CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 163 | V163I | nonsyn | GtA | AtT | 1915 | 1732 | 0.904439 | 25879-25881 | |
ORF3a | 163 | V163I | nonsyn | Gta | Ata | 1915 | 183 | 0.0955614 | 25879-25881 | |
ORF3a | 163 | V163L | nonsyn | Gta | Tta | 1541 | 1469 | 0.953277 | 25879-25881 | |
ORF3a | 163 | V163L | nonsyn | Gta | Cta | 1541 | 72 | 0.0467229 | 25879-25881 | |
ORF3a | 163 | V163V | syn | gtA | gtT | 287 | 162 | 0.56446 | 25879-25881 | |
ORF3a | 163 | V163V | syn | gtA | gtG | 287 | 120 | 0.418118 | 25879-25881 | |
ORF3a | 163 | V163V | syn | gtA | gtC | 287 | 5 | 0.0174216 | 25879-25881 | |
ORF3a | 163 | V163A | nonsyn | gTa | gCa | 248 | 248 | 1 | 25879-25881 | |
ORF3a | 163 | V163del | del | GTA | --- | 67 | 67 | 1 | 25879-25881 | |
ORF3a | 163 | V163G | nonsyn | gTa | gGa | 6 | 6 | 1 | 25879-25881 | |
ORF3a | 163 | V163T | nonsyn | GTa | ACa | 2 | 2 | 1 | 25879-25881 | |
ORF3a | 163 | V163del2 | del | GTa | --a | 2 | 1 | 0.5 | 25879-25881 | |
ORF3a | 163 | V163del2 | del | gTA | g-- | 2 | 1 | 0.5 | 25879-25881 | |
ORF3a | 163 | V163D | nonsyn | gTA | gAT | 1 | 1 | 1 | 25879-25881 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 163 | V163I | GtA | AtT | 1732 | 1915 | All | 0.000331 |
ORF3a | 163 | V163I | Gta | Ata | 183 | 1915 | All | 0.000035 |
ORF3a | 163 | V163I | GtA | AtT | 1629 | 1635 | B.1.177.54 | 0.987871 |
ORF3a | 163 | V163I | Gta | Ata | 6 | 1635 | B.1.177.54 | 0.003639 |
ORF3a | 163 | V163L | Gta | Tta | 1469 | 1541 | All | 0.000281 |
ORF3a | 163 | V163L | Gta | Cta | 72 | 1541 | All | 0.000014 |
ORF3a | 163 | V163L | Gta | Tta | 292 | 292 | AY.27 | 0.018898 |
ORF3a | 163 | V163V | gtA | gtT | 162 | 287 | All | 0.000031 |
ORF3a | 163 | V163V | gtA | gtG | 120 | 287 | All | 0.000023 |
ORF3a | 163 | V163V | gtA | gtC | 5 | 287 | All | 0.000001 |
ORF3a | 163 | V163A | gTa | gCa | 248 | 248 | All | 0.000047 |
ORF3a | 163 | V163L | Gta | Tta | 166 | 201 | B.1.1.7 | 0.000149 |
ORF3a | 163 | V163L | Gta | Cta | 35 | 201 | B.1.1.7 | 0.000031 |
ORF3a | 163 | V163L | Gta | Tta | 80 | 81 | AY.4 | 0.000125 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 81 | AY.4 | 0.000002 |
ORF3a | 163 | V163L | Gta | Tta | 68 | 80 | AY.43 | 0.000301 |
ORF3a | 163 | V163L | Gta | Cta | 12 | 80 | AY.43 | 0.000053 |
ORF3a | 163 | V163L | Gta | Tta | 70 | 74 | B.1.617.2 | 0.000264 |
ORF3a | 163 | V163L | Gta | Cta | 4 | 74 | B.1.617.2 | 0.000015 |
ORF3a | 163 | V163L | Gta | Tta | 72 | 72 | B.1.1.39 | 0.036697 |
ORF3a | 163 | V163L | Gta | Tta | 69 | 69 | B.1 | 0.000632 |
ORF3a | 163 | V163I | Gta | Ata | 69 | 69 | B.1.1.7 | 0.000062 |
ORF3a | 163 | V163del | GTA | --- | 67 | 67 | All | 0.000013 |
ORF3a | 163 | V163A | gTa | gCa | 67 | 67 | B.1.1.7 | 0.00006 |
ORF3a | 163 | V163A | gTa | gCa | 55 | 55 | B.1.2 | 0.000484 |
ORF3a | 163 | V163L | Gta | Tta | 50 | 50 | AY.37 | 0.015803 |
ORF3a | 163 | V163L | Gta | Tta | 44 | 44 | B.1.568 | 0.048889 |
ORF3a | 163 | V163I | GtA | AtT | 43 | 43 | V.1 | 0.977273 |
ORF3a | 163 | V163V | gtA | gtT | 28 | 41 | AY.25 | 0.000168 |
ORF3a | 163 | V163V | gtA | gtG | 13 | 41 | AY.25 | 0.000078 |
ORF3a | 163 | V163V | gtA | gtT | 40 | 40 | B.1.258.3 | 0.067002 |
ORF3a | 163 | V163L | Gta | Tta | 35 | 35 | B.1.1.519 | 0.00139 |
ORF3a | 163 | V163I | GtA | AtT | 31 | 31 | V.2 | 1 |
ORF3a | 163 | V163L | Gta | Tta | 30 | 30 | AY.44 | 0.000183 |
ORF3a | 163 | V163V | gtA | gtT | 28 | 28 | AY.103 | 0.000174 |
ORF3a | 163 | V163I | Gta | Ata | 26 | 26 | B.1.1.284 | 0.002792 |
ORF3a | 163 | V163L | Gta | Tta | 26 | 26 | P.1.14 | 0.001243 |
ORF3a | 163 | V163I | GtA | AtT | 13 | 25 | B.1 | 0.000119 |
ORF3a | 163 | V163I | Gta | Ata | 12 | 25 | B.1 | 0.00011 |
ORF3a | 163 | V163L | Gta | Tta | 17 | 24 | AY.102 | 0.000451 |
ORF3a | 163 | V163L | Gta | Cta | 7 | 24 | AY.102 | 0.000186 |
ORF3a | 163 | V163A | gTa | gCa | 23 | 23 | AY.25 | 0.000138 |
ORF3a | 163 | V163V | gtA | gtG | 11 | 21 | B.1.177 | 0.000145 |
ORF3a | 163 | V163V | gtA | gtT | 6 | 21 | B.1.177 | 0.000079 |
ORF3a | 163 | V163V | gtA | gtC | 4 | 21 | B.1.177 | 0.000053 |
ORF3a | 163 | V163L | Gta | Tta | 16 | 20 | B.1.2 | 0.000141 |
ORF3a | 163 | V163L | Gta | Cta | 4 | 20 | B.1.2 | 0.000035 |
ORF3a | 163 | V163del | GTA | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF3a | 163 | V163L | Gta | Tta | 18 | 18 | AY.9.2 | 0.000661 |
ORF3a | 163 | V163L | Gta | Tta | 18 | 18 | B.1.1 | 0.000327 |
ORF3a | 163 | V163L | Gta | Tta | 17 | 17 | AY.26 | 0.000481 |
ORF3a | 163 | V163L | Gta | Tta | 17 | 17 | B.1.146 | 0.072034 |
ORF3a | 163 | V163L | Gta | Tta | 17 | 17 | B.1.177 | 0.000224 |
ORF3a | 163 | V163I | GtA | AtT | 10 | 17 | B.1.177 | 0.000132 |
ORF3a | 163 | V163I | Gta | Ata | 7 | 17 | B.1.177 | 0.000092 |
ORF3a | 163 | V163L | Gta | Tta | 16 | 16 | AY.33 | 0.001068 |
ORF3a | 163 | V163L | Gta | Tta | 15 | 15 | AY.103 | 0.000093 |
ORF3a | 163 | V163V | gtA | gtG | 12 | 15 | B.1.1.7 | 0.000011 |
ORF3a | 163 | V163V | gtA | gtT | 3 | 15 | B.1.1.7 | 0.000003 |
ORF3a | 163 | V163L | Gta | Tta | 13 | 14 | AY.39 | 0.000321 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 14 | AY.39 | 0.000025 |
ORF3a | 163 | V163L | Gta | Tta | 14 | 14 | AY.47 | 0.000435 |
ORF3a | 163 | V163V | gtA | gtT | 13 | 14 | B.1 | 0.000119 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 14 | B.1 | 0.000009 |
ORF3a | 163 | V163A | gTa | gCa | 13 | 13 | AY.113 | 0.001851 |
ORF3a | 163 | V163V | gtA | gtG | 13 | 13 | AY.99.2 | 0.001198 |
ORF3a | 163 | V163V | gtA | gtT | 7 | 13 | B.1.617.2 | 0.000026 |
ORF3a | 163 | V163V | gtA | gtG | 6 | 13 | B.1.617.2 | 0.000023 |
ORF3a | 163 | V163L | Gta | Tta | 13 | 13 | P.1.15 | 0.00302 |
ORF3a | 163 | V163A | gTa | gCa | 12 | 12 | B.1.177.75 | 0.012487 |
ORF3a | 163 | V163L | Gta | Tta | 12 | 12 | B.1.351 | 0.000357 |
ORF3a | 163 | V163V | gtA | gtG | 12 | 12 | B.1.517 | 0.005124 |
ORF3a | 163 | V163L | Gta | Tta | 12 | 12 | P.1 | 0.000189 |
ORF3a | 163 | V163L | Gta | Tta | 11 | 11 | B.1.1.204 | 0.033435 |
ORF3a | 163 | V163L | Gta | Tta | 8 | 10 | AY.25 | 0.000048 |
ORF3a | 163 | V163L | Gta | Cta | 2 | 10 | AY.25 | 0.000012 |
ORF3a | 163 | V163A | gTa | gCa | 10 | 10 | AY.4 | 0.000016 |
ORF3a | 163 | V163L | Gta | Tta | 10 | 10 | B.1.621.1 | 0.005058 |
ORF3a | 163 | V163L | Gta | Tta | 9 | 9 | A.19 | 0.084906 |
ORF3a | 163 | V163L | Gta | Tta | 9 | 9 | AY.39.1.1 | 0.006522 |
ORF3a | 163 | V163L | Gta | Tta | 9 | 9 | B.1.362 | 0.013867 |
ORF3a | 163 | V163L | Gta | Tta | 8 | 8 | AY.121 | 0.001083 |
ORF3a | 163 | V163L | Gta | Tta | 8 | 8 | AY.3 | 0.00008 |
ORF3a | 163 | V163L | Gta | Tta | 8 | 8 | AY.99.2 | 0.000737 |
ORF3a | 163 | V163A | gTa | gCa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 163 | V163I | Gta | Ata | 7 | 7 | AY.4 | 0.000011 |
ORF3a | 163 | V163V | gtA | gtG | 6 | 7 | AY.43 | 0.000027 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 7 | AY.43 | 0.000004 |
ORF3a | 163 | V163V | gtA | gtG | 4 | 7 | AY.44 | 0.000024 |
ORF3a | 163 | V163V | gtA | gtT | 3 | 7 | AY.44 | 0.000018 |
ORF3a | 163 | V163L | Gta | Tta | 7 | 7 | AY.46.6 | 0.000505 |
ORF3a | 163 | V163V | gtA | gtG | 7 | 7 | B.1.243 | 0.000487 |
ORF3a | 163 | V163L | Gta | Tta | 7 | 7 | B.1.617.1 | 0.000903 |
ORF3a | 163 | V163I | Gta | Ata | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 163 | V163I | Gta | Ata | 7 | 7 | P.1 | 0.00011 |
ORF3a | 163 | V163A | gTa | gCa | 7 | 7 | Q.2 | 0.004294 |
ORF3a | 163 | V163G | gTa | gGa | 6 | 6 | All | 0.000001 |
ORF3a | 163 | V163I | Gta | Ata | 6 | 6 | AY.102 | 0.000159 |
ORF3a | 163 | V163L | Gta | Tta | 6 | 6 | AY.116.1 | 0.001869 |
ORF3a | 163 | V163A | gTa | gCa | 6 | 6 | AY.119 | 0.000212 |
ORF3a | 163 | V163L | Gta | Tta | 6 | 6 | AY.20 | 0.000233 |
ORF3a | 163 | V163A | gTa | gCa | 6 | 6 | B.1.1.519 | 0.000238 |
ORF3a | 163 | V163V | gtA | gtT | 3 | 5 | AY.102 | 0.00008 |
ORF3a | 163 | V163V | gtA | gtG | 2 | 5 | AY.102 | 0.000053 |
ORF3a | 163 | V163L | Gta | Tta | 5 | 5 | AY.120 | 0.000186 |
ORF3a | 163 | V163V | gtA | gtG | 5 | 5 | AY.26 | 0.000142 |
ORF3a | 163 | V163del | GTA | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 163 | V163I | Gta | Ata | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 163 | V163del | GTA | --- | 5 | 5 | B.1 | 0.000046 |
ORF3a | 163 | V163I | GtA | AtT | 3 | 5 | B.1.177.4 | 0.000633 |
ORF3a | 163 | V163I | Gta | Ata | 2 | 5 | B.1.177.4 | 0.000422 |
ORF3a | 163 | V163V | gtA | gtT | 5 | 5 | B.1.177.54 | 0.003032 |
ORF3a | 163 | V163L | Gta | Tta | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 163 | V163V | gtA | gtT | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 163 | V163L | Gta | Tta | 4 | 4 | AY.38 | 0.001997 |
ORF3a | 163 | V163V | gtA | gtT | 3 | 4 | AY.4 | 0.000005 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 4 | AY.4 | 0.000002 |
ORF3a | 163 | V163A | gTa | gCa | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 163 | V163A | gTa | gCa | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 163 | V163V | gtA | gtG | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 163 | V163I | Gta | Ata | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 163 | V163I | Gta | Ata | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 163 | V163G | gTa | gGa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 163 | V163L | Gta | Tta | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 163 | V163V | gtA | gtG | 3 | 4 | B.1.2 | 0.000026 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 4 | B.1.2 | 0.000009 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 4 | B.1.429 | 0.000071 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 4 | B.1.429 | 0.000024 |
ORF3a | 163 | V163L | Gta | Tta | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 163 | V163A | gTa | gCa | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 3 | AY.29 | 0.000032 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 3 | AY.29 | 0.000016 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 163 | V163I | Gta | Ata | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 3 | AY.5 | 0.000041 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 3 | AY.5 | 0.000021 |
ORF3a | 163 | V163V | gtA | gtG | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | AY.84 | 0.001312 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 3 | B.1.36 | 0.000292 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 3 | B.1.36 | 0.000146 |
ORF3a | 163 | V163V | gtA | gtT | 3 | 3 | B.1.389 | 0.003006 |
ORF3a | 163 | V163L | Gta | Tta | 3 | 3 | B.1.406 | 0.018182 |
ORF3a | 163 | V163A | gTa | gCa | 3 | 3 | P.1 | 0.000047 |
ORF3a | 163 | V163A | gTa | gCa | 3 | 3 | P.1.17 | 0.000485 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | 0.111111 | |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 163 | V163T | GTa | ACa | 2 | 2 | All | 0 |
ORF3a | 163 | V163del2 | gTA | g-- | 1 | 2 | All | 0 |
ORF3a | 163 | V163del2 | GTa | --a | 1 | 2 | All | 0 |
ORF3a | 163 | V163I | Gta | Ata | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 163 | V163I | Gta | Ata | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 163 | V163I | Gta | Ata | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 163 | V163I | Gta | Ata | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.41 | 0.000588 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 163 | V163V | gtA | gtG | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.1.368 | 0.006173 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 163 | V163T | GTa | ACa | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 163 | V163V | gtA | gtT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 163 | V163I | GtA | AtT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 163 | V163A | gTa | gCa | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 163 | V163V | gtA | gtG | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 163 | V163V | gtA | gtG | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 2 | C.37 | 0.000116 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 2 | C.37 | 0.000116 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | D.2 | 0.00015 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 163 | V163L | Gta | Tta | 2 | 2 | P.1.10 | 0.000539 |
ORF3a | 163 | V163del | GTA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | A | 0.000387 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | A | 0.000387 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 163 | V163D | gTA | gAT | 1 | 1 | All | 0 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 163 | V163del2 | gTA | g-- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 163 | V163G | gTa | gGa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.66 | 0.00107 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 163 | V163D | gTA | gAT | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B | 0.000128 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | B | 0.000128 |
ORF3a | 163 | V163del2 | GTa | --a | 1 | 1 | B.1 | 0.000009 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.152 | 0.04 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.1.513 | 0.012346 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.112 | 0.005181 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.169 | 0.014925 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.177.88 | 0.012346 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 163 | V163G | gTa | gGa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.425 | 0.002994 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.435 | 0.011364 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 163 | V163V | gtA | gtC | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 163 | V163A | gTa | gCa | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 163 | V163del | GTA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 163 | V163L | Gta | Cta | 1 | 1 | B.47 | 0.020408 |
ORF3a | 163 | V163V | gtA | gtG | 1 | 1 | B.6 | 0.00091 |
ORF3a | 163 | V163I | Gta | Ata | 1 | 1 | C.16 | 0.00106 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | N.5 | 0.001767 |
ORF3a | 163 | V163V | gtA | gtT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 163 | V163L | Gta | Tta | 1 | 1 | P.1.17.1 | 0.000875 |
ORF3a | 163 | V163I | GtA | AtT | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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