CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 172 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a172G172CnonsynGgtTgt1493514935125906-25908

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a172G172CGgtTgt1493514935All0.002856
ORF3a172G172CGgtTgt29892989B.1.1.70.002676
ORF3a172G172CGgtTgt28662866AY.40.004461
ORF3a172G172CGgtTgt13661366B.1.1.5190.054245
ORF3a172G172CGgtTgt836836B.1.214.20.501199
ORF3a172G172CGgtTgt714714P.1.140.03413
ORF3a172G172CGgtTgt550550AY.440.003348
ORF3a172G172CGgtTgt401401B.1.617.20.00151
ORF3a172G172CGgtTgt328328AW.11
ORF3a172G172CGgtTgt284284AY.4.20.00616
ORF3a172G172CGgtTgt283283B.1.10.005134
ORF3a172G172CGgtTgt257257C.160.272534
ORF3a172G172CGgtTgt232232AY.340.022496
ORF3a172G172CGgtTgt214214AY.250.001287
ORF3a172G172CGgtTgt200200B.10.001832
ORF3a172G172CGgtTgt167167AY.430.00074
ORF3a172G172CGgtTgt143143B.1.1.3040.401685
ORF3a172G172CGgtTgt143143B.1.1.5260.507092
ORF3a172G172CGgtTgt127127P.10.002001
ORF3a172G172CGgtTgt121121B.1.1770.001593
ORF3a172G172CGgtTgt111111B.1.360.016195
ORF3a172G172CGgtTgt104104B.1.1.280.032369
ORF3a172G172CGgtTgt104104B.1.5250.011769
ORF3a172G172CGgtTgt103103AY.70.020188
ORF3a172G172CGgtTgt103103B.1.3510.003062
ORF3a172G172CGgtTgt9292B.1.177.570.02585
ORF3a172G172CGgtTgt9090AY.1020.002386
ORF3a172G172CGgtTgt8989AY.1030.000553
ORF3a172G172CGgtTgt8686B.1.2580.005723
ORF3a172G172CGgtTgt5757AY.46.30.053221
ORF3a172G172CGgtTgt5656B.1.1.3170.023055
ORF3a172G172CGgtTgt5555AY.1190.001942
ORF3a172G172CGgtTgt4949AY.460.0051
ORF3a172G172CGgtTgt4848AY.390.001186
ORF3a172G172CGgtTgt4848P.50.657534
ORF3a172G172CGgtTgt4747AY.30.000467
ORF3a172G172CGgtTgt4646AY.290.000726
ORF3a172G172CGgtTgt4646AY.50.00095
ORF3a172G172CGgtTgt4141B.1.3490.029307
ORF3a172G172CGgtTgt3737AY.1000.001702
ORF3a172G172CGgtTgt3636AY.46.60.002599
ORF3a172G172CGgtTgt3333AY.1110.006044
ORF3a172G172CGgtTgt3333B.1.4290.000776
ORF3a172G172CGgtTgt3333C.370.00383
ORF3a172G172CGgtTgt3232AY.7.10.003606
ORF3a172G172CGgtTgt2929B.1.1600.000904
ORF3a172G172CGgtTgt2626AY.200.00101
ORF3a172G172CGgtTgt2626B.1.1.4640.038292
ORF3a172G172CGgtTgt2424B.1.6370.001754
ORF3a172G172CGgtTgt2323B.1.1.250.013076
ORF3a172G172CGgtTgt2323B.1.1.2510.18254
ORF3a172G172CGgtTgt2323B.1.1.330.00968
ORF3a172G172CGgtTgt2121AY.1200.000781
ORF3a172G172CGgtTgt2121B.1.1.2220.004284
ORF3a172G172CGgtTgt2020B.1.2430.001392
ORF3a172G172CGgtTgt1919B.1.4270.000959
ORF3a172G172CGgtTgt1717AY.260.000481
ORF3a172G172CGgtTgt1717AY.9.20.000624
ORF3a172G172CGgtTgt1717B.1.177.350.011748
ORF3a172G172CGgtTgt1616AY.330.001068
ORF3a172G172CGgtTgt1616AY.610.001676
ORF3a172G172CGgtTgt1616B.1.214.30.114286
ORF3a172G172CGgtTgt1616B.1.3960.011291
ORF3a172G172CGgtTgt1616B.1.4090.0125
ORF3a172G172CGgtTgt1515AY.1210.00203
ORF3a172G172CGgtTgt1515AY.99.20.001382
ORF3a172G172CGgtTgt1414AY.470.000435
ORF3a172G172CGgtTgt1212AY.450.00146
ORF3a172G172CGgtTgt1212AY.5.30.004049
ORF3a172G172CGgtTgt1212AY.880.01061
ORF3a172G172CGgtTgt1212B.1.1.3220.105263
ORF3a172G172CGgtTgt1111AY.580.009982
ORF3a172G172CGgtTgt1111AY.690.002053
ORF3a172G172CGgtTgt1111B.1.177.750.011446
ORF3a172G172CGgtTgt1010AY.230.000697
ORF3a172G172CGgtTgt1010AY.46.50.001984
ORF3a172G172CGgtTgt1010AY.98.10.000484
ORF3a172G172CGgtTgt1010B.1.5260.000235
ORF3a172G172CGgtTgt1010B.1.6210.000885
ORF3a172G172CGgtTgt99AY.1010.004414
ORF3a172G172CGgtTgt99AY.1170.000761
ORF3a172G172CGgtTgt99B.1.1.100.010033
ORF3a172G172CGgtTgt99B.1.1.1890.013616
ORF3a172G172CGgtTgt99B.1.1.2200.016729
ORF3a172G172CGgtTgt99B.1.1.2770.006829
ORF3a172G172CGgtTgt99B.1.2790.004622
ORF3a172G172CGgtTgt99Q.80.001484
ORF3a172G172CGgtTgt88AY.420.000322
ORF3a172G172CGgtTgt88AY.9.10.00067
ORF3a172G172CGgtTgt77AY.1060.002344
ORF3a172G172CGgtTgt77AY.39.10.000277
ORF3a172G172CGgtTgt77B.1.36.380.011494
ORF3a172G172CGgtTgt77B.1.4390.04142
ORF3a172G172CGgtTgt77B.1.4700.009831
ORF3a172G172CGgtTgt77B.400.00255
ORF3a172G172CGgtTgt77C.360.006375
ORF3a172G172CGgtTgt77P.20.001306
ORF3a172G172CGgtTgt66AY.1070.002796
ORF3a172G172CGgtTgt66AY.750.000336
ORF3a172G172CGgtTgt66AY.900.004107
ORF3a172G172CGgtTgt66AZ.20.004926
ORF3a172G172CGgtTgt66B.1.1.10.00196
ORF3a172G172CGgtTgt66B.1.1.3060.00263
ORF3a172G172CGgtTgt66B.1.177.860.001101
ORF3a172G172CGgtTgt66B.1.4160.007614
ORF3a172G172CGgtTgt66B.1.4380.039216
ORF3a172G172CGgtTgt66B.1.6280.002114
ORF3a172G172CGgtTgt66P.1.70.001916
ORF3a172G172CGgtTgt55AY.1090.003698
ORF3a172G172CGgtTgt55AY.1160.001434
ORF3a172G172CGgtTgt55AY.140.00044
ORF3a172G172CGgtTgt55AY.300.001979
ORF3a172G172CGgtTgt55AY.46.20.003177
ORF3a172G172CGgtTgt55B.1.2210.000355
ORF3a172G172CGgtTgt55B.1.2400.001078
ORF3a172G172CGgtTgt55B.1.617.10.000645
ORF3a172G172CGgtTgt55B.230.01462
ORF3a172G172CGgtTgt55B.6.60.004444
ORF3a172G172CGgtTgt44AY.1130.00057
ORF3a172G172CGgtTgt44AY.350.000932
ORF3a172G172CGgtTgt44AY.550.00367
ORF3a172G172CGgtTgt44AY.75.10.000721
ORF3a172G172CGgtTgt44AY.920.001149
ORF3a172G172CGgtTgt44AY.980.000316
ORF3a172G172CGgtTgt44B.1.1.2690.005413
ORF3a172G172CGgtTgt44B.1.1.3180.001207
ORF3a172G172CGgtTgt44B.1.160.250.044444
ORF3a172G172CGgtTgt44B.1.177.420.003578
ORF3a172G172CGgtTgt44B.1.2340.000528
ORF3a172G172CGgtTgt44B.1.36.100.019139
ORF3a172G172CGgtTgt44B.1.36.290.002069
ORF3a172G172CGgtTgt44R.10.00036
ORF3a172G172CGgtTgt33AY.1050.001929
ORF3a172G172CGgtTgt33AY.270.000194
ORF3a172G172CGgtTgt33AY.280.005671
ORF3a172G172CGgtTgt33AY.3.10.000256
ORF3a172G172CGgtTgt33AY.34.10.00153
ORF3a172G172CGgtTgt33AY.360.000445
ORF3a172G172CGgtTgt33AY.4.2.10.000447
ORF3a172G172CGgtTgt33AY.4.50.000322
ORF3a172G172CGgtTgt33AY.590.001589
ORF3a172G172CGgtTgt33B.1.1.2140.000166
ORF3a172G172CGgtTgt33B.1.1.2310.009288
ORF3a172G172CGgtTgt33B.1.1.460.0131
ORF3a172G172CGgtTgt33B.1.177.600.000655
ORF3a172G172CGgtTgt33B.1.177.690.004451
ORF3a172G172CGgtTgt33B.1.177.810.000568
ORF3a172G172CGgtTgt33B.1.177.830.004444
ORF3a172G172CGgtTgt33B.1.214.10.06
ORF3a172G172CGgtTgt33B.1.2410.002435
ORF3a172G172CGgtTgt33B.1.258.170.000312
ORF3a172G172CGgtTgt33B.1.466.20.001174
ORF3a172G172CGgtTgt33B.1.5600.013889
ORF3a172G172CGgtTgt33B.1.6090.001438
ORF3a172G172CGgtTgt33B.390.006993
ORF3a172G172CGgtTgt22A.23.10.001408
ORF3a172G172CGgtTgt22A.270.003311
ORF3a172G172CGgtTgt22A.50.003846
ORF3a172G172CGgtTgt22AF.10.074074
ORF3a172G172CGgtTgt22AY.1180.000125
ORF3a172G172CGgtTgt22AY.120.000632
ORF3a172G172CGgtTgt22AY.240.000862
ORF3a172G172CGgtTgt22AY.29.10.000441
ORF3a172G172CGgtTgt22AY.320.001065
ORF3a172G172CGgtTgt22AY.540.000191
ORF3a172G172CGgtTgt22AY.60.000082
ORF3a172G172CGgtTgt22AY.710.00095
ORF3a172G172CGgtTgt22AY.730.001331
ORF3a172G172CGgtTgt22AY.840.000875
ORF3a172G172CGgtTgt22B0.000256
ORF3a172G172CGgtTgt22B.1.1.1600.047619
ORF3a172G172CGgtTgt22B.1.1.2840.000215
ORF3a172G172CGgtTgt22B.1.1.3540.008772
ORF3a172G172CGgtTgt22B.1.1.4480.004065
ORF3a172G172CGgtTgt22B.1.1.4870.011173
ORF3a172G172CGgtTgt22B.1.1.530.027397
ORF3a172G172CGgtTgt22B.1.1700.008621
ORF3a172G172CGgtTgt22B.1.20.000018
ORF3a172G172CGgtTgt22B.1.2500.028986
ORF3a172G172CGgtTgt22B.1.351.20.000605
ORF3a172G172CGgtTgt22B.1.351.30.001753
ORF3a172G172CGgtTgt22B.1.3670.001585
ORF3a172G172CGgtTgt22B.1.3690.00057
ORF3a172G172CGgtTgt22B.1.3930.057143
ORF3a172G172CGgtTgt22B.1.4450.023529
ORF3a172G172CGgtTgt22B.1.4480.005249
ORF3a172G172CGgtTgt22B.1.4560.006536
ORF3a172G172CGgtTgt22B.1.4590.008163
ORF3a172G172CGgtTgt22B.1.5240.002813
ORF3a172G172CGgtTgt22B.1.5440.012048
ORF3a172G172CGgtTgt22B.1.5750.000607
ORF3a172G172CGgtTgt22B.1.5760.001813
ORF3a172G172CGgtTgt22B.1.5950.000522
ORF3a172G172CGgtTgt22B.1.6100.007092
ORF3a172G172CGgtTgt22B.1.80.003945
ORF3a172G172CGgtTgt22B.60.00182
ORF3a172G172CGgtTgt22C.36.30.001134
ORF3a172G172CGgtTgt22C.390.037736
ORF3a172G172CGgtTgt22N.50.003534
ORF3a172G172CGgtTgt22P.1.10.000635
ORF3a172G172CGgtTgt22P.1.150.000465
ORF3a172G172CGgtTgt22P.1.170.000324
ORF3a172G172CGgtTgt22P.30.00319
ORF3a172G172CGgtTgt22Q.30.00029
ORF3a172G172CGgtTgt11A0.000387
ORF3a172G172CGgtTgt11A.2.50.000499
ORF3a172G172CGgtTgt11AD.20.000219
ORF3a172G172CGgtTgt11AE.10.011364
ORF3a172G172CGgtTgt11AL.10.012987
ORF3a172G172CGgtTgt11AY.100.00053
ORF3a172G172CGgtTgt11AY.116.10.000311
ORF3a172G172CGgtTgt11AY.120.10.000321
ORF3a172G172CGgtTgt11AY.130.000161
ORF3a172G172CGgtTgt11AY.160.00038
ORF3a172G172CGgtTgt11AY.16.10.00047
ORF3a172G172CGgtTgt11AY.380.000499
ORF3a172G172CGgtTgt11AY.39.20.001541
ORF3a172G172CGgtTgt11AY.4.10.000737
ORF3a172G172CGgtTgt11AY.520.000814
ORF3a172G172CGgtTgt11AY.650.000533
ORF3a172G172CGgtTgt11AY.700.000209
ORF3a172G172CGgtTgt11AY.740.000116
ORF3a172G172CGgtTgt11AY.770.001127
ORF3a172G172CGgtTgt11AY.850.000427
ORF3a172G172CGgtTgt11AY.90.000068
ORF3a172G172CGgtTgt11AY.910.00073
ORF3a172G172CGgtTgt11AY.950.000761
ORF3a172G172CGgtTgt11AY.970.001701
ORF3a172G172CGgtTgt11AY.990.001049
ORF3a172G172CGgtTgt11AY.99.10.001553
ORF3a172G172CGgtTgt11B.1.1.1210.002427
ORF3a172G172CGgtTgt11B.1.1.1280.007092
ORF3a172G172CGgtTgt11B.1.1.1410.002012
ORF3a172G172CGgtTgt11B.1.1.1860.003436
ORF3a172G172CGgtTgt11B.1.1.2540.011236
ORF3a172G172CGgtTgt11B.1.1.2610.008621
ORF3a172G172CGgtTgt11B.1.1.2670.010101
ORF3a172G172CGgtTgt11B.1.1.2940.001266
ORF3a172G172CGgtTgt11B.1.1.2980.000862
ORF3a172G172CGgtTgt11B.1.1.3510.002793
ORF3a172G172CGgtTgt11B.1.1.3720.000689
ORF3a172G172CGgtTgt11B.1.1.3760.005952
ORF3a172G172CGgtTgt11B.1.1.4160.000905
ORF3a172G172CGgtTgt11B.1.1.4250.045455
ORF3a172G172CGgtTgt11B.1.1.5210.005348
ORF3a172G172CGgtTgt11B.1.1.5280.004808
ORF3a172G172CGgtTgt11B.1.1.80.003584
ORF3a172G172CGgtTgt11B.1.130.002375
ORF3a172G172CGgtTgt11B.1.1570.002985
ORF3a172G172CGgtTgt11B.1.160.320.004292
ORF3a172G172CGgtTgt11B.1.1640.014925
ORF3a172G172CGgtTgt11B.1.177.120.000152
ORF3a172G172CGgtTgt11B.1.177.150.000631
ORF3a172G172CGgtTgt11B.1.177.200.001517
ORF3a172G172CGgtTgt11B.1.177.630.002703
ORF3a172G172CGgtTgt11B.1.177.790.002342
ORF3a172G172CGgtTgt11B.1.177.840.006667
ORF3a172G172CGgtTgt11B.1.2060.000816
ORF3a172G172CGgtTgt11B.1.221.30.000833
ORF3a172G172CGgtTgt11B.1.258.140.00098
ORF3a172G172CGgtTgt11B.1.351.50.0006
ORF3a172G172CGgtTgt11B.1.36.170.000494
ORF3a172G172CGgtTgt11B.1.36.180.00042
ORF3a172G172CGgtTgt11B.1.36.240.006173
ORF3a172G172CGgtTgt11B.1.3710.001122
ORF3a172G172CGgtTgt11B.1.3970.004854
ORF3a172G172CGgtTgt11B.1.416.10.001563
ORF3a172G172CGgtTgt11B.1.438.10.000107
ORF3a172G172CGgtTgt11B.1.4430.004673
ORF3a172G172CGgtTgt11B.1.4620.007246
ORF3a172G172CGgtTgt11B.1.4680.005714
ORF3a172G172CGgtTgt11B.1.4800.002488
ORF3a172G172CGgtTgt11B.1.4970.000315
ORF3a172G172CGgtTgt11B.1.4990.00105
ORF3a172G172CGgtTgt11B.1.5210.004975
ORF3a172G172CGgtTgt11B.1.5270.003704
ORF3a172G172CGgtTgt11B.1.5300.007143
ORF3a172G172CGgtTgt11B.1.5330.009615
ORF3a172G172CGgtTgt11B.1.5400.009709
ORF3a172G172CGgtTgt11B.1.5650.00081
ORF3a172G172CGgtTgt11B.1.6030.010638
ORF3a172G172CGgtTgt11B.1.621.10.000506
ORF3a172G172CGgtTgt11B.1.780.008547
ORF3a172G172CGgtTgt11B.1.940.027027
ORF3a172G172CGgtTgt11B.4.10.018868
ORF3a172G172CGgtTgt11C.30.007634
ORF3a172G172CGgtTgt11C.37.10.002618
ORF3a172G172CGgtTgt11D.20.000075
ORF3a172G172CGgtTgt11D.50.004975
ORF3a172G172CGgtTgt11P.1.120.000484
ORF3a172G172CGgtTgt11P.1.130.000898
ORF3a172G172CGgtTgt11P.1.20.001156
ORF3a172G172CGgtTgt11P.70.004367
ORF3a172G172CGgtTgt11Q.10.000126
ORF3a172G172CGgtTgt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.