CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a160Y160YsyntaCtaT2069120691125870-25872
ORF3a160Y160HnonsynTacCac162162125870-25872
ORF3a160Y160deldelTAC---6767125870-25872
ORF3a160Y160CnonsyntActGc5151125870-25872
ORF3a160Y160XnonsyntaCtaA870.87525870-25872
ORF3a160Y160XnonsyntaCtaG810.12525870-25872
ORF3a160Y160SnonsyntActCc530.625870-25872
ORF3a160Y160SnonsyntACtCA520.425870-25872
ORF3a160Y160FnonsyntActTc44125870-25872
ORF3a160Y160AnonsynTACGCA420.525870-25872
ORF3a160Y160AnonsynTAcGCc420.525870-25872
ORF3a160Y160NnonsynTacAac22125870-25872
ORF3a160Y160DnonsynTacGac22125870-25872
ORF3a160Y160EnonsynTaCGaA22125870-25872
ORF3a160Y160del1deltAct-c11125870-25872

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a160Y160YtaCtaT2069120691All0.003957
ORF3a160Y160YtaCtaT2028220282AY.420.815947
ORF3a160Y160HTacCac162162All0.000031
ORF3a160Y160HTacCac8787AY.4.20.001887
ORF3a160Y160YtaCtaT7979B.1.617.20.000297
ORF3a160Y160delTAC---6767All0.000013
ORF3a160Y160YtaCtaT6262P.10.000977
ORF3a160Y160YtaCtaT6060AY.30.000597
ORF3a160Y160CtActGc5151All0.00001
ORF3a160Y160CtActGc3535AY.430.000155
ORF3a160Y160HTacCac3434B.1.1.70.00003
ORF3a160Y160YtaCtaT2727B.1.2050.642857
ORF3a160Y160YtaCtaT1919AY.40.00003
ORF3a160Y160YtaCtaT1919AY.440.000116
ORF3a160Y160delTAC---1919B.1.1.70.000017
ORF3a160Y160YtaCtaT1616AY.430.000071
ORF3a160Y160HTacCac1313AY.40.00002
ORF3a160Y160YtaCtaT1212AY.250.000072
ORF3a160Y160YtaCtaT1111B.1.1.70.00001
ORF3a160Y160XtaCtaA78All0.000001
ORF3a160Y160XtaCtaG18All0
ORF3a160Y160YtaCtaT88B.10.000073
ORF3a160Y160YtaCtaT66AY.99.20.000553
ORF3a160Y160delTAC---66B.10.000055
ORF3a160Y160YtaCtaT66B.1.5170.002562
ORF3a160Y160StActCc35All0.000001
ORF3a160Y160StACtCA25All0
ORF3a160Y160YtaCtaT55AY.1130.000712
ORF3a160Y160YtaCtaT55AY.200.000194
ORF3a160Y160StActCc240.111111
ORF3a160Y160StACtCA240.111111
ORF3a160Y160ATAcGCc240.111111
ORF3a160Y160ATACGCA240.111111
ORF3a160Y160FtActTc44All0.000001
ORF3a160Y160ATAcGCc24All0
ORF3a160Y160ATACGCA24All0
ORF3a160Y160YtaCtaT44AY.1020.000106
ORF3a160Y160YtaCtaT44AY.260.000113
ORF3a160Y160CtActGc44AY.40.000006
ORF3a160Y160YtaCtaT44AY.9.20.000147
ORF3a160Y160HTacCac44B.10.000037
ORF3a160Y160YtaCtaT33AY.1170.000254
ORF3a160Y160YtaCtaT33AY.390.000074
ORF3a160Y160delTAC---33AY.430.000013
ORF3a160Y160CtActGc33AY.440.000018
ORF3a160Y160YtaCtaT33AY.98.10.000145
ORF3a160Y160YtaCtaT33B.1.1.2220.000612
ORF3a160Y160delTAC---33B.1.1770.00004
ORF3a160Y160ETaCGaA220.111111
ORF3a160Y160XtaCtaA220.111111
ORF3a160Y160delTAC---220.111111
ORF3a160Y160DTacGac220.111111
ORF3a160Y160NTacAac22All0
ORF3a160Y160DTacGac22All0
ORF3a160Y160ETaCGaA22All0
ORF3a160Y160YtaCtaT22AY.230.000139
ORF3a160Y160HTacCac22AY.30.00002
ORF3a160Y160FtActTc22AY.30.00002
ORF3a160Y160HTacCac22AY.390.000049
ORF3a160Y160delTAC---22AY.40.000003
ORF3a160Y160XtaCtaA12AY.40.000002
ORF3a160Y160XtaCtaG12AY.40.000002
ORF3a160Y160YtaCtaT22AY.4.10.001475
ORF3a160Y160HTacCac22AY.430.000009
ORF3a160Y160HTacCac22AY.450.000243
ORF3a160Y160YtaCtaT22AY.460.000208
ORF3a160Y160YtaCtaT22AY.46.60.000144
ORF3a160Y160HTacCac22AY.50.000041
ORF3a160Y160CtActGc22AY.740.000231
ORF3a160Y160YtaCtaT22AY.750.000112
ORF3a160Y160YtaCtaT22AY.920.000575
ORF3a160Y160YtaCtaT22AY.980.000158
ORF3a160Y160CtActGc22AY.98.10.000097
ORF3a160Y160delTAC---22B.1.1.3150.016949
ORF3a160Y160YtaCtaT22B.1.177.810.000379
ORF3a160Y160YtaCtaT22B.1.20.000018
ORF3a160Y160HTacCac22B.1.4270.000101
ORF3a160Y160delTAC---22B.1.617.20.000008
ORF3a160Y160delTAC---22B.1.6210.000177
ORF3a160Y160HTacCac22P.10.000032
ORF3a160Y160delTAC---22P.10.000032
ORF3a160Y160YtaCtaT22P.1.120.000968
ORF3a160Y160delTAC---22P.1.150.000465
ORF3a160Y160YtaCtaT22P.1.70.000639
ORF3a160Y160delTAC---11A0.000387
ORF3a160Y160delTAC---11AD.20.000219
ORF3a160Y160del1tAct-c11All0
ORF3a160Y160YtaCtaT11AY.1000.000046
ORF3a160Y160CtActGc11AY.1020.000027
ORF3a160Y160CtActGc11AY.1030.000006
ORF3a160Y160HTacCac11AY.1030.000006
ORF3a160Y160YtaCtaT11AY.1050.000643
ORF3a160Y160YtaCtaT11AY.1110.000183
ORF3a160Y160YtaCtaT11AY.1160.000287
ORF3a160Y160YtaCtaT11AY.1180.000063
ORF3a160Y160delTAC---11AY.1200.000037
ORF3a160Y160YtaCtaT11AY.160.00038
ORF3a160Y160HTacCac11AY.250.000006
ORF3a160Y160delTAC---11AY.250.000006
ORF3a160Y160HTacCac11AY.290.000016
ORF3a160Y160YtaCtaT11AY.290.000016
ORF3a160Y160delTAC---11AY.290.000016
ORF3a160Y160YtaCtaT11AY.330.000067
ORF3a160Y160YtaCtaT11AY.34.10.00051
ORF3a160Y160YtaCtaT11AY.39.10.00004
ORF3a160Y160HTacCac11AY.4.2.10.000149
ORF3a160Y160NTacAac11AY.4.50.000107
ORF3a160Y160delTAC---11AY.4.50.000107
ORF3a160Y160YtaCtaT11AY.4.50.000107
ORF3a160Y160HTacCac11AY.440.000006
ORF3a160Y160XtaCtaA11AY.450.000122
ORF3a160Y160YtaCtaT11AY.450.000122
ORF3a160Y160YtaCtaT11AY.5.30.000337
ORF3a160Y160YtaCtaT11AY.520.000814
ORF3a160Y160YtaCtaT11AY.530.000288
ORF3a160Y160YtaCtaT11AY.590.00053
ORF3a160Y160HTacCac11AY.60.000041
ORF3a160Y160YtaCtaT11AY.60.000041
ORF3a160Y160delTAC---11AY.680.000274
ORF3a160Y160HTacCac11AY.70.000196
ORF3a160Y160YtaCtaT11AY.900.000684
ORF3a160Y160YtaCtaT11B0.000128
ORF3a160Y160delTAC---11B0.000128
ORF3a160Y160XtaCtaA11B.10.000009
ORF3a160Y160YtaCtaT11B.1.1.1570.000913
ORF3a160Y160delTAC---11B.1.1.2140.000055
ORF3a160Y160StActCc11B.1.1.2530.002506
ORF3a160Y160HTacCac11B.1.1.3060.000438
ORF3a160Y160CtActGc11B.1.1.3170.000412
ORF3a160Y160delTAC---11B.1.1.4090.002833
ORF3a160Y160YtaCtaT11B.1.1.5250.005464
ORF3a160Y160XtaCtaA11B.1.1.70.000001
ORF3a160Y160delTAC---11B.1.1400.018868
ORF3a160Y160delTAC---11B.1.1600.000031
ORF3a160Y160delTAC---11B.1.160.230.004831
ORF3a160Y160CtActGc11B.1.1770.000013
ORF3a160Y160YtaCtaT11B.1.1770.000013
ORF3a160Y160delTAC---11B.1.177.40.000211
ORF3a160Y160delTAC---11B.1.177.510.004566
ORF3a160Y160delTAC---11B.1.177.620.001192
ORF3a160Y160FtActTc11B.1.177.730.000566
ORF3a160Y160YtaCtaT11B.1.177.730.000566
ORF3a160Y160del1tAct-c11B.1.20.000009
ORF3a160Y160delTAC---11B.1.2210.000071
ORF3a160Y160YtaCtaT11B.1.2580.000067
ORF3a160Y160YtaCtaT11B.1.3510.00003
ORF3a160Y160YtaCtaT11B.1.351.50.0006
ORF3a160Y160delTAC---11B.1.416.10.001563
ORF3a160Y160HTacCac11B.1.4290.000024
ORF3a160Y160delTAC---11B.1.5250.000113
ORF3a160Y160XtaCtaA11B.1.5960.000087
ORF3a160Y160delTAC---11B.1.5960.000087
ORF3a160Y160YtaCtaT11B.1.5960.000087
ORF3a160Y160delTAC---11B.1.617.10.000129
ORF3a160Y160FtActTc11B.1.617.20.000004
ORF3a160Y160HTacCac11B.1.617.20.000004
ORF3a160Y160YtaCtaT11B.1.6370.000073
ORF3a160Y160delTAC---11B.1.6380.052632
ORF3a160Y160NTacAac11B.60.00091
ORF3a160Y160CtActGc11C.350.000774