CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 169

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a169I169IsynatTatC7396780.91745625897-25899
ORF3a169I169IsynatTatA739610.08254425897-25899
ORF3a169I169VnonsynAttGtt6076060.99835325897-25899
ORF3a169I169VnonsynAtTGtG60710.0016474525897-25899
ORF3a169I169FnonsynAttTtt86850.98837225897-25899
ORF3a169I169FnonsynAtTTtC8610.011627925897-25899
ORF3a169I169deldelATT---5858125897-25899
ORF3a169I169LnonsynAttCtt1919125897-25899
ORF3a169I169TnonsynaTtaCt1212125897-25899
ORF3a169I169NnonsynaTtaAt66125897-25899
ORF3a169I169SnonsynaTtaGt430.7525897-25899
ORF3a169I169SnonsynaTTaGC410.2525897-25899
ORF3a169I169MnonsynatTatG22125897-25899
ORF3a169I169del1delATt-At210.525897-25899
ORF3a169I169del1delAtT-tA210.525897-25899
ORF3a169I169del2delATT--N11125897-25899

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a169I169IatTatC678739All0.00013
ORF3a169I169IatTatA61739All0.000012
ORF3a169I169VAttGtt606607All0.000116
ORF3a169I169VAtTGtG1607All0
ORF3a169I169VAttGtt186186AY.1030.001155
ORF3a169I169VAttGtt176176AY.130.028332
ORF3a169I169IatTatC159159B.1.2430.011064
ORF3a169I169IatTatC144144AY.440.000876
ORF3a169I169IatTatC100108B.1.1.70.00009
ORF3a169I169IatTatA8108B.1.1.70.000007
ORF3a169I169FAttTtt8586All0.000016
ORF3a169I169FAtTTtC186All0
ORF3a169I169VAttGtt6161B.1.617.20.00023
ORF3a169I169delATT---5858All0.000011
ORF3a169I169VAttGtt3737B.1.1.70.000033
ORF3a169I169VAttGtt3131B.1.20.000273
ORF3a169I169IatTatC2929AY.310.537037
ORF3a169I169IatTatC2129AY.40.000033
ORF3a169I169IatTatA829AY.40.000012
ORF3a169I169IatTatC2626B.10.000238
ORF3a169I169FAttTtt2323B.1.1.2970.051454
ORF3a169I169IatTatC1522B.1.20.000132
ORF3a169I169IatTatA722B.1.20.000062
ORF3a169I169IatTatC1121AY.1030.000068
ORF3a169I169IatTatA1021AY.1030.000062
ORF3a169I169LAttCtt1919All0.000004
ORF3a169I169IatTatC1818B.1.617.20.000068
ORF3a169I169IatTatC1616B.1.5260.000376
ORF3a169I169IatTatC1515AY.46.60.001083
ORF3a169I169IatTatA914AY.250.000054
ORF3a169I169IatTatC514AY.250.00003
ORF3a169I169delATT---1313B.1.1.70.000012
ORF3a169I169TaTtaCt1212All0.000002
ORF3a169I169IatTatC1212B.1.2580.000799
ORF3a169I169IatTatC1111AY.290.000174
ORF3a169I169VAttGtt1111AY.40.000017
ORF3a169I169VAttGtt99AY.30.00009
ORF3a169I169VAttGtt99AY.430.00004
ORF3a169I169FAttTtt99B.10.000082
ORF3a169I169VAttGtt88AY.250.000048
ORF3a169I169IatTatA88AY.98.10.000387
ORF3a169I169VAttGtt88B.1.160.140.016949
ORF3a169I169IatTatC88B.1.1770.000105
ORF3a169I169FAttTtt77B.1.617.20.000026
ORF3a169I169NaTtaAt66All0.000001
ORF3a169I169IatTatC66AY.30.00006
ORF3a169I169IatTatC66P.70.026201
ORF3a169I169VAttGtt55B.10.000046
ORF3a169I169delATT---55B.10.000046
ORF3a169I169VAttGtt55B.1.10.000091
ORF3a169I169IatTatC55B.1.1.2940.006329
ORF3a169I169IatTatA44A0.001548
ORF3a169I169SaTtaGt34All0.000001
ORF3a169I169SaTTaGC14All0
ORF3a169I169VAttGtt44AY.270.000259
ORF3a169I169delATT---44AY.430.000018
ORF3a169I169IatTatC34AY.430.000013
ORF3a169I169FAttTtt34AY.430.000013
ORF3a169I169FAtTTtC14AY.430.000004
ORF3a169I169IatTatA14AY.430.000004
ORF3a169I169FAttTtt44AY.440.000024
ORF3a169I169LAttCtt44B.1.1.70.000004
ORF3a169I169NaTtaAt44B.1.1.70.000004
ORF3a169I169IatTatC44B.1.2210.000284
ORF3a169I169VAttGtt44B.1.4290.000094
ORF3a169I169delATT---44B.1.617.20.000015
ORF3a169I169LAttCtt33AY.250.000018
ORF3a169I169VAttGtt33AY.290.000047
ORF3a169I169IatTatC33AY.390.000074
ORF3a169I169FAttTtt33AY.40.000005
ORF3a169I169VAttGtt33AY.440.000018
ORF3a169I169LAttCtt33B.10.000027
ORF3a169I169TaTtaCt33B.10.000027
ORF3a169I169IatTatC33B.1.1.1980.004405
ORF3a169I169FAttTtt33B.1.1.3170.001235
ORF3a169I169VAttGtt33B.1.1.390.001529
ORF3a169I169IatTatC33B.1.1.5190.000119
ORF3a169I169FAttTtt33B.1.1.70.000003
ORF3a169I169FAttTtt33B.1.20.000026
ORF3a169I169IatTatC23B.1.4290.000047
ORF3a169I169IatTatA13B.1.4290.000024
ORF3a169I169TaTtaCt33B.1.617.20.000011
ORF3a169I169IatTatC33P.10.000047
ORF3a169I169IatTatC33P.1.100.000808
ORF3a169I169IatTatC33P.20.00056
ORF3a169I169delATT---220.111111
ORF3a169I169MatTatG22All0
ORF3a169I169del1ATt-At12All0
ORF3a169I169del1AtT-tA12All0
ORF3a169I169FAttTtt22AY.1020.000053
ORF3a169I169IatTatC22AY.1020.000053
ORF3a169I169FAttTtt22AY.1030.000012
ORF3a169I169IatTatC22AY.1200.000074
ORF3a169I169IatTatC22AY.200.000078
ORF3a169I169FAttTtt22AY.210.003795
ORF3a169I169VAttGtt22AY.230.000139
ORF3a169I169IatTatC22AY.3.10.000171
ORF3a169I169IatTatC22AY.320.001065
ORF3a169I169VAttGtt22AY.390.000049
ORF3a169I169SaTTaGC12AY.390.000025
ORF3a169I169SaTtaGt12AY.390.000025
ORF3a169I169LAttCtt22AY.40.000003
ORF3a169I169TaTtaCt22AY.40.000003
ORF3a169I169IatTatC22AY.540.000191
ORF3a169I169VAttGtt22AY.680.000547
ORF3a169I169IatTatC22AY.9.20.000073
ORF3a169I169IatTatA12B.1.10.000018
ORF3a169I169IatTatC12B.1.10.000018
ORF3a169I169IatTatC22B.1.1.280.000622
ORF3a169I169IatTatC22B.1.1600.000062
ORF3a169I169delATT---22B.1.1770.000026
ORF3a169I169VAttGtt22B.1.177.210.000153
ORF3a169I169FAttTtt22B.1.258.140.001961
ORF3a169I169IatTatC22B.1.4350.022727
ORF3a169I169FAttTtt22B.1.466.20.000782
ORF3a169I169LAttCtt22B.1.6280.000705
ORF3a169I169IatTatC22D.20.00015
ORF3a169I169FAttTtt22P.10.000032
ORF3a169I169delATT---22P.10.000032
ORF3a169I169delATT---22P.1.150.000465
ORF3a169I169IatTatC22P.1.70.000639
ORF3a169I169TaTtaCt11A0.000387
ORF3a169I169del2ATT--N11All0
ORF3a169I169VAttGtt11AY.1000.000046
ORF3a169I169FAttTtt11AY.1000.000046
ORF3a169I169VAttGtt11AY.1020.000027
ORF3a169I169IatTatC11AY.1160.000287
ORF3a169I169VAttGtt11AY.1180.000063
ORF3a169I169delATT---11AY.1180.000063
ORF3a169I169NaTtaAt11AY.1190.000035
ORF3a169I169delATT---11AY.1200.000037
ORF3a169I169VAttGtt11AY.120.10.000321
ORF3a169I169VAttGtt11AY.150.002222
ORF3a169I169VAttGtt11AY.160.00038
ORF3a169I169FAttTtt11AY.16.10.00047
ORF3a169I169VAtTGtG11AY.200.000039
ORF3a169I169IatTatC11AY.230.00007
ORF3a169I169delATT---11AY.250.000006
ORF3a169I169FAttTtt11AY.30.00001
ORF3a169I169VAttGtt11AY.340.000097
ORF3a169I169LAttCtt11AY.350.000233
ORF3a169I169delATT---11AY.40.000002
ORF3a169I169VAttGtt11AY.4.20.000022
ORF3a169I169delATT---11AY.4.50.000107
ORF3a169I169VAttGtt11AY.420.00004
ORF3a169I169del1AtT-tA11AY.430.000004
ORF3a169I169SaTtaGt11AY.430.000004
ORF3a169I169VAttGtt11AY.450.000122
ORF3a169I169VAttGtt11AY.460.000104
ORF3a169I169VAttGtt11AY.50.000021
ORF3a169I169VAttGtt11AY.530.000288
ORF3a169I169VAttGtt11AY.540.000095
ORF3a169I169IatTatA11AY.610.000105
ORF3a169I169VAttGtt11AY.620.000436
ORF3a169I169delATT---11AY.680.000274
ORF3a169I169delATT---11AY.7.20.000559
ORF3a169I169VAttGtt11AY.750.000056
ORF3a169I169VAttGtt11AY.880.000884
ORF3a169I169IatTatC11AY.9.10.000084
ORF3a169I169TaTtaCt11AY.9.20.000037
ORF3a169I169VAttGtt11AY.9.20.000037
ORF3a169I169FAttTtt11AY.9.20.000037
ORF3a169I169SaTtaGt11AY.980.000079
ORF3a169I169IatTatC11AY.980.000079
ORF3a169I169delATT---11AY.98.10.000048
ORF3a169I169LAttCtt11AY.98.10.000048
ORF3a169I169VAttGtt11AY.98.10.000048
ORF3a169I169FAttTtt11B0.000128
ORF3a169I169FAttTtt11B.1.10.000018
ORF3a169I169FAttTtt11B.1.1.1760.000439
ORF3a169I169delATT---11B.1.1.2140.000055
ORF3a169I169MatTatG11B.1.1.250.000569
ORF3a169I169IatTatC11B.1.1.3060.000438
ORF3a169I169del1ATt-At11B.1.1.3060.000438
ORF3a169I169IatTatC11B.1.1.3110.000358
ORF3a169I169del2ATT--N11B.1.1.3150.008475
ORF3a169I169VAttGtt11B.1.1.3180.000302
ORF3a169I169delATT---11B.1.1.4090.002833
ORF3a169I169IatTatC11B.1.1.4170.002703
ORF3a169I169IatTatC11B.1.1.4200.001006
ORF3a169I169IatTatA11B.1.1.4450.037037
ORF3a169I169FAttTtt11B.1.1.5190.00004
ORF3a169I169VAttGtt11B.1.1.5190.00004
ORF3a169I169TaTtaCt11B.1.1.70.000001
ORF3a169I169FAttTtt11B.1.1.700.000341
ORF3a169I169delATT---11B.1.1600.000031
ORF3a169I169delATT---11B.1.160.230.004831
ORF3a169I169FAttTtt11B.1.1770.000013
ORF3a169I169TaTtaCt11B.1.1770.000013
ORF3a169I169VAttGtt11B.1.1770.000013
ORF3a169I169delATT---11B.1.177.510.004566
ORF3a169I169IatTatA11B.1.177.570.000281
ORF3a169I169delATT---11B.1.177.620.001192
ORF3a169I169VAttGtt11B.1.177.810.000189
ORF3a169I169NaTtaAt11B.1.20.000009
ORF3a169I169LAttCtt11B.1.20.000009
ORF3a169I169delATT---11B.1.2210.000071
ORF3a169I169IatTatC11B.1.2320.000537
ORF3a169I169IatTatC11B.1.243.10.022222
ORF3a169I169IatTatC11B.1.2470.014925
ORF3a169I169FAttTtt11B.1.258.110.000396
ORF3a169I169VAttGtt11B.1.258.140.00098
ORF3a169I169delATT---11B.1.258.160.001637
ORF3a169I169IatTatC11B.1.3510.00003
ORF3a169I169VAttGtt11B.1.3510.00003
ORF3a169I169IatTatC11B.1.360.000146
ORF3a169I169delATT---11B.1.416.10.001563
ORF3a169I169FAttTtt11B.1.4220.000812
ORF3a169I169VAttGtt11B.1.4270.00005
ORF3a169I169delATT---11B.1.4270.00005
ORF3a169I169LAttCtt11B.1.4290.000024
ORF3a169I169FAttTtt11B.1.4290.000024
ORF3a169I169IatTatC11B.1.466.20.000391
ORF3a169I169IatTatC11B.1.4710.002732
ORF3a169I169IatTatC11B.1.4990.00105
ORF3a169I169VAttGtt11B.1.4990.00105
ORF3a169I169VAttGtt11B.1.5090.000866
ORF3a169I169delATT---11B.1.5250.000113
ORF3a169I169IatTatC11B.1.5250.000113
ORF3a169I169VAttGtt11B.1.5260.000024
ORF3a169I169IatTatA11B.1.5270.003704
ORF3a169I169FAttTtt11B.1.5300.007143
ORF3a169I169VAttGtt11B.1.5950.000261
ORF3a169I169delATT---11B.1.5960.000087
ORF3a169I169delATT---11B.1.617.10.000129
ORF3a169I169LAttCtt11B.1.617.20.000004
ORF3a169I169delATT---11B.1.6210.000089
ORF3a169I169MatTatG11B.1.6280.000352
ORF3a169I169VAttGtt11B.1.6280.000352
ORF3a169I169VAttGtt11B.1.6370.000073
ORF3a169I169delATT---11B.1.6380.052632
ORF3a169I169IatTatC11B.1.90.006173
ORF3a169I169VAttGtt11D.20.000075
ORF3a169I169VAttGtt11P.10.000016
ORF3a169I169VAttGtt11Q.10.000126
ORF3a169I169delATT---11Q.10.000126
ORF3a169I169IatTatC11Q.10.000126
ORF3a169I169FAttTtt11Q.30.000145