CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 173 & Codon = gGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a173D173GnonsyngAtgGt31973197125909-25911

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a173D173GgAtgGt31973197All0.000611
ORF3a173D173GgAtgGt11141114B.1.10.020209
ORF3a173D173GgAtgGt470470AY.40.000732
ORF3a173D173GgAtgGt318318B.1.1.3030.878453
ORF3a173D173GgAtgGt249249B.1.1.70.000223
ORF3a173D173GgAtgGt9595B.1.617.20.000358
ORF3a173D173GgAtgGt5959AY.300.023348
ORF3a173D173GgAtgGt5757AY.1200.002119
ORF3a173D173GgAtgGt5353B.1.1.5220.913793
ORF3a173D173GgAtgGt5252B.1.1.3360.866667
ORF3a173D173GgAtgGt4646B.10.000421
ORF3a173D173GgAtgGt4141B.1.1.3380.706897
ORF3a173D173GgAtgGt4141B.1.3460.053735
ORF3a173D173GgAtgGt3030AY.430.000133
ORF3a173D173GgAtgGt2323AY.440.00014
ORF3a173D173GgAtgGt2121AY.1030.00013
ORF3a173D173GgAtgGt1919B.1.1.5190.000755
ORF3a173D173GgAtgGt1919B.1.4290.000447
ORF3a173D173GgAtgGt1717B.1.1.10.005554
ORF3a173D173GgAtgGt1717B.1.1.3190.298246
ORF3a173D173GgAtgGt1616AY.10.006332
ORF3a173D173GgAtgGt1515A.270.024834
ORF3a173D173GgAtgGt1515AY.1020.000398
ORF3a173D173GgAtgGt1515B.1.1770.000198
ORF3a173D173GgAtgGt1313AY.200.000505
ORF3a173D173GgAtgGt1313B.1.466.20.005086
ORF3a173D173GgAtgGt1212AY.30.000119
ORF3a173D173GgAtgGt1212B.1.2430.000835
ORF3a173D173GgAtgGt1212B.1.2580.000799
ORF3a173D173GgAtgGt1212B.1.36.80.012
ORF3a173D173GgAtgGt1212B.1.5260.000282
ORF3a173D173GgAtgGt1111AY.250.000066
ORF3a173D173GgAtgGt99B.1.1.2690.012179
ORF3a173D173GgAtgGt88AY.1190.000282
ORF3a173D173GgAtgGt88B.1.1.2240.114286
ORF3a173D173GgAtgGt88B.1.1700.034483
ORF3a173D173GgAtgGt88B.1.5510.010323
ORF3a173D173GgAtgGt77AY.3.10.000597
ORF3a173D173GgAtgGt77AY.350.001631
ORF3a173D173GgAtgGt77B.1.1.100.007804
ORF3a173D173GgAtgGt77B.1.1.3820.25
ORF3a173D173GgAtgGt77B.1.1.4470.25
ORF3a173D173GgAtgGt77B.1.36.290.003621
ORF3a173D173GgAtgGt66AY.740.000694
ORF3a173D173GgAtgGt66B.1.1.1700.007481
ORF3a173D173GgAtgGt66B.1.1.4090.016997
ORF3a173D173GgAtgGt66B.1.20.000053
ORF3a173D173GgAtgGt55A.2.50.002495
ORF3a173D173GgAtgGt55AY.120.20.006427
ORF3a173D173GgAtgGt55AY.60.000206
ORF3a173D173GgAtgGt55B.1.1.1940.024752
ORF3a173D173GgAtgGt55C.36.30.002836
ORF3a173D173GgAtgGt44A0.001548
ORF3a173D173GgAtgGt44AY.330.000267
ORF3a173D173GgAtgGt44AY.390.000099
ORF3a173D173GgAtgGt44AY.470.000124
ORF3a173D173GgAtgGt44AY.590.002119
ORF3a173D173GgAtgGt44B.1.1.250.002274
ORF3a173D173GgAtgGt44B.1.1.2630.006231
ORF3a173D173GgAtgGt44B.1.1.2770.003035
ORF3a173D173GgAtgGt44B.1.360.000584
ORF3a173D173GgAtgGt44B.1.4270.000202
ORF3a173D173GgAtgGt44B.1.5950.001044
ORF3a173D173GgAtgGt44P.10.000063
ORF3a173D173GgAtgGt33AY.1130.000427
ORF3a173D173GgAtgGt33AY.5.30.001012
ORF3a173D173GgAtgGt33B.1.1.280.000934
ORF3a173D173GgAtgGt33B.1.4560.009804
ORF3a173D173GgAtgGt33B.1.4970.000944
ORF3a173D173GgAtgGt33C.360.002732
ORF3a173D173GgAtgGt22AY.280.003781
ORF3a173D173GgAtgGt22AY.290.000032
ORF3a173D173GgAtgGt22AY.4.20.000043
ORF3a173D173GgAtgGt22AY.850.000854
ORF3a173D173GgAtgGt22B0.000256
ORF3a173D173GgAtgGt22B.1.1.1370.025
ORF3a173D173GgAtgGt22B.1.1.1570.001826
ORF3a173D173GgAtgGt22B.1.1.1980.002937
ORF3a173D173GgAtgGt22B.1.1.2680.029851
ORF3a173D173GgAtgGt22B.1.1.2980.001724
ORF3a173D173GgAtgGt22B.1.1.3850.008929
ORF3a173D173GgAtgGt22B.1.1.4300.083333
ORF3a173D173GgAtgGt22B.1.1.4330.002849
ORF3a173D173GgAtgGt22B.1.1.80.007168
ORF3a173D173GgAtgGt22B.1.177.40.000422
ORF3a173D173GgAtgGt22B.1.3510.000059
ORF3a173D173GgAtgGt22B.1.3890.002004
ORF3a173D173GgAtgGt22B.1.5090.001732
ORF3a173D173GgAtgGt22B.1.5230.004902
ORF3a173D173GgAtgGt22B.1.5640.000852
ORF3a173D173GgAtgGt22P.1.150.000465
ORF3a173D173GgAtgGt11A.2.5.20.001572
ORF3a173D173GgAtgGt11AY.1180.000063
ORF3a173D173GgAtgGt11AY.160.00038
ORF3a173D173GgAtgGt11AY.230.00007
ORF3a173D173GgAtgGt11AY.23.10.000417
ORF3a173D173GgAtgGt11AY.240.000431
ORF3a173D173GgAtgGt11AY.260.000028
ORF3a173D173GgAtgGt11AY.39.10.00004
ORF3a173D173GgAtgGt11AY.400.000964
ORF3a173D173GgAtgGt11AY.420.00004
ORF3a173D173GgAtgGt11AY.460.000104
ORF3a173D173GgAtgGt11AY.530.000288
ORF3a173D173GgAtgGt11AY.540.000095
ORF3a173D173GgAtgGt11AY.610.000105
ORF3a173D173GgAtgGt11AY.630.000387
ORF3a173D173GgAtgGt11AY.750.000056
ORF3a173D173GgAtgGt11AY.780.001541
ORF3a173D173GgAtgGt11AY.80.000606
ORF3a173D173GgAtgGt11AY.930.000273
ORF3a173D173GgAtgGt11AY.98.10.000048
ORF3a173D173GgAtgGt11B.1.1.1170.009709
ORF3a173D173GgAtgGt11B.1.1.1220.045455
ORF3a173D173GgAtgGt11B.1.1.1450.037037
ORF3a173D173GgAtgGt11B.1.1.1480.008772
ORF3a173D173GgAtgGt11B.1.1.2070.001182
ORF3a173D173GgAtgGt11B.1.1.2200.001859
ORF3a173D173GgAtgGt11B.1.1.2540.011236
ORF3a173D173GgAtgGt11B.1.1.2790.001121
ORF3a173D173GgAtgGt11B.1.1.2990.012195
ORF3a173D173GgAtgGt11B.1.1.3180.000302
ORF3a173D173GgAtgGt11B.1.1.330.000421
ORF3a173D173GgAtgGt11B.1.1.3780.007299
ORF3a173D173GgAtgGt11B.1.1.3880.045455
ORF3a173D173GgAtgGt11B.1.1.3970.002252
ORF3a173D173GgAtgGt11B.1.1.3980.003226
ORF3a173D173GgAtgGt11B.1.1.4070.041667
ORF3a173D173GgAtgGt11B.1.1.4100.037037
ORF3a173D173GgAtgGt11B.1.1.4160.000905
ORF3a173D173GgAtgGt11B.1.1.4220.045455
ORF3a173D173GgAtgGt11B.1.1.4480.002033
ORF3a173D173GgAtgGt11B.1.1.4620.008621
ORF3a173D173GgAtgGt11B.1.1.5280.004808
ORF3a173D173GgAtgGt11B.1.1.540.003021
ORF3a173D173GgAtgGt11B.1.1.890.006061
ORF3a173D173GgAtgGt11B.1.1840.058824
ORF3a173D173GgAtgGt11B.1.2340.000132
ORF3a173D173GgAtgGt11B.1.258.120.007874
ORF3a173D173GgAtgGt11B.1.36.100.004785
ORF3a173D173GgAtgGt11B.1.36.220.001208
ORF3a173D173GgAtgGt11B.1.36.70.004
ORF3a173D173GgAtgGt11B.1.4590.004082
ORF3a173D173GgAtgGt11B.1.4620.007246
ORF3a173D173GgAtgGt11B.1.5760.000907
ORF3a173D173GgAtgGt11B.1.5960.000087
ORF3a173D173GgAtgGt11B.1.617.10.000129
ORF3a173D173GgAtgGt11B.1.6210.000089
ORF3a173D173GgAtgGt11D.20.000075
ORF3a173D173GgAtgGt11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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