CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 172 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a172G172VnonsyngGtgTt1290221290150.99994625906-25908

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a172G172VgGtgTt129015129022All0.024676
ORF3a172G172VgGtgTt109337109343B.1.20.962753
ORF3a172G172VgGtgTt1102711027B.1.5960.960875
ORF3a172G172VgGtgTt19461947B.10.017824
ORF3a172G172VgGtgTt13141314AY.9.20.048263
ORF3a172G172VgGtgTt778778AY.40.001211
ORF3a172G172VgGtgTt739739AY.430.003274
ORF3a172G172VgGtgTt511511P.10.00805
ORF3a172G172VgGtgTt417417B.1.617.20.00157
ORF3a172G172VgGtgTt365365B.1.1.70.000327
ORF3a172G172VgGtgTt312312AY.390.00771
ORF3a172G172VgGtgTt173173B.1.10.003138
ORF3a172G172VgGtgTt151151B.1.5950.039405
ORF3a172G172VgGtgTt108108AY.260.003057
ORF3a172G172VgGtgTt107107B.1.596.11
ORF3a172G172VgGtgTt9393B.1.1600.0029
ORF3a172G172VgGtgTt6060B.1.2340.007917
ORF3a172G172VgGtgTt4949AY.440.000298
ORF3a172G172VgGtgTt4747B.1.5800.191057
ORF3a172G172VgGtgTt4242AY.250.000253
ORF3a172G172VgGtgTt3737AY.1030.00023
ORF3a172G172VgGtgTt3737B.1.177.730.020951
ORF3a172G172VgGtgTt3535AY.30.000348
ORF3a172G172VgGtgTt3333AY.50.000681
ORF3a172G172VgGtgTt3333B.1.3510.000981
ORF3a172G172VgGtgTt3232B.1.1770.000421
ORF3a172G172VgGtgTt3232B.1.4290.000753
ORF3a172G172VgGtgTt3131AY.420.001247
ORF3a172G172VgGtgTt3131B.1.360.004523
ORF3a172G172VgGtgTt3030B.1.1.2840.003222
ORF3a172G172VgGtgTt2929AY.1210.003924
ORF3a172G172VgGtgTt2626AY.460.002706
ORF3a172G172VgGtgTt2424AY.610.002515
ORF3a172G172VgGtgTt2222B.1.1.3350.285714
ORF3a172G172VgGtgTt1919B.1.1.3060.00833
ORF3a172G172VgGtgTt1919B.1.1.5190.000755
ORF3a172G172VgGtgTt1919B.1.36.240.117284
ORF3a172G172VgGtgTt1818AY.290.000284
ORF3a172G172VgGtgTt1818AY.330.001202
ORF3a172G172VgGtgTt1818B.1.1.1530.019715
ORF3a172G172VgGtgTt1818B.1.3960.012703
ORF3a172G172VgGtgTt1717B.1.5820.008342
ORF3a172G172VgGtgTt1616B.1.2430.001113
ORF3a172G172VgGtgTt1515AY.1020.000398
ORF3a172G172VgGtgTt1515B0.001917
ORF3a172G172VgGtgTt1515B.1.1.3680.046296
ORF3a172G172VgGtgTt1414B.1.3110.003844
ORF3a172G172VgGtgTt1414B.1.3690.003993
ORF3a172G172VgGtgTt1313AY.98.10.00063
ORF3a172G172VgGtgTt1313B.1.1.3970.029279
ORF3a172G172VgGtgTt1313B.1.5640.005537
ORF3a172G172VgGtgTt1212AY.230.000837
ORF3a172G172VgGtgTt1212AY.340.001164
ORF3a172G172VgGtgTt1212B.1.2060.009788
ORF3a172G172VgGtgTt1212B.1.5760.010879
ORF3a172G172VgGtgTt1212B.1.5770.008247
ORF3a172G172VgGtgTt1111AY.1190.000388
ORF3a172G172VgGtgTt1111AY.16.10.005169
ORF3a172G172VgGtgTt1111B.1.1.2320.019964
ORF3a172G172VgGtgTt1111B.1.1.500.007468
ORF3a172G172VgGtgTt1111B.1.6370.000804
ORF3a172G172VgGtgTt1010B.1.1.10.003267
ORF3a172G172VgGtgTt1010B.1.1.250.005685
ORF3a172G172VgGtgTt99AY.200.00035
ORF3a172G172VgGtgTt99AY.3.10.000767
ORF3a172G172VgGtgTt99B.1.4270.000454
ORF3a172G172VgGtgTt88AY.1000.000368
ORF3a172G172VgGtgTt88AY.750.000448
ORF3a172G172VgGtgTt88AY.980.000632
ORF3a172G172VgGtgTt88B.1.1.280.00249
ORF3a172G172VgGtgTt88B.1.177.80.00602
ORF3a172G172VgGtgTt88P.1.120.003872
ORF3a172G172VgGtgTt77A.2.50.003493
ORF3a172G172VgGtgTt77AY.1180.000439
ORF3a172G172VgGtgTt77AY.1200.00026
ORF3a172G172VgGtgTt77AY.90.000473
ORF3a172G172VgGtgTt77B.1.1.2220.001428
ORF3a172G172VgGtgTt77B.1.3670.005547
ORF3a172G172VgGtgTt77B.1.4560.022876
ORF3a172G172VgGtgTt77B.1.5260.000165
ORF3a172G172VgGtgTt77B.1.5670.023333
ORF3a172G172VgGtgTt77B.1.6120.018568
ORF3a172G172VgGtgTt66AY.470.000187
ORF3a172G172VgGtgTt66AY.75.10.001082
ORF3a172G172VgGtgTt66B.1.3490.004289
ORF3a172G172VgGtgTt55AY.160.001898
ORF3a172G172VgGtgTt55AY.450.000608
ORF3a172G172VgGtgTt55AY.650.002665
ORF3a172G172VgGtgTt55AY.960.010373
ORF3a172G172VgGtgTt55B.1.1110.005875
ORF3a172G172VgGtgTt55B.1.1390.003666
ORF3a172G172VgGtgTt55B.1.2400.001078
ORF3a172G172VgGtgTt55B.1.3290.003038
ORF3a172G172VgGtgTt55B.1.351.20.001513
ORF3a172G172VgGtgTt55B.1.3750.004098
ORF3a172G172VgGtgTt55B.1.5900.022727
ORF3a172G172VgGtgTt55B.1.617.10.000645
ORF3a172G172VgGtgTt55B.1.780.042735
ORF3a172G172VgGtgTt44A0.001548
ORF3a172G172VgGtgTt44AY.1170.000338
ORF3a172G172VgGtgTt44AY.360.000593
ORF3a172G172VgGtgTt44AY.4.20.000087
ORF3a172G172VgGtgTt44AY.4.40.001637
ORF3a172G172VgGtgTt44AY.5.40.001107
ORF3a172G172VgGtgTt44AY.830.006897
ORF3a172G172VgGtgTt44AY.840.00175
ORF3a172G172VgGtgTt44B.1.1.630.001543
ORF3a172G172VgGtgTt44B.1.1240.03125
ORF3a172G172VgGtgTt44B.1.2100.008529
ORF3a172G172VgGtgTt44B.1.3300.114286
ORF3a172G172VgGtgTt44B.1.3620.006163
ORF3a172G172VgGtgTt44B.1.6090.001918
ORF3a172G172VgGtgTt44P.1.10.001271
ORF3a172G172VgGtgTt33AY.1010.001471
ORF3a172G172VgGtgTt33AY.1060.001005
ORF3a172G172VgGtgTt33AY.1080.003308
ORF3a172G172VgGtgTt33AY.120.10.000963
ORF3a172G172VgGtgTt33AY.130.000483
ORF3a172G172VgGtgTt33AY.4.2.10.000447
ORF3a172G172VgGtgTt33AY.520.002443
ORF3a172G172VgGtgTt33AY.9.10.000251
ORF3a172G172VgGtgTt33AY.920.000862
ORF3a172G172VgGtgTt33AY.950.002283
ORF3a172G172VgGtgTt33AY.99.20.000276
ORF3a172G172VgGtgTt33B.1.1.2740.015152
ORF3a172G172VgGtgTt33B.1.1.2940.003797
ORF3a172G172VgGtgTt33B.1.1260.003827
ORF3a172G172VgGtgTt33B.1.1570.008955
ORF3a172G172VgGtgTt33B.1.177.70.000495
ORF3a172G172VgGtgTt33B.1.2320.001612
ORF3a172G172VgGtgTt33B.1.2650.003812
ORF3a172G172VgGtgTt33B.1.2840.039474
ORF3a172G172VgGtgTt33B.1.3240.004815
ORF3a172G172VgGtgTt33B.1.36.290.001552
ORF3a172G172VgGtgTt33B.1.5170.001281
ORF3a172G172VgGtgTt33B.1.5250.000339
ORF3a172G172VgGtgTt33B.1.6060.018072
ORF3a172G172VgGtgTt33C.370.000348
ORF3a172G172VgGtgTt22A.2.5.20.003145
ORF3a172G172VgGtgTt22AD.20.000438
ORF3a172G172VgGtgTt22AE.80.000978
ORF3a172G172VgGtgTt22AY.10.000791
ORF3a172G172VgGtgTt22AY.1130.000285
ORF3a172G172VgGtgTt22AY.29.10.000441
ORF3a172G172VgGtgTt22AY.300.000791
ORF3a172G172VgGtgTt22AY.320.001065
ORF3a172G172VgGtgTt22AY.39.10.000079
ORF3a172G172VgGtgTt22AY.46.10.002053
ORF3a172G172VgGtgTt22AY.46.60.000144
ORF3a172G172VgGtgTt22AY.480.00093
ORF3a172G172VgGtgTt22AY.490.00639
ORF3a172G172VgGtgTt22AY.5.30.000675
ORF3a172G172VgGtgTt22AY.670.000929
ORF3a172G172VgGtgTt22AY.680.000547
ORF3a172G172VgGtgTt22AY.7.20.001119
ORF3a172G172VgGtgTt22AY.700.000417
ORF3a172G172VgGtgTt22AY.740.000231
ORF3a172G172VgGtgTt22AY.870.001665
ORF3a172G172VgGtgTt22AY.990.002099
ORF3a172G172VgGtgTt22B.1.1.100.00223
ORF3a172G172VgGtgTt22B.1.1.1920.004619
ORF3a172G172VgGtgTt22B.1.1.2070.002364
ORF3a172G172VgGtgTt22B.1.1.2160.001781
ORF3a172G172VgGtgTt22B.1.1.3390.021053
ORF3a172G172VgGtgTt22B.1.1.3720.001377
ORF3a172G172VgGtgTt22B.1.1.4090.005666
ORF3a172G172VgGtgTt22B.1.1.4160.00181
ORF3a172G172VgGtgTt22B.1.1.5070.017391
ORF3a172G172VgGtgTt22B.1.1890.008584
ORF3a172G172VgGtgTt22B.1.2210.000142
ORF3a172G172VgGtgTt22B.1.2390.002442
ORF3a172G172VgGtgTt22B.1.3360.004878
ORF3a172G172VgGtgTt22B.1.3370.011173
ORF3a172G172VgGtgTt22B.1.3550.022222
ORF3a172G172VgGtgTt22B.1.4040.002604
ORF3a172G172VgGtgTt22B.1.4620.014493
ORF3a172G172VgGtgTt22B.1.5610.000794
ORF3a172G172VgGtgTt22B.1.5660.038462
ORF3a172G172VgGtgTt22B.1.5690.028986
ORF3a172G172VgGtgTt22B.1.5890.015152
ORF3a172G172VgGtgTt22B.1.6050.011905
ORF3a172G172VgGtgTt22B.1.6230.001073
ORF3a172G172VgGtgTt22B.1.6310.006734
ORF3a172G172VgGtgTt22B.1.940.054054
ORF3a172G172VgGtgTt22B.40.004415
ORF3a172G172VgGtgTt22B.400.000729
ORF3a172G172VgGtgTt22C.37.10.005236
ORF3a172G172VgGtgTt22P.1.150.000465
ORF3a172G172VgGtgTt22P.1.160.000748
ORF3a172G172VgGtgTt22P.1.17.10.00175
ORF3a172G172VgGtgTt22P.20.000373
ORF3a172G172VgGtgTt22R.10.00018
ORF3a172G172VgGtgTt110.055556
ORF3a172G172VgGtgTt11A.23.10.000704
ORF3a172G172VgGtgTt11AH.20.012048
ORF3a172G172VgGtgTt11AY.100.00053
ORF3a172G172VgGtgTt11AY.1100.000113
ORF3a172G172VgGtgTt11AY.1160.000287
ORF3a172G172VgGtgTt11AY.190.00114
ORF3a172G172VgGtgTt11AY.240.000431
ORF3a172G172VgGtgTt11AY.380.000499
ORF3a172G172VgGtgTt11AY.4.50.000107
ORF3a172G172VgGtgTt11AY.400.000964
ORF3a172G172VgGtgTt11AY.46.20.000635
ORF3a172G172VgGtgTt11AY.46.40.000165
ORF3a172G172VgGtgTt11AY.46.50.000198
ORF3a172G172VgGtgTt11AY.530.000288
ORF3a172G172VgGtgTt11AY.560.001605
ORF3a172G172VgGtgTt11AY.580.000907
ORF3a172G172VgGtgTt11AY.60.000041
ORF3a172G172VgGtgTt11AY.630.000387
ORF3a172G172VgGtgTt11AY.710.000475
ORF3a172G172VgGtgTt11AY.730.000665
ORF3a172G172VgGtgTt11AY.880.000884
ORF3a172G172VgGtgTt11AY.910.00073
ORF3a172G172VgGtgTt11AY.930.000273
ORF3a172G172VgGtgTt11AY.940.000443
ORF3a172G172VgGtgTt11B.1.1.1210.002427
ORF3a172G172VgGtgTt11B.1.1.1570.000913
ORF3a172G172VgGtgTt11B.1.1.1610.003534
ORF3a172G172VgGtgTt11B.1.1.1980.001468
ORF3a172G172VgGtgTt11B.1.1.2030.016949
ORF3a172G172VgGtgTt11B.1.1.2100.005714
ORF3a172G172VgGtgTt11B.1.1.2200.001859
ORF3a172G172VgGtgTt11B.1.1.2250.007194
ORF3a172G172VgGtgTt11B.1.1.2300.009174
ORF3a172G172VgGtgTt11B.1.1.2310.003096
ORF3a172G172VgGtgTt11B.1.1.2580.003257
ORF3a172G172VgGtgTt11B.1.1.2680.014925
ORF3a172G172VgGtgTt11B.1.1.2690.001353
ORF3a172G172VgGtgTt11B.1.1.3010.001179
ORF3a172G172VgGtgTt11B.1.1.3170.000412
ORF3a172G172VgGtgTt11B.1.1.3180.000302
ORF3a172G172VgGtgTt11B.1.1.3220.008772
ORF3a172G172VgGtgTt11B.1.1.330.000421
ORF3a172G172VgGtgTt11B.1.1.3700.012658
ORF3a172G172VgGtgTt11B.1.1.3710.010417
ORF3a172G172VgGtgTt11B.1.1.4210.030303
ORF3a172G172VgGtgTt11B.1.1.4320.001266
ORF3a172G172VgGtgTt11B.1.1.440.00241
ORF3a172G172VgGtgTt11B.1.1.4420.018519
ORF3a172G172VgGtgTt11B.1.1.4480.002033
ORF3a172G172VgGtgTt11B.1.1.4660.008696
ORF3a172G172VgGtgTt11B.1.1.5180.006329
ORF3a172G172VgGtgTt11B.1.1.5260.003546
ORF3a172G172VgGtgTt11B.1.1.830.00271
ORF3a172G172VgGtgTt11B.1.110.30.000718
ORF3a172G172VgGtgTt11B.1.1470.000756
ORF3a172G172VgGtgTt11B.1.177.750.001041
ORF3a172G172VgGtgTt11B.1.177.770.000726
ORF3a172G172VgGtgTt11B.1.177.790.002342
ORF3a172G172VgGtgTt11B.1.177.90.001332
ORF3a172G172VgGtgTt11B.1.2360.002053
ORF3a172G172VgGtgTt11B.1.2410.000812
ORF3a172G172VgGtgTt11B.1.2580.000067
ORF3a172G172VgGtgTt11B.1.258.140.00098
ORF3a172G172VgGtgTt11B.1.2640.012346
ORF3a172G172VgGtgTt11B.1.2790.000514
ORF3a172G172VgGtgTt11B.1.3060.005714
ORF3a172G172VgGtgTt11B.1.3250.006897
ORF3a172G172VgGtgTt11B.1.3260.007576
ORF3a172G172VgGtgTt11B.1.3400.004292
ORF3a172G172VgGtgTt11B.1.3540.043478
ORF3a172G172VgGtgTt11B.1.36.70.004
ORF3a172G172VgGtgTt11B.1.3610.001289
ORF3a172G172VgGtgTt11B.1.3700.008
ORF3a172G172VgGtgTt11B.1.3780.006849
ORF3a172G172VgGtgTt11B.1.3800.006623
ORF3a172G172VgGtgTt11B.1.3950.007042
ORF3a172G172VgGtgTt11B.1.4000.000429
ORF3a172G172VgGtgTt11B.1.4090.000781
ORF3a172G172VgGtgTt11B.1.4130.004255
ORF3a172G172VgGtgTt11B.1.4170.028571
ORF3a172G172VgGtgTt11B.1.4230.010204
ORF3a172G172VgGtgTt11B.1.4260.001009
ORF3a172G172VgGtgTt11B.1.4320.011236
ORF3a172G172VgGtgTt11B.1.4330.003195
ORF3a172G172VgGtgTt11B.1.4500.011364
ORF3a172G172VgGtgTt11B.1.4530.003236
ORF3a172G172VgGtgTt11B.1.4630.008065
ORF3a172G172VgGtgTt11B.1.466.20.000391
ORF3a172G172VgGtgTt11B.1.4850.014925
ORF3a172G172VgGtgTt11B.1.4870.019608
ORF3a172G172VgGtgTt11B.1.5090.000866
ORF3a172G172VgGtgTt11B.1.5110.034483
ORF3a172G172VgGtgTt11B.1.5210.004975
ORF3a172G172VgGtgTt11B.1.5460.003704
ORF3a172G172VgGtgTt11B.1.5500.013699
ORF3a172G172VgGtgTt11B.1.5510.00129
ORF3a172G172VgGtgTt11B.1.5580.004566
ORF3a172G172VgGtgTt11B.1.5650.00081
ORF3a172G172VgGtgTt11B.1.5740.002151
ORF3a172G172VgGtgTt11B.1.5880.00091
ORF3a172G172VgGtgTt11B.1.5930.01087
ORF3a172G172VgGtgTt11B.1.5990.00365
ORF3a172G172VgGtgTt11B.1.6110.04
ORF3a172G172VgGtgTt11B.1.6210.000089
ORF3a172G172VgGtgTt11B.1.621.10.000506
ORF3a172G172VgGtgTt11B.1.6250.002353
ORF3a172G172VgGtgTt11B.1.6280.000352
ORF3a172G172VgGtgTt11B.1.6330.041667
ORF3a172G172VgGtgTt11B.1.670.043478
ORF3a172G172VgGtgTt11B.1.88.10.004808
ORF3a172G172VgGtgTt11B.130.045455
ORF3a172G172VgGtgTt11B.6.30.026316
ORF3a172G172VgGtgTt11C.350.000774
ORF3a172G172VgGtgTt11C.360.000911
ORF3a172G172VgGtgTt11C.40.01
ORF3a172G172VgGtgTt11N.50.001767
ORF3a172G172VgGtgTt11N.90.005952
ORF3a172G172VgGtgTt11P.1.130.000898
ORF3a172G172VgGtgTt11P.1.170.000162
ORF3a172G172VgGtgTt11P.1.70.000319
ORF3a172G172VgGtgTt11Q.20.000613
ORF3a172G172VgGtgTt11Q.30.000145
ORF3a172G172VgGtgTt11Q.40.000455
ORF3a172G172VgGtgTt11Q.60.006623
ORF3a172G172VgGtgTt11Q.80.000165
ORF3a172G172VgGtgTt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.