CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 171

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a171S171LnonsyntCatTa59128591220.99989925903-25905
ORF3a171S171LnonsyntCAtTG5912840.000067649825903-25905
ORF3a171S171LnonsynTCaCTa5912820.000033824925903-25905
ORF3a171S171SsyntcAtcT5572760.49551225903-25905
ORF3a171S171SsyntcAtcG5572350.42190325903-25905
ORF3a171S171SsyntcAtcC557460.082585325903-25905
ORF3a171S171AnonsynTcaGca2422410.99586825903-25905
ORF3a171S171AnonsynTcAGcG24210.0041322325903-25905
ORF3a171S171del1deltcAtc-80780.97525903-25905
ORF3a171S171del1deltCat-a8010.012525903-25905
ORF3a171S171del1delTca-ca8010.012525903-25905
ORF3a171S171PnonsynTcaCca6161125903-25905
ORF3a171S171deldelTCA---4949125903-25905
ORF3a171S171TnonsynTcaAca30290.96666725903-25905
ORF3a171S171TnonsynTcAAcG3010.033333325903-25905
ORF3a171S171XnonsyntCatAa870.87525903-25905
ORF3a171S171XnonsyntCatGa810.12525903-25905
ORF3a171S171del2deltCAt--630.525903-25905
ORF3a171S171del2delTCa--a630.525903-25905
ORF3a171S171VnonsynTCAGTG210.525903-25905
ORF3a171S171VnonsynTCaGTa210.525903-25905
ORF3a171S171InonsynTCaATa11125903-25905
ORF3a171S171FnonsyntCAtTT11125903-25905
ORF3a171S171MnonsynTCAATG11125903-25905

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a171S171LtCatTa5912259128All0.011308
ORF3a171S171LtCAtTG459128All0.000001
ORF3a171S171LTCaCTa259128All0
ORF3a171S171LtCatTa3082430827B.1.3510.91629
ORF3a171S171LtCAtTG230827B.1.3510.000059
ORF3a171S171LTCaCTa130827B.1.3510.00003
ORF3a171S171LtCatTa51385138B.1.1.70.0046
ORF3a171S171LtCatTa32353235B.1.351.20.97882
ORF3a171S171LtCatTa18801880AY.40.002926
ORF3a171S171LtCatTa16151616B.1.351.50.968225
ORF3a171S171LtCAtTG11616B.1.351.50.0006
ORF3a171S171LtCatTa12491249B.1.617.20.004703
ORF3a171S171LtCatTa11181118B.1.351.30.979842
ORF3a171S171LtCatTa898898B.10.008225
ORF3a171S171LtCatTa760760B.1.1770.010007
ORF3a171S171LtCatTa660660AY.1000.030364
ORF3a171S171LtCatTa596596B.1.1.5230.93125
ORF3a171S171StcAtcT276557All0.000053
ORF3a171S171StcAtcG235557All0.000045
ORF3a171S171StcAtcC46557All0.000009
ORF3a171S171LtCatTa550550N.50.971731
ORF3a171S171LtCatTa535535AY.430.00237
ORF3a171S171LtCatTa473473B.1.10.008581
ORF3a171S171LtCatTa469469P.10.007389
ORF3a171S171LtCatTa458458B.1.1.500.31093
ORF3a171S171LtCatTa449449AY.250.002701
ORF3a171S171LtCatTa434434B.1.36.390.962306
ORF3a171S171LtCatTa415415B.1.20.003654
ORF3a171S171LtCatTa402402B.1.2580.026752
ORF3a171S171LtCatTa366366A.280.968254
ORF3a171S171LtCatTa295295B.1.5950.076983
ORF3a171S171StcAtcT176280B.1.1.70.000158
ORF3a171S171StcAtcG80280B.1.1.70.000072
ORF3a171S171StcAtcC24280B.1.1.70.000021
ORF3a171S171LtCatTa270270B.1.5820.132483
ORF3a171S171LtCatTa248248B.1.1490.849315
ORF3a171S171LtCatTa244244AY.1030.001515
ORF3a171S171ATcaGca241242All0.000046
ORF3a171S171ATcAGcG1242All0
ORF3a171S171LtCatTa216217B.1.1.250.122797
ORF3a171S171LTCaCTa1217B.1.1.250.000569
ORF3a171S171LtCatTa207207B.1.1.2220.042228
ORF3a171S171LtCatTa200200P.1.140.00956
ORF3a171S171LtCatTa199199D.50.99005
ORF3a171S171LtCatTa190190AY.30.00189
ORF3a171S171LtCatTa187187AY.90.01264
ORF3a171S171LtCatTa159159AY.980.01256
ORF3a171S171ATcaGca144144AY.1180.009021
ORF3a171S171LtCatTa135135B.1.1700.581897
ORF3a171S171LtCatTa135135C.360.122951
ORF3a171S171LtCatTa124124AY.1180.007768
ORF3a171S171LtCatTa104104B.1.5260.002444
ORF3a171S171LtCatTa102102AY.440.000621
ORF3a171S171LtCatTa9898AY.1060.03282
ORF3a171S171LtCatTa9191B.1.4230.928571
ORF3a171S171del1tcAtc-7880All0.000015
ORF3a171S171del1Tca-ca180All0
ORF3a171S171del1tCat-a180All0
ORF3a171S171LtCatTa7979B.1.4290.001859
ORF3a171S171LtCatTa7575B.1.1.5190.002978
ORF3a171S171LtCatTa7373AY.390.001804
ORF3a171S171LtCatTa7373B.1.2390.089133
ORF3a171S171LtCatTa6969B.1.243.21
ORF3a171S171del1tcAtc-6667B.1.1.70.000059
ORF3a171S171del1Tca-ca167B.1.1.70.000001
ORF3a171S171LtCatTa6767B.1.360.009775
ORF3a171S171LtCatTa6565B.1.1.2740.328283
ORF3a171S171LtCatTa6565B.1.1600.002027
ORF3a171S171PTcaCca6161All0.000012
ORF3a171S171LtCatTa5959AY.50.001218
ORF3a171S171LtCatTa5858AY.200.002254
ORF3a171S171LtCatTa5757B.1.5630.966102
ORF3a171S171LtCatTa5555B.1.4380.359477
ORF3a171S171LtCatTa5454B.1.1.3280.915254
ORF3a171S171LtCatTa5252AY.1020.001379
ORF3a171S171StcAtcG4952AY.250.000295
ORF3a171S171StcAtcT352AY.250.000018
ORF3a171S171LtCatTa5151AY.4.20.001106
ORF3a171S171LtCatTa5050B.1.1.3980.16129
ORF3a171S171LtCatTa5050B.1.4270.002525
ORF3a171S171delTCA---4949All0.000009
ORF3a171S171LtCatTa4949B.1.258.170.005095
ORF3a171S171LtCatTa4848B.1.177.160.031894
ORF3a171S171LtCatTa4141B.1.3960.028934
ORF3a171S171LtCatTa4040B.1.1.3060.017536
ORF3a171S171LtCatTa3838B.1.1.330.015993
ORF3a171S171LtCatTa3737A.290.196809
ORF3a171S171LtCatTa3737B.1.6210.003275
ORF3a171S171LtCatTa3636B.1.1.2310.111455
ORF3a171S171LtCatTa3535B.1.1.3850.15625
ORF3a171S171LtCatTa3434AY.3.10.002899
ORF3a171S171LtCatTa3434B0.004346
ORF3a171S171LtCatTa3131B.1.5960.002701
ORF3a171S171TTcaAca2930All0.000006
ORF3a171S171TTcAAcG130All0
ORF3a171S171LtCatTa3030Q.10.00379
ORF3a171S171LtCatTa2929AY.460.003018
ORF3a171S171LtCatTa2929AY.9.20.001065
ORF3a171S171LtCatTa2929AY.99.20.002673
ORF3a171S171LtCatTa2929B.1.6200.027436
ORF3a171S171LtCatTa2929B.1.6370.002119
ORF3a171S171LtCatTa2727A0.010449
ORF3a171S171LtCatTa2626AY.34.10.013259
ORF3a171S171LtCatTa2626B.1.6090.012464
ORF3a171S171LtCatTa2525AY.140.0022
ORF3a171S171StcAtcT2025AY.40.000031
ORF3a171S171StcAtcG425AY.40.000006
ORF3a171S171StcAtcC125AY.40.000002
ORF3a171S171LtCatTa2424AY.9.2.10.047431
ORF3a171S171LtCatTa2323AY.330.001536
ORF3a171S171LtCatTa2323AY.46.60.001661
ORF3a171S171LtCatTa2222B.1.5240.030942
ORF3a171S171StcAtcG1822P.10.000284
ORF3a171S171StcAtcC422P.10.000063
ORF3a171S171LtCatTa2121AY.60.000864
ORF3a171S171LtCatTa2020AY.1130.002848
ORF3a171S171PTcaCca2020AY.40.000031
ORF3a171S171LtCatTa1919AY.470.000591
ORF3a171S171LtCatTa1919B.1.4700.026685
ORF3a171S171StcAtcT1519B.1.617.20.000056
ORF3a171S171StcAtcG419B.1.617.20.000015
ORF3a171S171ATcaGca1919B.1.6370.001388
ORF3a171S171LtCatTa1818AY.290.000284
ORF3a171S171LtCatTa1616AY.230.001116
ORF3a171S171LtCatTa1616AY.39.10.000634
ORF3a171S171LtCatTa1616AZ.20.013136
ORF3a171S171LtCatTa1616B.1.1.3170.006587
ORF3a171S171LtCatTa1616B.1.2190.150943
ORF3a171S171LtCatTa1515AY.1110.002747
ORF3a171S171LtCatTa1515AY.260.000425
ORF3a171S171LtCatTa1515B.1.36.180.006303
ORF3a171S171LtCatTa1515B.1.5250.001697
ORF3a171S171LtCatTa1515D.41
ORF3a171S171LtCatTa1414AY.1170.001183
ORF3a171S171ATcaGca1414AY.250.000084
ORF3a171S171LtCatTa1414B.1.177.120.002124
ORF3a171S171LtCatTa1414B.1.177.860.002568
ORF3a171S171LtCatTa1414B.1.2430.000974
ORF3a171S171LtCatTa1414B.1.3010.08284
ORF3a171S171LtCatTa1414B.1.5770.009622
ORF3a171S171LtCatTa1414B.1.6190.012195
ORF3a171S171LtCatTa1414P.1.40.013672
ORF3a171S171LtCatTa1313B.1.1.1280.092199
ORF3a171S171ATcaGca1313B.1.1.70.000012
ORF3a171S171LtCatTa1313C.370.001509
ORF3a171S171LtCatTa1313P.1.20.015029
ORF3a171S171LtCatTa1313Q.80.002144
ORF3a171S171LtCatTa1212AY.70.002352
ORF3a171S171LtCatTa1212B.1.1.2140.000665
ORF3a171S171LtCatTa1212B.1.1.630.00463
ORF3a171S171LtCatTa1212B.1.177.210.000918
ORF3a171S171StcAtcG1212B.1.177.810.002272
ORF3a171S171LtCatTa1212B.1.438.10.001287
ORF3a171S171LtCatTa1111AD.20.002409
ORF3a171S171LtCatTa1111AY.1190.000388
ORF3a171S171StcAtcT1111AY.340.001067
ORF3a171S171StcAtcT711AY.430.000031
ORF3a171S171StcAtcG311AY.430.000013
ORF3a171S171StcAtcC111AY.430.000004
ORF3a171S171LtCatTa1111AY.98.10.000533
ORF3a171S171LtCatTa1111B.1.1.10.003594
ORF3a171S171LtCatTa1111B.1.1.1590.051402
ORF3a171S171LtCatTa1111B.1.5540.048458
ORF3a171S171LtCatTa1111B.1.6390.23913
ORF3a171S171LtCatTa1111P.1.100.002964
ORF3a171S171LtCatTa1111P.1.120.005324
ORF3a171S171LtCatTa1111R.10.00099
ORF3a171S171LtCatTa1010AY.340.00097
ORF3a171S171StcAtcT810AY.4.20.000174
ORF3a171S171StcAtcG210AY.4.20.000043
ORF3a171S171LtCatTa1010AY.450.001217
ORF3a171S171StcAtcT710B.10.000064
ORF3a171S171StcAtcG310B.10.000027
ORF3a171S171LtCatTa1010B.1.1.1980.014684
ORF3a171S171LtCatTa1010B.1.1.280.003112
ORF3a171S171LtCatTa1010B.1.1.3260.017606
ORF3a171S171LtCatTa1010B.1.1.5160.666667
ORF3a171S171ATcaGca1010B.1.1.630.003858
ORF3a171S171delTCA---1010B.1.1.70.000009
ORF3a171S171LtCatTa1010B.1.2210.00071
ORF3a171S171LtCatTa1010B.1.369.10.27027
ORF3a171S171ATcaGca99AY.440.000055
ORF3a171S171LtCatTa99AY.540.000858
ORF3a171S171LtCatTa99B.1.1.2650.028391
ORF3a171S171LtCatTa99B.1.177.730.005096
ORF3a171S171LtCatTa99B.1.2230.025
ORF3a171S171LtCatTa99B.1.2650.011436
ORF3a171S171LtCatTa99B.1.36.290.004656
ORF3a171S171LtCatTa99C.140.038961
ORF3a171S171LtCatTa99P.20.00168
ORF3a171S171XtCatAa78All0.000001
ORF3a171S171XtCatGa18All0
ORF3a171S171StcAtcG88AY.470.000249
ORF3a171S171LtCatTa88AY.610.000838
ORF3a171S171LtCatTa88AY.920.002298
ORF3a171S171PTcaCca88B.1.1.70.000007
ORF3a171S171LtCatTa88B.1.4560.026144
ORF3a171S171LtCatTa88B.1.5750.002427
ORF3a171S171LtCatTa88C.230.046512
ORF3a171S171LtCatTa88C.36.30.004538
ORF3a171S171StcAtcG57AY.1030.000031
ORF3a171S171StcAtcT27AY.1030.000012
ORF3a171S171StcAtcT67AY.1190.000212
ORF3a171S171StcAtcG17AY.1190.000035
ORF3a171S171LtCatTa77AY.1200.00026
ORF3a171S171TTcaAca77AY.40.000011
ORF3a171S171LtCatTa77B.1.1.1890.01059
ORF3a171S171TTcaAca77B.1.1.2140.000388
ORF3a171S171LtCatTa77B.1.36.100.033493
ORF3a171S171LtCatTa77B.1.3660.034146
ORF3a171S171LtCatTa77B.1.466.20.002739
ORF3a171S171LtCatTa77B.1.5610.002779
ORF3a171S171del2tCAt--36All0.000001
ORF3a171S171del2TCa--a36All0.000001
ORF3a171S171LtCatTa66AY.1100.000676
ORF3a171S171StcAtcG46AY.3.10.000341
ORF3a171S171StcAtcT26AY.3.10.000171
ORF3a171S171ATcaGca66AY.430.000027
ORF3a171S171StcAtcC36AY.440.000018
ORF3a171S171StcAtcG26AY.440.000012
ORF3a171S171StcAtcT16AY.440.000006
ORF3a171S171LtCatTa66AY.5.30.002024
ORF3a171S171LtCatTa66AY.750.000336
ORF3a171S171LtCatTa66AY.850.002563
ORF3a171S171ATcaGca66B.10.000055
ORF3a171S171LtCatTa66B.1.1.4090.016997
ORF3a171S171LtCatTa66B.1.1.830.01626
ORF3a171S171LtCatTa66B.1.1310.052632
ORF3a171S171LtCatTa66B.1.177.870.004367
ORF3a171S171LtCatTa66B.1.2340.000792
ORF3a171S171LtCatTa66B.1.2400.001293
ORF3a171S171LtCatTa66B.1.258.140.005882
ORF3a171S171LtCatTa66B.1.3490.004289
ORF3a171S171LtCatTa66B.1.617.10.000774
ORF3a171S171LtCatTa66B.1.9.50.034091
ORF3a171S171LtCatTa66P.1.150.001394
ORF3a171S171LtCatTa55A.2.50.002495
ORF3a171S171LtCatTa55AY.190.005701
ORF3a171S171LtCatTa55AY.46.40.000823
ORF3a171S171LtCatTa55AY.840.002187
ORF3a171S171LtCatTa55B.1.1.3970.011261
ORF3a171S171LtCatTa55B.1.1280.003177
ORF3a171S171LtCatTa55B.1.160.230.024155
ORF3a171S171LtCatTa55B.1.177.80.003762
ORF3a171S171LtCatTa55B.1.2320.002687
ORF3a171S171LtCatTa55B.1.3240.008026
ORF3a171S171LtCatTa55B.1.36.170.00247
ORF3a171S171LtCatTa55B.300.073529
ORF3a171S171LtCatTa55C.400.138889
ORF3a171S171LtCatTa340.166667
ORF3a171S171LtCAtTG140.055556
ORF3a171S171LtCatTa44A.20.002647
ORF3a171S171LtCatTa44AY.1160.001147
ORF3a171S171StcAtcG44AY.1200.000149
ORF3a171S171ATcaGca44AY.260.000113
ORF3a171S171StcAtcG44AY.260.000113
ORF3a171S171TTcaAca44AY.30.00004
ORF3a171S171PTcaCca44AY.330.000267
ORF3a171S171LtCatTa44AY.350.000932
ORF3a171S171LtCatTa44AY.360.000593
ORF3a171S171LtCatTa44AY.420.000161
ORF3a171S171LtCatTa44AY.780.006163
ORF3a171S171delTCA---44B.10.000037
ORF3a171S171LtCatTa44B.1.1.1290.036697
ORF3a171S171LtCatTa44B.1.1.2770.003035
ORF3a171S171LtCatTa44B.1.1.3110.001433
ORF3a171S171LtCatTa44B.1.1.3540.017544
ORF3a171S171LtCatTa44B.1.1.3880.181818
ORF3a171S171LtCatTa44B.1.1.4130.027586
ORF3a171S171LtCatTa44B.1.177.810.000757
ORF3a171S171LtCatTa44B.1.177.820.001909
ORF3a171S171LtCatTa44B.1.2060.003263
ORF3a171S171LtCatTa44B.1.3110.001098
ORF3a171S171LtCatTa44B.1.36.80.004
ORF3a171S171LtCatTa44B.1.3620.006163
ORF3a171S171StcAtcT34B.1.5260.000071
ORF3a171S171StcAtcC14B.1.5260.000024
ORF3a171S171LtCatTa44B.1.5600.018519
ORF3a171S171LtCatTa44B.1.5970.018519
ORF3a171S171LtCatTa44B.1.60.068966
ORF3a171S171LtCatTa44B.1.6120.01061
ORF3a171S171delTCA---44B.1.617.20.000015
ORF3a171S171StcAtcG44B.1.6280.001409
ORF3a171S171LtCatTa44B.400.001457
ORF3a171S171LtCatTa44C.300.006908
ORF3a171S171LtCatTa44D.20.0003
ORF3a171S171LtCatTa33A.10.000846
ORF3a171S171PTcaCca33AY.1030.000019
ORF3a171S171LtCatTa33AY.1210.000406
ORF3a171S171PTcaCca33AY.250.000018
ORF3a171S171LtCatTa33AY.300.001187
ORF3a171S171LtCatTa33AY.320.001597
ORF3a171S171LtCatTa33AY.4.50.000322
ORF3a171S171delTCA---33AY.430.000013
ORF3a171S171LtCatTa33AY.560.004815
ORF3a171S171LtCatTa33AY.590.001589
ORF3a171S171LtCatTa33AY.620.001307
ORF3a171S171LtCatTa33AY.680.000821
ORF3a171S171StcAtcT33AY.740.000347
ORF3a171S171LtCatTa33AY.820.004071
ORF3a171S171LtCatTa33AY.870.002498
ORF3a171S171LtCatTa33AY.9.10.000251
ORF3a171S171LtCatTa33AY.910.002191
ORF3a171S171LtCatTa33AY.930.000819
ORF3a171S171LtCatTa33B.1.1.2630.004673
ORF3a171S171LtCatTa33B.1.1.2840.000322
ORF3a171S171LtCatTa33B.1.1.3690.001339
ORF3a171S171LtCatTa33B.1.1.3720.002066
ORF3a171S171LtCatTa33B.1.1.3750.035714
ORF3a171S171LtCatTa33B.1.1.4320.003797
ORF3a171S171LtCatTa33B.1.1.4660.026087
ORF3a171S171LtCatTa33B.1.1.5070.026087
ORF3a171S171LtCatTa33B.1.1.540.009063
ORF3a171S171LtCatTa33B.1.110.30.002155
ORF3a171S171delTCA---33B.1.1770.00004
ORF3a171S171LtCatTa33B.1.177.70.000495
ORF3a171S171del1tcAtc-33B.1.177.820.001432
ORF3a171S171StcAtcG23B.1.20.000018
ORF3a171S171StcAtcC13B.1.20.000009
ORF3a171S171LtCatTa33B.1.2980.006342
ORF3a171S171del2tCAt--33B.1.3510.000089
ORF3a171S171LtCatTa33B.1.36.220.003623
ORF3a171S171LtCatTa33B.1.3690.000856
ORF3a171S171StcAtcG33B.1.3750.002459
ORF3a171S171LtCatTa33B.1.4110.011111
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ORF3a171S171LtCatTa22AY.10.000791
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ORF3a171S171LtCatTa22AY.110.002677
ORF3a171S171LtCatTa22AY.1140.000462
ORF3a171S171LtCatTa22AY.116.10.000623
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ORF3a171S171LtCatTa22AY.550.001835
ORF3a171S171LtCatTa22AY.640.00119
ORF3a171S171LtCatTa22AY.7.10.000225
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ORF3a171S171StcAtcC22AY.750.000112
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ORF3a171S171LtCatTa22AY.860.00166
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ORF3a171S171LtCatTa22B.1.1.1700.002494
ORF3a171S171LtCatTa22B.1.1.1920.004619
ORF3a171S171LtCatTa22B.1.1.2000.014925
ORF3a171S171LtCatTa22B.1.1.2320.00363
ORF3a171S171LtCatTa22B.1.1.2940.002532
ORF3a171S171LtCatTa22B.1.1.30.017391
ORF3a171S171LtCatTa22B.1.1.3160.00185
ORF3a171S171LtCatTa22B.1.1.3180.000604
ORF3a171S171LtCatTa22B.1.1.370.000386
ORF3a171S171LtCatTa22B.1.1.3800.019608
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ORF3a171S171LtCatTa22B.1.1.4480.004065
ORF3a171S171LtCatTa22B.1.1.4590.030769
ORF3a171S171LtCatTa22B.1.1.4640.002946
ORF3a171S171LtCatTa22B.1.1.5210.010695
ORF3a171S171LtCatTa22B.1.1.530.027397
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ORF3a171S171LtCatTa22B.1.177.400.010309
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ORF3a171S171LtCatTa22B.1.2600.006689
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ORF3a171S171LtCatTa11AM.40.003571
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