3a | 174 | G174A | nonsyn | gGc | gCc | 193 | 193 | 1 | 25912-25914 | |
ORF3a | 174 | G174G | syn | ggC | ggT | 131 | 99 | 0.755725 | 25912-25914 | |
ORF3a | 174 | G174G | syn | ggC | ggA | 131 | 28 | 0.21374 | 25912-25914 | |
ORF3a | 174 | G174G | syn | ggC | ggG | 131 | 4 | 0.0305344 | 25912-25914 | |
ORF3a | 174 | G174del | del | GGC | --- | 43 | 43 | 1 | 25912-25914 | |
ORF3a | 174 | G174N | nonsyn | GGC | AAT | 14 | 14 | 1 | 25912-25914 | |
ORF3a | 174 | G174del1 | del | ggC | gg- | 13 | 6 | 0.461538 | 25912-25914 | |
ORF3a | 174 | G174del1 | del | Ggc | -gc | 13 | 5 | 0.384615 | 25912-25914 | |
ORF3a | 174 | G174del1 | del | GGC | -NN | 13 | 1 | 0.0769231 | 25912-25914 | |
ORF3a | 174 | G174del1 | del | GGC | -CA | 13 | 1 | 0.0769231 | 25912-25914 | |
ORF3a | 174 | G174F | nonsyn | GGc | TTc | 6 | 6 | 1 | 25912-25914 | |
ORF3a | 174 | G174R | nonsyn | Ggc | Cgc | 2 | 2 | 1 | 25912-25914 | |
ORF3a | 174 | G174P | nonsyn | GGc | CCc | 1 | 1 | 1 | 25912-25914 | |
ORF3a | 174 | G174W | nonsyn | GgC | TgG | 1 | 1 | 1 | 25912-25914 | |
ORF3a | 174 | G174I | nonsyn | GGc | ATc | 1 | 1 | 1 | 25912-25914 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 174 | G174D | gGc | gAc | 5744 | 5744 | All | 0.001099 |
ORF3a | 174 | G174C | Ggc | Tgc | 4629 | 4654 | All | 0.000885 |
ORF3a | 174 | G174C | GgC | TgT | 25 | 4654 | All | 0.000005 |
ORF3a | 174 | G174V | gGc | gTc | 2863 | 2864 | All | 0.000548 |
ORF3a | 174 | G174V | gGC | gTT | 1 | 2864 | All | 0 |
ORF3a | 174 | G174C | Ggc | Tgc | 1204 | 1205 | B.1.1.222 | 0.245614 |
ORF3a | 174 | G174C | GgC | TgT | 1 | 1205 | B.1.1.222 | 0.000204 |
ORF3a | 174 | G174D | gGc | gAc | 1199 | 1199 | B.1.1.348 | 0.954618 |
ORF3a | 174 | G174S | Ggc | Agc | 1195 | 1196 | All | 0.000229 |
ORF3a | 174 | G174S | GgC | AgT | 1 | 1196 | All | 0 |
ORF3a | 174 | G174V | gGc | gTc | 1161 | 1161 | AY.25 | 0.006983 |
ORF3a | 174 | G174D | gGc | gAc | 863 | 863 | B.1.568 | 0.958889 |
ORF3a | 174 | G174C | Ggc | Tgc | 793 | 793 | B.1.497 | 0.249607 |
ORF3a | 174 | G174S | Ggc | Agc | 681 | 681 | B.1.429 | 0.016023 |
ORF3a | 174 | G174V | gGc | gTc | 664 | 664 | B.1 | 0.006082 |
ORF3a | 174 | G174D | gGc | gAc | 645 | 645 | B.1 | 0.005908 |
ORF3a | 174 | G174C | Ggc | Tgc | 532 | 555 | B.1.1.432 | 0.673418 |
ORF3a | 174 | G174C | GgC | TgT | 23 | 555 | B.1.1.432 | 0.029114 |
ORF3a | 174 | G174D | gGc | gAc | 506 | 506 | B.1.582 | 0.248283 |
ORF3a | 174 | G174D | gGc | gAc | 450 | 450 | B.1.127 | 0.989011 |
ORF3a | 174 | G174D | gGc | gAc | 449 | 449 | B.1.1.7 | 0.000402 |
ORF3a | 174 | G174C | Ggc | Tgc | 287 | 287 | AY.4 | 0.000447 |
ORF3a | 174 | G174D | gGc | gAc | 267 | 267 | AY.4 | 0.000416 |
ORF3a | 174 | G174V | gGc | gTc | 220 | 220 | B.1.1.222 | 0.04488 |
ORF3a | 174 | G174C | Ggc | Tgc | 207 | 207 | B.1.1.7 | 0.000185 |
ORF3a | 174 | G174V | gGc | gTc | 202 | 202 | B.1.1.39 | 0.102956 |
ORF3a | 174 | G174C | Ggc | Tgc | 195 | 195 | B.1.1.274 | 0.984848 |
ORF3a | 174 | G174A | gGc | gCc | 193 | 193 | All | 0.000037 |
ORF3a | 174 | G174D | gGc | gAc | 177 | 177 | B.1.265 | 0.224905 |
ORF3a | 174 | G174V | gGc | gTc | 171 | 171 | B.1.36 | 0.024949 |
ORF3a | 174 | G174C | Ggc | Tgc | 163 | 163 | B.1.1 | 0.002957 |
ORF3a | 174 | G174C | Ggc | Tgc | 153 | 153 | B.1.177 | 0.002015 |
ORF3a | 174 | G174D | gGc | gAc | 152 | 152 | B.1.177 | 0.002001 |
ORF3a | 174 | G174D | gGc | gAc | 149 | 149 | B.1.243 | 0.010368 |
ORF3a | 174 | G174C | Ggc | Tgc | 145 | 146 | B.1 | 0.001328 |
ORF3a | 174 | G174C | GgC | TgT | 1 | 146 | B.1 | 0.000009 |
ORF3a | 174 | G174S | Ggc | Agc | 145 | 145 | B.1.1.7 | 0.00013 |
ORF3a | 174 | G174C | Ggc | Tgc | 132 | 132 | B.1.617.2 | 0.000497 |
ORF3a | 174 | G174G | ggC | ggT | 99 | 131 | All | 0.000019 |
ORF3a | 174 | G174G | ggC | ggA | 28 | 131 | All | 0.000005 |
ORF3a | 174 | G174G | ggC | ggG | 4 | 131 | All | 0.000001 |
ORF3a | 174 | G174V | gGc | gTc | 122 | 122 | B.1.1.7 | 0.000109 |
ORF3a | 174 | G174S | Ggc | Agc | 116 | 116 | AY.69 | 0.021654 |
ORF3a | 174 | G174D | gGc | gAc | 99 | 99 | B.1.1 | 0.001796 |
ORF3a | 174 | G174D | gGc | gAc | 98 | 98 | B.1.543 | 0.98 |
ORF3a | 174 | G174D | gGc | gAc | 69 | 69 | B.1.2 | 0.000608 |
ORF3a | 174 | G174C | Ggc | Tgc | 60 | 60 | AY.43 | 0.000266 |
ORF3a | 174 | G174C | Ggc | Tgc | 59 | 59 | B.1.36 | 0.008608 |
ORF3a | 174 | G174C | Ggc | Tgc | 54 | 54 | B.1.1.28 | 0.016807 |
ORF3a | 174 | G174C | Ggc | Tgc | 52 | 52 | B.1.427 | 0.002626 |
ORF3a | 174 | G174D | gGc | gAc | 48 | 48 | B.1.1.519 | 0.001906 |
ORF3a | 174 | G174S | Ggc | Agc | 47 | 47 | B.1.526 | 0.001105 |
ORF3a | 174 | G174D | gGc | gAc | 46 | 46 | AY.20 | 0.001788 |
ORF3a | 174 | G174D | gGc | gAc | 46 | 46 | B.1.617.2 | 0.000173 |
ORF3a | 174 | G174V | gGc | gTc | 45 | 45 | B.1.1 | 0.000816 |
ORF3a | 174 | G174A | gGc | gCc | 44 | 44 | B.1 | 0.000403 |
ORF3a | 174 | G174C | Ggc | Tgc | 44 | 44 | B.1.177.82 | 0.021002 |
ORF3a | 174 | G174del | GGC | --- | 43 | 43 | All | 0.000008 |
ORF3a | 174 | G174S | Ggc | Agc | 42 | 43 | B.1.177 | 0.000553 |
ORF3a | 174 | G174S | GgC | AgT | 1 | 43 | B.1.177 | 0.000013 |
ORF3a | 174 | G174C | Ggc | Tgc | 42 | 42 | B.1.470 | 0.058989 |
ORF3a | 174 | G174A | gGc | gCc | 41 | 41 | B.1.1.61 | 0.359649 |
ORF3a | 174 | G174D | gGc | gAc | 40 | 40 | B.1.351 | 0.001189 |
ORF3a | 174 | G174C | Ggc | Tgc | 36 | 36 | B.1.1.1 | 0.011761 |
ORF3a | 174 | G174V | gGc | gTc | 26 | 27 | B.1.617.2 | 0.000098 |
ORF3a | 174 | G174V | gGC | gTT | 1 | 27 | B.1.617.2 | 0.000004 |
ORF3a | 174 | G174D | gGc | gAc | 25 | 25 | AY.5 | 0.000516 |
ORF3a | 174 | G174C | Ggc | Tgc | 25 | 25 | B.1.1.33 | 0.010522 |
ORF3a | 174 | G174D | gGc | gAc | 24 | 24 | AY.43 | 0.000106 |
ORF3a | 174 | G174V | gGc | gTc | 21 | 21 | A.23.1 | 0.014789 |
ORF3a | 174 | G174S | Ggc | Agc | 21 | 21 | AY.25 | 0.000126 |
ORF3a | 174 | G174D | gGc | gAc | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 174 | G174G | ggC | ggT | 20 | 20 | AY.6 | 0.000823 |
ORF3a | 174 | G174C | Ggc | Tgc | 19 | 19 | AY.44 | 0.000116 |
ORF3a | 174 | G174C | Ggc | Tgc | 19 | 19 | B.1.1.241 | 0.039337 |
ORF3a | 174 | G174D | gGc | gAc | 19 | 19 | B.1.258 | 0.001264 |
ORF3a | 174 | G174V | gGc | gTc | 18 | 18 | AY.4 | 0.000028 |
ORF3a | 174 | G174S | Ggc | Agc | 18 | 18 | AY.4 | 0.000028 |
ORF3a | 174 | G174C | Ggc | Tgc | 18 | 18 | AY.9 | 0.001217 |
ORF3a | 174 | G174A | gGc | gCc | 17 | 17 | B.1.1.172 | 0.309091 |
ORF3a | 174 | G174A | gGc | gCc | 17 | 17 | B.1.320 | 0.021171 |
ORF3a | 174 | G174S | Ggc | Agc | 17 | 17 | P.1.14 | 0.000813 |
ORF3a | 174 | G174C | Ggc | Tgc | 16 | 16 | AY.3.1 | 0.001364 |
ORF3a | 174 | G174C | Ggc | Tgc | 16 | 16 | AY.61 | 0.001676 |
ORF3a | 174 | G174V | gGc | gTc | 15 | 15 | AY.44 | 0.000091 |
ORF3a | 174 | G174A | gGc | gCc | 15 | 15 | B.1.8 | 0.029586 |
ORF3a | 174 | G174N | GGC | AAT | 14 | 14 | All | 0.000003 |
ORF3a | 174 | G174N | GGC | AAT | 14 | 14 | AY.44 | 0.000085 |
ORF3a | 174 | G174C | Ggc | Tgc | 14 | 14 | B.1.1.37 | 0.0027 |
ORF3a | 174 | G174D | gGc | gAc | 14 | 14 | B.1.177.43 | 0.020679 |
ORF3a | 174 | G174C | Ggc | Tgc | 14 | 14 | B.1.177.77 | 0.010167 |
ORF3a | 174 | G174S | Ggc | Agc | 14 | 14 | B.1.561 | 0.005558 |
ORF3a | 174 | G174del1 | ggC | gg- | 6 | 13 | All | 0.000001 |
ORF3a | 174 | G174del1 | Ggc | -gc | 5 | 13 | All | 0.000001 |
ORF3a | 174 | G174del1 | GGC | -CA | 1 | 13 | All | 0 |
ORF3a | 174 | G174del1 | GGC | -NN | 1 | 13 | All | 0 |
ORF3a | 174 | G174C | Ggc | Tgc | 13 | 13 | AY.46.4 | 0.002139 |
ORF3a | 174 | G174S | Ggc | Agc | 13 | 13 | B.1.160.16 | 0.012082 |
ORF3a | 174 | G174C | Ggc | Tgc | 13 | 13 | B.1.179 | 0.048872 |
ORF3a | 174 | G174D | gGc | gAc | 13 | 13 | B.1.499 | 0.013655 |
ORF3a | 174 | G174C | Ggc | Tgc | 12 | 12 | AY.102 | 0.000318 |
ORF3a | 174 | G174C | Ggc | Tgc | 12 | 12 | AY.20 | 0.000466 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | AY.3 | 0.000119 |
ORF3a | 174 | G174S | Ggc | Agc | 12 | 12 | AY.39.1 | 0.000475 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | AY.75 | 0.000672 |
ORF3a | 174 | G174D | gGc | gAc | 12 | 12 | B.1.1.291 | 0.008909 |
ORF3a | 174 | G174C | Ggc | Tgc | 11 | 11 | AY.26 | 0.000311 |
ORF3a | 174 | G174G | ggC | ggT | 11 | 11 | B.1.160 | 0.000343 |
ORF3a | 174 | G174D | gGc | gAc | 11 | 11 | B.1.526 | 0.000259 |
ORF3a | 174 | G174D | gGc | gAc | 11 | 11 | B.1.612 | 0.029178 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | AY.23 | 0.000697 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | AY.47 | 0.000311 |
ORF3a | 174 | G174S | Ggc | Agc | 10 | 10 | B.1 | 0.000092 |
ORF3a | 174 | G174A | gGc | gCc | 10 | 10 | B.1.1 | 0.000181 |
ORF3a | 174 | G174D | gGc | gAc | 10 | 10 | B.1.1.307 | 0.025316 |
ORF3a | 174 | G174del | GGC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 174 | G174G | ggC | ggT | 6 | 10 | B.1.1.7 | 0.000005 |
ORF3a | 174 | G174G | ggC | ggA | 3 | 10 | B.1.1.7 | 0.000003 |
ORF3a | 174 | G174G | ggC | ggG | 1 | 10 | B.1.1.7 | 0.000001 |
ORF3a | 174 | G174C | Ggc | Tgc | 10 | 10 | B.1.499 | 0.010504 |
ORF3a | 174 | G174D | gGc | gAc | 9 | 9 | AY.44 | 0.000055 |
ORF3a | 174 | G174C | Ggc | Tgc | 9 | 9 | AY.59 | 0.004767 |
ORF3a | 174 | G174C | Ggc | Tgc | 9 | 9 | B.1.160.30 | 0.026786 |
ORF3a | 174 | G174V | gGc | gTc | 9 | 9 | B.1.425 | 0.026946 |
ORF3a | 174 | G174D | gGc | gAc | 9 | 9 | P.1 | 0.000142 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | AY.102 | 0.000212 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 174 | G174G | ggC | ggT | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 174 | G174G | ggC | ggT | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | AY.54 | 0.000763 |
ORF3a | 174 | G174C | Ggc | Tgc | 8 | 8 | B.1.1.316 | 0.007401 |
ORF3a | 174 | G174G | ggC | ggA | 8 | 8 | B.1.234 | 0.001056 |
ORF3a | 174 | G174V | gGc | gTc | 8 | 8 | B.1.336 | 0.019512 |
ORF3a | 174 | G174C | Ggc | Tgc | 8 | 8 | B.1.429 | 0.000188 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.595 | 0.002088 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.596 | 0.000697 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.628 | 0.002819 |
ORF3a | 174 | G174D | gGc | gAc | 8 | 8 | B.1.637 | 0.000585 |
ORF3a | 174 | G174C | Ggc | Tgc | 7 | 7 | AY.100 | 0.000322 |
ORF3a | 174 | G174D | gGc | gAc | 7 | 7 | AY.102 | 0.000186 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | AY.30 | 0.00277 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 174 | G174C | Ggc | Tgc | 7 | 7 | AY.4.2 | 0.000152 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | B.1.1.1 | 0.002287 |
ORF3a | 174 | G174A | gGc | gCc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 174 | G174C | Ggc | Tgc | 7 | 7 | B.1.111 | 0.008226 |
ORF3a | 174 | G174C | Ggc | Tgc | 7 | 7 | B.1.237 | 0.034826 |
ORF3a | 174 | G174V | gGc | gTc | 7 | 7 | B.1.456 | 0.022876 |
ORF3a | 174 | G174S | Ggc | Agc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 174 | G174C | Ggc | Tgc | 7 | 7 | B.1.9 | 0.04321 |
ORF3a | 174 | G174S | Ggc | Agc | 6 | 6 | A.23.1 | 0.004225 |
ORF3a | 174 | G174F | GGc | TTc | 6 | 6 | All | 0.000001 |
ORF3a | 174 | G174C | Ggc | Tgc | 6 | 6 | AY.3 | 0.00006 |
ORF3a | 174 | G174C | Ggc | Tgc | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 174 | G174F | GGc | TTc | 6 | 6 | B.1 | 0.000055 |
ORF3a | 174 | G174G | ggC | ggT | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 174 | G174C | Ggc | Tgc | 6 | 6 | B.1.1.427 | 0.857143 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.36.22 | 0.007246 |
ORF3a | 174 | G174V | gGc | gTc | 6 | 6 | B.1.441 | 0.057692 |
ORF3a | 174 | G174D | gGc | gAc | 6 | 6 | B.1.451 | 0.04918 |
ORF3a | 174 | G174C | Ggc | Tgc | 6 | 6 | P.1 | 0.000095 |
ORF3a | 174 | G174C | Ggc | Tgc | 5 | 5 | AY.113 | 0.000712 |
ORF3a | 174 | G174del | GGC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 174 | G174A | gGc | gCc | 5 | 5 | B.1.1.132 | 0.074627 |
ORF3a | 174 | G174C | Ggc | Tgc | 5 | 5 | B.1.1.214 | 0.000277 |
ORF3a | 174 | G174C | Ggc | Tgc | 5 | 5 | B.1.1.431 | 0.080645 |
ORF3a | 174 | G174V | gGc | gTc | 5 | 5 | B.1.210 | 0.010661 |
ORF3a | 174 | G174C | Ggc | Tgc | 5 | 5 | B.1.258 | 0.000333 |
ORF3a | 174 | G174del1 | Ggc | -gc | 4 | 5 | B.1.36 | 0.000584 |
ORF3a | 174 | G174del1 | ggC | gg- | 1 | 5 | B.1.36 | 0.000146 |
ORF3a | 174 | G174S | Ggc | Agc | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 174 | G174A | gGc | gCc | 5 | 5 | B.1.508 | 0.128205 |
ORF3a | 174 | G174D | gGc | gAc | 5 | 5 | B.1.599 | 0.018248 |
ORF3a | 174 | G174A | gGc | gCc | 4 | 4 | A.1 | 0.001127 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | AY.120 | 0.000149 |
ORF3a | 174 | G174G | ggC | ggT | 2 | 4 | AY.25 | 0.000012 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 4 | AY.25 | 0.000006 |
ORF3a | 174 | G174G | ggC | ggG | 1 | 4 | AY.25 | 0.000006 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | AY.33 | 0.000267 |
ORF3a | 174 | G174G | ggC | ggT | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | AY.5.4 | 0.001107 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 174 | G174G | ggC | ggA | 4 | 4 | AY.79 | 0.004843 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | AY.9.2 | 0.000147 |
ORF3a | 174 | G174del | GGC | --- | 4 | 4 | B.1 | 0.000037 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.1.1 | 0.001307 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.1.13 | 0.142857 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | B.1.1.220 | 0.007435 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | B.1.1.46 | 0.017467 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 174 | G174A | gGc | gCc | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 174 | G174D | gGc | gAc | 4 | 4 | B.1.311 | 0.001098 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | B.1.433 | 0.01278 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | B.1.466.2 | 0.001565 |
ORF3a | 174 | G174S | Ggc | Agc | 4 | 4 | B.1.466.2 | 0.001565 |
ORF3a | 174 | G174C | Ggc | Tgc | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 174 | G174del | GGC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | C.35 | 0.003096 |
ORF3a | 174 | G174V | gGc | gTc | 4 | 4 | C.37 | 0.000464 |
ORF3a | 174 | G174G | ggC | ggT | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | AY.12 | 0.000948 |
ORF3a | 174 | G174S | Ggc | Agc | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 174 | G174G | ggC | ggT | 3 | 3 | AY.36 | 0.000445 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.58 | 0.002722 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | AY.72 | 0.004082 |
ORF3a | 174 | G174S | Ggc | Agc | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 174 | G174G | ggC | ggG | 1 | 3 | B.1 | 0.000009 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 3 | B.1 | 0.000009 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 3 | B.1 | 0.000009 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.180 | 0.032258 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.1.207 | 0.003546 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | B.1.1.237 | 0.016216 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.269 | 0.00406 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.1.397 | 0.006757 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.1.417 | 0.008108 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | B.1.1.517 | 0.020408 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.111 | 0.003525 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 174 | G174S | Ggc | Agc | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 174 | G174C | Ggc | Tgc | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | C.1 | 0.007177 |
ORF3a | 174 | G174V | gGc | gTc | 3 | 3 | C.16 | 0.003181 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | C.37 | 0.000348 |
ORF3a | 174 | G174G | ggC | ggA | 3 | 3 | P.1 | 0.000047 |
ORF3a | 174 | G174D | gGc | gAc | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 174 | G174G | ggC | ggT | 3 | 3 | P.2 | 0.00056 |
ORF3a | 174 | G174del1 | ggC | gg- | 2 | 2 | 0.111111 | |
ORF3a | 174 | G174R | Ggc | Cgc | 2 | 2 | All | 0 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 174 | G174G | ggC | ggT | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 174 | G174A | gGc | gCc | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | AY.79 | 0.002421 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.171 | 0.007353 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.388 | 0.090909 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.1.462 | 0.017241 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 174 | G174G | ggC | ggA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.143 | 0.042553 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.160.32 | 0.008584 |
ORF3a | 174 | G174del | GGC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.16 | 0.001329 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.52 | 0.003515 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.177.8 | 0.001505 |
ORF3a | 174 | G174A | gGc | gCc | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.245 | 0.0625 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.264 | 0.024691 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.289 | 0.005319 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.298 | 0.004228 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.349 | 0.00143 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.36.16 | 0.002849 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.36.31 | 0.003503 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.388 | 0.181818 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.398 | 0.005952 |
ORF3a | 174 | G174A | gGc | gCc | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 174 | G174V | gGc | gTc | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.526 | 0.000047 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | B.1.555 | 0.044444 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 174 | G174S | Ggc | Agc | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 174 | G174D | gGc | gAc | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 174 | G174C | Ggc | Tgc | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | A | 0.000387 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | A.2 | 0.000662 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | A.5 | 0.001923 |
ORF3a | 174 | G174W | GgC | TgG | 1 | 1 | All | 0 |
ORF3a | 174 | G174P | GGc | CCc | 1 | 1 | All | 0 |
ORF3a | 174 | G174I | GGc | ATc | 1 | 1 | All | 0 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 174 | G174del1 | Ggc | -gc | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 174 | G174R | Ggc | Cgc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 174 | G174R | Ggc | Cgc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 174 | G174del1 | ggC | gg- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B | 0.000128 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B | 0.000128 |
ORF3a | 174 | G174del1 | ggC | gg- | 1 | 1 | B | 0.000128 |
ORF3a | 174 | G174I | GGc | ATc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 174 | G174P | GGc | CCc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.109 | 0.04 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.229 | 0.005747 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.244 | 0.015385 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.275 | 0.011236 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.378 | 0.007299 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 174 | G174del1 | GGC | -CA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.1.458 | 0.041667 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.500 | 0.02 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.514 | 0.038462 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 174 | G174G | ggC | ggG | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.1.99 | 0.02381 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.110 | 0.004525 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 174 | G174W | GgC | TgG | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.218 | 0.005155 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.23 | 0.006061 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.354 | 0.043478 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.411 | 0.003704 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.415 | 0.014286 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.417 | 0.028571 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.420 | 0.010417 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.424 | 0.008065 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.439 | 0.005917 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.442 | 0.035714 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.498 | 0.020408 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.535 | 0.028571 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.546 | 0.003704 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.566 | 0.019231 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 174 | G174del1 | GGC | -NN | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 174 | G174G | ggC | ggA | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 174 | G174A | gGc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.1.81 | 0.021277 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.40 | 0.000364 |
ORF3a | 174 | G174del1 | ggC | gg- | 1 | 1 | B.55 | 0.00295 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | B.6 | 0.00091 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | C.22 | 0.071429 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | C.23 | 0.005814 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | C.36 | 0.000911 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | C.4 | 0.01 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | L.3 | 0.003546 |
ORF3a | 174 | G174V | gGc | gTc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 174 | G174C | Ggc | Tgc | 1 | 1 | P.2 | 0.000187 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | P.6 | 0.003145 |
ORF3a | 174 | G174del | GGC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 174 | G174G | ggC | ggT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 174 | G174S | Ggc | Agc | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 174 | G174D | gGc | gAc | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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