CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 173 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a173D173DsyngaTgaC230230125909-25911

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a173D173DgaTgaC230230All0.000044
ORF3a173D173DgaTgaC3131AY.390.000766
ORF3a173D173DgaTgaC2323B.1.1.70.000021
ORF3a173D173DgaTgaC2222B.10.000202
ORF3a173D173DgaTgaC2020B.1.617.20.000075
ORF3a173D173DgaTgaC1414AY.430.000062
ORF3a173D173DgaTgaC1313AY.260.000368
ORF3a173D173DgaTgaC1212AY.1020.000318
ORF3a173D173DgaTgaC1212AY.40.000019
ORF3a173D173DgaTgaC1111AY.250.000066
ORF3a173D173DgaTgaC1010B.1.3510.000297
ORF3a173D173DgaTgaC88AY.1030.00005
ORF3a173D173DgaTgaC66AY.440.000037
ORF3a173D173DgaTgaC55AY.270.000324
ORF3a173D173DgaTgaC33AY.46.60.000217
ORF3a173D173DgaTgaC33AY.470.000093
ORF3a173D173DgaTgaC22AY.30.00002
ORF3a173D173DgaTgaC22B.1.10.000036
ORF3a173D173DgaTgaC22B.1.1770.000026
ORF3a173D173DgaTgaC22B.1.20.000018
ORF3a173D173DgaTgaC11AY.1100.000113
ORF3a173D173DgaTgaC11AY.1110.000183
ORF3a173D173DgaTgaC11AY.1200.000037
ORF3a173D173DgaTgaC11AY.230.00007
ORF3a173D173DgaTgaC11AY.290.000016
ORF3a173D173DgaTgaC11AY.340.000097
ORF3a173D173DgaTgaC11AY.39.10.00004
ORF3a173D173DgaTgaC11AY.420.00004
ORF3a173D173DgaTgaC11AY.460.000104
ORF3a173D173DgaTgaC11AY.50.000021
ORF3a173D173DgaTgaC11AY.60.000041
ORF3a173D173DgaTgaC11AY.880.000884
ORF3a173D173DgaTgaC11AY.910.00073
ORF3a173D173DgaTgaC11AY.920.000287
ORF3a173D173DgaTgaC11AY.98.10.000048
ORF3a173D173DgaTgaC11AY.990.001049
ORF3a173D173DgaTgaC11B.1.1.280.000311
ORF3a173D173DgaTgaC11B.1.1.3060.000438
ORF3a173D173DgaTgaC11B.1.2340.000132
ORF3a173D173DgaTgaC11B.1.3610.001289
ORF3a173D173DgaTgaC11B.1.3750.00082
ORF3a173D173DgaTgaC11B.1.4230.010204
ORF3a173D173DgaTgaC11B.1.4290.000024
ORF3a173D173DgaTgaC11B.1.466.10.007194
ORF3a173D173DgaTgaC11B.1.5770.000687
ORF3a173D173DgaTgaC11C.370.000116
ORF3a173D173DgaTgaC11P.10.000016
ORF3a173D173DgaTgaC11Q.80.000165
ORF3a173D173DgaTgaC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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